BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G15770.1

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941065 jgi|Araly1|941065|scaffold_601609.1                        675    0.0  


> Ahg941065 jgi|Araly1|941065|scaffold_601609.1
Length=491

 Score =  675 bits (365),  Expect = 0.0
 Identities = 418/444 (94%), Gaps = 2/444 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGAGACATTCAAGATCCGAAAACTGGAGATCTCCGATAAGAGAAAAGGATTCATC  60
            ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct  21   ATGGCGGAGACATTCAAGATCCGAAGACTAGAGATCTCCGATAAGAGAAAAGGATTCATC  80

Query  61   GAGCTTCTAGGTCAACTAACCGTCACCGGATCAGTAACAGACGAAGAATTCGATCGGCGA  120
            ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  81   GAGCTTCTAGGTCAACTCACCGTCACCGGATCAGTAACCGACGAAGAATTCGATCGGCGA  140

Query  121  TTCGAAGAAATCAGATCGTATGGTGACGACCACGTGATCTGCGTGATCGAAGAAGAAACT  180
            |||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct  141  TTCGAAGAAATCAGATCGTACGGAGACGATCACGTGATCTGCGTGATCGAAGATGAAACT  200

Query  181  TCGGGAAAAATCGCTGCTACGGGTAGTGTGATGATAGAGAAGAAGTTTCTGAGGAATTGC  240
            ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| 
Sbjct  201  TCGGGAAAAATCGCTGCTACGGGAAGTGTGATGATAGAGAAGAAGTTTTTGAGGAATTGT  260

Query  241  GGTAAAGCTGGGCACATTGAAGACGTTGTTGTGGATTCAAGGTTTCGCGGGAAACAGCTG  300
            || |||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct  261  GGGAAAGTTGGGCACATTGAAGACGTTGTTGTGGATTCAAGGTTTCGCGGGAAACAATTG  320

Query  301  GGGAAGAAAGTTGTTGAGTTTCTTATGGATCATTGCAAATCAATGGGTTGCTATAAGGTG  360
            ||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  321  GGGAAGAAAGTGGTGGAGTTTCTTATGGACCATAGCAAATCAATGGGTTGCTATAAGGTG  380

Query  361  ATTCTAGATTGTAGTGTGGAGAACAAAGTGTTCTATGAGAAATGTGGGATGAGT-AATAA  419
            ||||| ||||||||||||||||| |||||||| ||||||||||||||||||| | |||||
Sbjct  381  ATTCTTGATTGTAGTGTGGAGAATAAAGTGTTTTATGAGAAATGTGGGATGA-TCAATAA  439

Query  420  ATCGATTCAAATGTCTAAGTACTT  443
            ||||||||| ||||||||||||||
Sbjct  440  ATCGATTCAGATGTCTAAGTACTT  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16254280914


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5