BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15780.1
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488422 jgi|Araly1|488422|fgenesh2_kg.6__1556__AT5G15780.1 1489 0.0
> Ahg488422 jgi|Araly1|488422|fgenesh2_kg.6__1556__AT5G15780.1
Length=1319
Score = 1489 bits (806), Expect = 0.0
Identities = 966/1039 (93%), Gaps = 27/1039 (3%)
Strand=Plus/Plus
Query 2 TCTTTTAACAATCTCTTCGTTTTTCGTGGCTCACTCATCTTCACACCACACTCCTATATA 61
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTTTAACAATCTCTTTGTTTTTCCTGGCTCACTCATCTTCACACCACACTCCTATATA 60
Query 62 TATACCCCCTCTTTCCTC---CGATAGTGAGAGATAGAGTCGATAATTATGGAGAGAATA 118
||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 61 TAT---CCCTCTTTCCTCGATAGATAGTGAGAGATAGAGTCGATAACTATGGAGAGAACA 117
Query 119 ACGACCTTATGGTTTTGGTTTAGTCTTATGATTTTCTTAGGAATCTCTATCAATGGAGGT 178
|| | ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 118 ACCAACTTATGGGTTTGGTTTAGTCTTATGATTTTCTTAGGAATCTCTATTAATGGAGGT 177
Query 179 -TTGTCTCAAGGACAGCAACATGTTATGAAGAAGACACGTTCTTCTGCAGTTGTAGTAGG 237
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 CTT-TCTCAAGGACAGCAACATGTTATGAAGAAGACACGTTCTTCTGCAGTTGTAGTCGG 236
Query 238 AACTGTCTACTGTGACACTTGTTTTAACGGCGCCTTCTCGAAATCACCCAACCACTTAAT 297
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 237 AACTGTCTACTGTGACACTTGTTTTAACGGTGCCTTCTCGAAATCACACAACCACTTAAT 296
Query 298 CTCAGGTGCTTTAGTTGCAGTGGAATGCATTGACGAGAACTCGAAACCGAGTTTCAGACA 357
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 297 CCCAGGTGCTTTAGTTGCTGTGGAATGCATTGACGAGAACTCGAAACCGAGTTTTAGACA 356
Query 358 AGAAGTGAAAACAGACAAGCGCGGCGAATTCAAAGTGAAGCTACCATTCTCTGTGAGCAA 417
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGAGGTGAAAACAGACAAGCGCGGCGAATTCAAAGTGAAGCTACCATTCTCTGTGAGCAA 416
Query 418 ACATGTGAAGAAGATCAAGAGATGCTCTGTGAAGTTGCTAAGTAGCTCACAGCCTTACTG 477
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 ACATGTGAAGAAGATCAAGAGATGCTCTGTGAAGTTGCTAAGTAGCTCACAACCTTACTG 476
Query 478 TTCTATAGCTTCGTCTGCTACTTCTTCTTCTCTCAAACGCCTTAAATCAAACCATCATGG 537
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTCTATAGCTTCGTCCGCTACTTCTTCTTCTCTCAAACGCCTTAAATCAAACCATCATGG 536
Query 538 AGAGAATACTAGGGTTTTCTCTGCAGGGTTCTTCACTTTCAGACCCGAAAACCAACCAGA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGAGAATACTAGGGTTTTCTCTGCAGGGTTCTTCACTTTCAGACCCGAAAACCAACCAGA 596
Query 598 GATTTGTAGCCAAAAACCTATCAATCTCCGCG-GTTCCAAGCCTCTTTTACCGGATCCTT 656
|||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||
Sbjct 597 GATTTGTAGCCAAAAACCAATCAATCTCCCCGCGT-CCAAGCCTCTTTTACCGGATCCTT 655
Query 657 CATTtcctccaccgctccaagatcctcctaatccttcccctctcccaaatctccctatcg 716
|||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 656 CATTCCCTCAACCGATCCAAGATCCTCCTAATCCTTCCCCTATCCCAAATCTCCCCATCG 715
Query 717 ttcctcctCTTCCAAACTTACCTGTTCCAAAGTTACCTGTTCCGGACTTACCTCTTCCTC 776
||||||| ||||| ||||| | || | | | | |||||||||||| ||||||
Sbjct 716 TTCCTCCCCTTCCGAACTT----G--CC----T--C-T-T-CCGGACTTACCTATTCCTC 760
Query 777 TAG-TTCCTCCTCTTCTTCCACCAGGACCTCAGAAATCAGCTTCCTTGCATAACAAGAAA 835
|| |||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||
Sbjct 761 -AGGTTCCTCCTCTTCTTCCCCCAGGACCACAGAAATCATCTTCCGTGCATAACAAGAAA 819
Query 836 TCTGATTCCTTGAAAGACAAGAAAACCGAAGCACTAAAACCCAATTTCTTCTTTCCGCCA 895
||||||||||| |||||||||||| | |||| |||||||||| |||||||||||||||||
Sbjct 820 TCTGATTCCTTTAAAGACAAGAAAGCTGAAGTACTAAAACCCGATTTCTTCTTTCCGCCA 879
Query 896 AACCCGTTAAACCCGCCATCTATCATCCCTCCAAACCCGCTCATTCCTTCTATCCCAACC 955
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 880 AACCCGTTAAACCCGCCATCTATCATCCCTCCGAACCCTCTGATTCCTTCTATCCCAACC 939
Query 956 CCTACTCTCCCTCCAAACCCGCTTATtccttctcccccaagtctccctccaatcccacta 1015
|| |||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||
Sbjct 940 CCAACTCTCCCTCCAAACCCGGTCATTCCTTCTCCCCCAACTCTCCCTCCAATCCCATTA 999
Query 1016 atccctactcccccaactc 1034
|||||| ||||||||||||
Sbjct 1000 ATCCCTTCTCCCCCAACTC 1018
Score = 270 bits (146), Expect = 2e-71
Identities = 182/198 (92%), Gaps = 7/198 (4%)
Strand=Plus/Plus
Query 1242 tccctccggcccctctcatcccgggaatccctcctcTTTCACCTTCCTTTTCTAGTCACC 1301
|||||||| |||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1127 TCCCTCCGATCCCTCTCATCCCTGGAATCCCTCCGGTTACACCTTCCTTTTCTAGTCACC 1186
Query 1302 ATCAACCCTAA-ATTAGCAATCCTTTCCTTACATTTCCAATTATGTAATCTATATGTATC 1360
||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1187 ATCAACCTTAACTTTAGCAATCCTTTCCTCACATTTCCAATTATGTAATCTATATGTATC 1246
Query 1361 ATCC-GCTTTAAATTGTTACTTTTTTCCTCTGCATTTTCACTTGTTGGCTTGTTGTCATT 1419
|||| | ||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1247 ATCCTG-TTTAAATTG-T--TTTTTTCCTCTGCATTTTCACTTGTTGGCTTGTTGT-ATT 1301
Query 1420 TCAATAAATATTGTTTAC 1437
||||||||||||||||||
Sbjct 1302 TCAATAAATATTGTTTAC 1319
Score = 237 bits (128), Expect = 2e-61
Identities = 225/269 (84%), Gaps = 17/269 (6%)
Strand=Plus/Plus
Query 963 TCCCTCCAAACCCGCTTATtccttc--t--c--ccccaagtctccctccaatcccactaa 1016
||||||| ||||| || |||||||| | | |||||| ||||||||||| ||| | |
Sbjct 905 TCCCTCCGAACCCTCTGATTCCTTCTATCCCAACCCCAACTCTCCCTCCAAACCCGGTCA 964
Query 1017 tccctactcccccaactctccctACAATTCCGTTACTTCCTACTCCCCCGACTCCTACTC 1076
| ||| ||||||||||||||||| |||| || ||| | ||| ||||||| ||||| ||||
Sbjct 965 TTCCTTCTCCCCCAACTCTCCCTCCAATCCCATTAATCCCTTCTCCCCCAACTCCAACTC 1024
Query 1077 TGCCACCGATTCCAACAATTCCGACTCTTCCACCTCTTCCGGTTCTTCCACCTGTCCCTA 1136
||||||||||||||||||||||||||||||| | | | ||| |||||||||||||| |
Sbjct 1025 TGCCACCGATTCCAACAATTCCGACTCTTCCGC-T-T-CCG---CTTCCACCTGTCCCAA 1078
Query 1137 TCGTGAATCCGCCTTCACTACCGCCACCACCACCTTCTTTCCCTGTTCCGCTCCCTCCGG 1196
|||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1079 TCGTAAATCCGCCTGCACTACCGCCACCACC---TTCTTTCCCTGTCCCGCTCCCTCCGA 1135
Query 1197 TCCCTGG-ACTCCCTGGCatccctccggt 1224
||||| | ||||||| |||||||||||
Sbjct 1136 TCCCTCTCA-TCCCTGGAATCCCTCCGGT 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5