BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15800.2
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941068 jgi|Araly1|941068|scaffold_601612.1 1131 0.0
Ahg927709 jgi|Araly1|927709|scaffold_300166.1 726 0.0
Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1 104 2e-21
> Ahg941068 jgi|Araly1|941068|scaffold_601612.1
Length=790
Score = 1131 bits (612), Expect = 0.0
Identities = 660/682 (97%), Gaps = 7/682 (1%)
Strand=Plus/Plus
Query 368 AATTAAGGTAACAAAAAGAAATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACA 427
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AATTAAGGTAAC-AAAAGAAATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACA 60
Query 428 AAATCAACAGACAAGTAACGTTTGCAAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATCAACAGACAAGTAACGTTTGCAAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATG 120
Query 488 AATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGC 547
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 AATTGTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGC 180
Query 548 TCTATGAGTTTTGCAGCTCCTCAAACATGCTCAAGACACTTGATCGGTACCAGAAATGCA 607
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 181 TCTACGAGTTTTGCAGCTCCTCCAACATGCTCAAGACACTGGATCGGTACCAGAAATGCA 240
Query 608 GCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAG 667
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTATGGCTCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAG 300
Query 668 AATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAGAAATCTTCTTG 727
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 AGTATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAGCGTCAACAGAGAAATCTTCTTG 360
Query 728 GGGAGGATTTAGGACCTTTGAATTCAAAGGAGTTAGAGCAGCTTGAGCGTCAACTGGACG 787
|||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 GGGAGGATCTAGGACCTCTGAATTCAAAGGAGTTAGAACAGCTTGAGCGTCAACTGGACG 420
Query 788 GCTCTCTCAAGCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCGGATC 847
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 GTTCTCTCAAGCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCTGATC 480
Query 848 TTCAAAATAAAGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTCAAAATAAAGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATG 540
Query 908 ATATGATTGGTGTGAGAAGTCATCATATGGGAGGAGGAGGAGGATGGGAAGGTGGTGAAC 967
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 541 ATATGATTGGTGTGAGAAGTCATCATATGGGAGGAGGA------TGGGAAGGCGGTGAAC 594
Query 968 AGAATGTTACCTACGCGCATCATCAAGCTCAGTCTCAGGGACTATACCAGCCTCTTGAAT 1027
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 595 AGAATGTTACCTACGCGCATCATCAAGTTCAGTCTCAGGGACTATACCAGCCTCTTGAAT 654
Query 1028 GCAATCCAACTCTGCAAATGGG 1049
||||||||||||||||||||||
Sbjct 655 GCAATCCAACTCTGCAAATGGG 676
Score = 180 bits (97), Expect = 3e-44
Identities = 109/115 (95%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1082 GGTATGATAATCCGGTATGCTCAGAGCAAATAACTGCGACAACCCAAGCTCAGGCGCAGC 1141
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 676 GGTATGATAATCCGGTATGCTCGGAGCAAATAACTGCGACAACACAAGCTCAGGCGCAGC 735
Query 1142 AGGGAAACGGTTACATCCCGGGGTGGATGCTCTGAGAGTCATGTGCTGTGTTAAA 1196
||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||
Sbjct 736 AGGGAAACGGTTACATCCCAGGGTGGATGCTTTGAGAGTCATGTGATGTGATAAA 790
> Ahg927709 jgi|Araly1|927709|scaffold_300166.1
Length=793
Score = 726 bits (393), Expect = 0.0
Identities = 584/674 (87%), Gaps = 22/674 (3%)
Strand=Plus/Plus
Query 382 AAAGAAATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAAATCAACAGACAA 441
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 16 AAA-AAATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGAACAAAATCAACAGACAA 74
Query 442 GTAACGTTTGC-AAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATGAA-TTGTCTGTTC 499
|| |||||||| ||| |||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 75 GTGACGTTTGCTAAA-CGTAGGAATGGTTTGTTGAAAAAAGCTTATGAGCTT-TCTGTTC 132
Query 500 TCTGTGATGCTGAAGT-TGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTT 558
|||| |||||||| || | |||||||| |||||||||||||||| |||||||| |||||
Sbjct 133 TCTGCGATGCTGAGGTCT-CTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTACGAGTTC 191
Query 559 TGCAGCTCCTCAAACATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCC 618
|||||| |||| ||||||||||||||||| || |||| ||||| || |||||||| |||
Sbjct 192 TGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGTGTAGCTATGGCTCC 251
Query 619 ATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAGAATATCTGAAG 678
||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 252 ATTGAAGTCAACAACAAACCTGCTAAAGAACTTGAGAACAGCTACAGAGAGTATTTGAAG 311
Query 679 CTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAGAAATCTTCTTGGGGAGGAT-TT 737
|| || ||||||||||| || || |||||||| ||||||||||||||||| ||||| ||
Sbjct 312 CTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTCTTGGAGAGGACCTT 371
Query 738 AGGACCTTTGAATTCAAAGGAGTTAGAGCAGCTTGAGCGTCAACTGGACGGCTCTCTCAA 797
|||||| |||| ||||||||| |||||||||| ||||||||||| ||||||||||| ||
Sbjct 372 -GGACCTCTGAACTCAAAGGAGCTAGAGCAGCTGGAGCGTCAACTAGACGGCTCTCTGAA 430
Query 798 GCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCGGATCTTCAAAATAA 857
||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 431 GCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAA 490
Query 858 AGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATGATATGATTGG 917
||||| || ||||||||| |||| ||||||||| ||||||||||||| |||||||| ||
Sbjct 491 GGAGCATATCTTGCTTGAAGCCAACAGAGCTTTGTCAATGAAGCTGGAAGATATGATCGG 550
Query 918 TGTGAGA-AGTCATCATATGGGAGGAGGAGGAGGATGGGAAGGTGGTGA--A-CAGAATG 973
|||||| | ||| ||||| |||||||| | |||||||||||||| | || || |
Sbjct 551 CGTGAGACA-TCACCATAT---AGGAGGAGCA---TGGGAAGGTGGTGATCAACATAACG 603
Query 974 TTACCTACGCG-CATCATCAAGCTCAGTCTCAGGGACTATACCAGCCTCTTGAATGCAAT 1032
|| | || | | |||| ||| ||||| ||||||||||||||||| |||||||||| ||
Sbjct 604 TTGCATATG-GACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAATGTGAT 662
Query 1033 CCAACTCTGCAAAT 1046
|| ||| |||||||
Sbjct 663 CCCACTTTGCAAAT 676
> Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1
Length=1228
Score = 104 bits (56), Expect = 2e-21
Identities = 107/130 (82%), Gaps = 10/130 (8%)
Strand=Plus/Plus
Query 410 TGAAGAGGATAGAGAACAAAATCAACAGACAAGTAACGTT-T-GCAAAGCGTAGGAAC-G 466
||||||||||||||||||| ||||| |||||||| || || | | |||| || | | |
Sbjct 234 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACATTCTCGAAAAGA--AG-AGCTG 290
Query 467 GT-TTGTTGAAGAAAGCTTATGA-ATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTCAT 524
|| || |||||||||||| |||| || ||||||||||||||||||||||||||||| |
Sbjct 291 GTCTT-TTGAAGAAAGCTCATGAGATC-TCTGTTCTCTGTGATGCTGAAGTTGCTCTTGT 348
Query 525 CATCTTCTCC 534
||||||||
Sbjct 349 TGTCTTCTCC 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5