BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15802.1
Length=554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326030 jgi|Araly1|326030|fgenesh1_pm.C_scaffold_6001250 494 4e-139
> Ahg326030 jgi|Araly1|326030|fgenesh1_pm.C_scaffold_6001250
Length=300
Score = 494 bits (267), Expect = 4e-139
Identities = 289/300 (96%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 26 ATGCAGAGTTTAACGTCAAACGAAGTTGCGGGTTTGGCAGTTGGGGCTCTGCTTCTTGGT 85
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1 ATGCAGAGTTTAACGTCGAACGAAGTAGCGGGTTTGGCAGTTGGAGCTCTGCTTCTCGGT 60
Query 86 GCCACCATCGCTGCTCCTAAAGTTGATGCTTTTATCGCTGCTTCTCAGAGAAGATCTCTT 145
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GCCACCATCGCTGCTCCTAAAGTTGATGCTTTCATCGCTGCTTCTCAGAGAAGATCTCTT 120
Query 146 GGCATGTGTCGAAAATGTGGAGATCTTAAGAATGTAGCTTGTGGCCGTTGCAAAGGAACA 205
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GGAATGTGTCGAAAATGTGGAGATCTTAAGAATGTAGCATGTGGCCGTTGCAAAGGAACA 180
Query 206 GGAACAATCAAATCAGGAGGATTCTTTGGTTTCAGTGACTCATCAAACACAAGATCAGTG 265
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GGAACAATCAAATCAGGGGGATTCTTTGGATTCAGTGACTCATCAAACACAAGATCAGTC 240
Query 266 GCTTGCGATAATTGCCAAGCCAAAGGTTGTTTCCCTTGCCCTGAATGCTCAAAATCTTGA 325
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GCTTGCGATAATTGCCAAGCCAAAGGTTGTTTCCCTTGCCCCGAATGCTCAAAATCTTGA 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20222462170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5