BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15790.1
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488423 jgi|Araly1|488423|fgenesh2_kg.6__1557__AT5G15790.1 1718 0.0
Ahg947941 jgi|Araly1|947941|scaffold_704170.1 154 2e-36
> Ahg488423 jgi|Araly1|488423|fgenesh2_kg.6__1557__AT5G15790.1
Length=1377
Score = 1718 bits (930), Expect = 0.0
Identities = 1234/1371 (90%), Gaps = 59/1371 (4%)
Strand=Plus/Plus
Query 1 AGCAACAACGCCCACCCACTTTCACACCAACTTGAACACACTACTCCTCCTCCTTCACTT 60
||||||||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||
Sbjct 1 AGCAACAACGCCCACCCACTTTCACACCAACTTCATCACACAACT-CTCCTCCTTCACTT 59
Query 61 TTTCCTTCAATCTCTCTTCTCGCTGACGACTTGGA-AAT-AA-ATCTCTCTCTCTTTCTT 117
||||||| ||||||||||||||||||||| || | ||| || | | || ||||||| ||
Sbjct 60 TTTCCTTGAATCTCTCTTCTCGCTGACGAATT-AACAATAAAGAAC-CT-TCTCTTTTTT 116
Query 118 CGGTCGAGTCCGATCAAAATTGAAAACCCATTGAGTTCCTCGCCAAAAGGTGAAATTTGA 177
| |||||||||||||||||| |||||||| || ||||| || |||||||||||||||||
Sbjct 117 CCGTCGAGTCCGATCAAAATCGAAAACCCGTTTAGTTCTTCATCAAAAGGTGAAATTTGA 176
Query 178 GAGAATGAATCAACGAGAGAAGCTGATTGTTGGTGAAATGTTTGGAGAGTTTCTGTAAAT 237
|||||||||| ||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 177 GAGAATGAAT--------GAAGCAGATTGTTGGTGAAATGTTTGGAGACTTTCTGTAGAT 228
Query 238 AGACGCCTCGGATTTGGCATTGTTAGTGAAGGTTAAAGGAGTTTCCTAGAAG-TT----T 292
|| |||| ||||| | ||| ||| ||||||||||||||||||||| ||| || |
Sbjct 229 CGAAACCTCTGATTTAGTATTCCTAGAGAAGGTTAAAGGAGTTTCCTAAAAGTTTCAAAT 288
Query 293 CAAAGCAA-TTTGCCTCCAAGTTCTTGACTTATAAAACATATTGGAACTAACATTTCAAG 351
|||||||| |||| |||||||||||||| | || ||| ||||||||||||
Sbjct 289 CAAAGCAATTTTGACTCCAAGTTCTTGA---GT------TA---GAATTAACATTTCAAG 336
Query 352 AAAGAAGAGAAGGAGATGGGCTGTGTTTCTTCTTGCTTTGGGGTCGATGACTTTGAGGAT 411
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 337 AAAGAAGAGAAGGAGATGGGCTGTGTTTCTTCTTGCTTTCGGGTCGAAGACTTTGAGGAT 396
Query 412 TACCCCAATCCAAGTAG---TTCTGTTAACAGAAGCTGCCCATGCCCGAGATGTCTTGTT 468
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||
Sbjct 397 TACCCGAATCCAAGTAGTTCTTCTGTTAACAGAACCTGCCCATGCCCGAGATGTCTCATT 456
Query 469 AACAACTTCCTTAACCTGTATATCTCTTTATTCAGAAGAGGCGAAACCCGCTCTCTCCCA 528
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AATAACTTCCTTAACCTGTATATCTCTTTATTCAGAAGAGGCGAAACCCGCTCTCTCCCG 516
Query 529 TCCTCCTTACAGGCTACTAATGTATCGATAGCTACATCAACTTCGTATGATAACTTTATG 588
||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 517 TCCTCTTTACAGGCTACTAATGTATCAATAGCTTCATCTACTTCGTATGATAACTTTATG 576
Query 589 TCTAATACATTCCATTCTACTCCAAGGCCTCTGCCTTATGACGCTGATCCAAGATACTTC 648
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 577 TCTAATACATTCCATTCTACTCCAAGGCCTCTGCCTTATGATACTGATCCAAGATACTTC 636
Query 649 CGGTCAAGGCGTGATTCGCTTGTTTCTAGACGCGATAAGGGTTCAAGTCATTCTCATGAG 708
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 637 CGGTCAAGGCGTGATTCCCTTGTCTCAAGACGCGATAAGGGTTCAAGTCATTCTCATGAG 696
Query 709 GAAGCTGAGCCCTTAAGAAGTGATGCTGATGTGGATTCTGAGTCTTTCTCAGTGGAAGGA 768
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 697 GAAGCTGAGCCCTTAAGAAGCGATGCTGATGTGGATTCTGAGTCTTTCTCAGTGGAAGGA 756
Query 769 AGCAAATGGGCTAACAAGCTTATTATCTCTGGTGAAGATTCCAAAGAAGAGTTCTCTAGA 828
||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 757 AGCAAATGGACTAATAAGCTTATTATCTCTGGTGAAGATTCCAAAGAAGAGTTTTCTAAA 816
Query 829 TCCTCTCGGAGGATTCTTCAGTCAAGGACAATGTCTACTAGTAACGAAGGCCTGTATATA 888
||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||
Sbjct 817 TCCTCTCGGAGGATTCTTCAGTCAAGGACAATGGCTACTGGTAATGAAGGTGTGTATATA 876
Query 889 ACATCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAGAATACATATCAGAGAACCCG 948
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 877 ACTTCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAGAATACACATCAGAGAACCCG 936
Query 949 AAGATTGTTACAAAGTGTTCTCACCATTTCCACCTCAGTTGCATTTATGAATGGATGGAG 1008
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 AAGATTGTTACAAATTGTTCTCACCATTTCCACCTCAGTTGCATTTATGAATGGATGGAG 996
Query 1009 AGAAGTGAAAACTGCCCTGTTTGTGGAAAGGTGATGGAGTTCCACGAAACACCGTAACTT 1068
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 997 AGAAGTGAAAACTGCCCTGTTTGTGGAAAGGTGATGGAGTTCAACGAAACACCGTAACCT 1056
Query 1069 GTTGCCATTGATCCTGTCTTGTACTGCCTAGACCGGACCTGGGGAGATTGACAAGGCAGC 1128
||| |||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 1057 GTTACCATTGATCCCGTCTTGTACTGCCTAAACCGAAGCTGGGGAGATTGACAAGGCAGC 1116
Query 1129 AGAGAGATGTGAATATATTTTTTAACAATATATGATATTGTATATGATGGGGAAATGAGG 1188
|||||||||||||||| |||| |||||| | | | | || |||||
Sbjct 1117 AGAGAGATGTGAATAT-TTTT--AACAAT----G-----G-----G--G---AA-TGAGG 1153
Query 1189 AAACGTCTCTCTGCACGTTTGGCTTATGGAGTTCTGAGGAAACCCTCTTGAGAGAAAACA 1248
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1154 AAATGTCTCTCTGCACGTTTGGCTAATGGAGTTCTGAGGAAACCCTCTAGAGAGAAAACA 1213
Query 1249 ACAGCAGCAGCAGAACAGATGCACACAGGAATCTGACATGTTTCTTAGGATTTGCCTTTG 1308
||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1214 GCAGCAGCAGCAAAACACATGCTCACAGGAATCTGACATGTTTCTTAGGATTTGCCTATG 1273
Query 1309 GCGCAGTGTTTTGTTCAAGGCATGAAACTTTTTACATCATTTTGTATGATT 1359
| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1274 GGGCAGTGTTTTGATCAAGGCATGAAACTTTTTACATCATTTTGTATGATT 1324
> Ahg947941 jgi|Araly1|947941|scaffold_704170.1
Length=706
Score = 154 bits (83), Expect = 2e-36
Identities = 133/157 (85%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 891 ATCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAGAATACATAT-CAGAGAACCCGA 949
||| |||||||||||| | |||||||| || ||||| || |||| | | ||||| || |
Sbjct 506 ATCGGATGATGAAGATATTTGTCCAACCTGCCTTGATGATTACA-CTCCGGAGAATCCAA 564
Query 950 AGATTGTTACAAAGTGTTCTCACCATTTCCACCTCAGTTGCATTTATGAATGGATGGAGA 1009
|||| | || ||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 565 AGATAATCACCAAGTGTTCTCACCATTTCCACCTTAGCTGTATTTATGAATGGATGGAGA 624
Query 1010 GAAGTGAAAACT-GCCCTGTTTGTGGAAAGGTGATGG 1045
||||||||| || |||| || ||||||||||||||||
Sbjct 625 GAAGTGAAA-CTTGCCCCGTCTGTGGAAAGGTGATGG 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57440089460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5