BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15810.1
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488427 jgi|Araly1|488427|fgenesh2_kg.6__1561__AT5G15810.1 3175 0.0
Ahg927711 jgi|Araly1|927711|scaffold_300168.1 1648 0.0
> Ahg488427 jgi|Araly1|488427|fgenesh2_kg.6__1561__AT5G15810.1
Length=2114
Score = 3175 bits (1719), Expect = 0.0
Identities = 2008/2141 (94%), Gaps = 45/2141 (2%)
Strand=Plus/Plus
Query 153 CAAACCAGTCGCTAAATTTCGACATCTTTATTCACATATCTATAGATTCAAGCTTTGTGA 212
|||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 CAAACC-TTCGATCACTTTCGACATCTTTATTCACATATCTATAGATTCAAGCTTTGTGA 74
Query 213 TTTGCCATTCGGGTTTCAGATTCGTGTTGGTAATTCAATTTCTGAATCCTCTGCTCCTAA 272
||||||||||||||| |||||||||||| |||||||||||| |||||||||||| ||| |
Sbjct 75 TTTGCCATTCGGGTTACAGATTCGTGTTTGTAATTCAATTTGTGAATCCTCTGCACCTGA 134
Query 273 AGAGAAGAATCTGAGATCAGCAATGGAAACGGATCTCAATGATTATACTGTCATTAAGGA 332
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 135 AGAGAAGAATCTGAGATCAGCAATGGAAACAGATCTCGATGATTATACTGTGATTAAGGA 194
Query 333 AGGAGAAGCTGAGGTTCTTATGCACAAGAAGAACCAAGTCTTCTTCAACAAAGCTCAGGT 392
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 195 AGGGGAAGCTGAGGTTCTAATGCACAAGAAGAACCAAGTCTTCTTCAACAAAGCTCAGGT 254
Query 393 TAACAATAGGGACATGTCTATTGCTGTGCTAAGGGCATTTATAAT-CAAACGCAAGCAAG 451
|||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||
Sbjct 255 TAACAATAGGGACATGTCCATTGCTGTCCTAAGGGCATTTAT-ATCCAAACGCAAGCAAG 313
Query 452 AGCATGAGGCTATGTTATCTAAAAGAGCTAGATCATCTGGGAAAGTGGTTGAGAAGGATG 511
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 314 AGCATGAGGCGATGTTATCTAAAAGAGCTAGATCATCTGGGAAAGTGCTTGAGAAGGATG 373
Query 512 TCTCTGAAACTTCCAAGGAAGAAACTCCTACTGAAAACGGTGACGATAATGGAAAAACCA 571
|||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 374 TCTCTGGAACTTCCAAGGAAGAAAATCCTACTGAAAACGGTGAGGATAATGGTAAAACCA 433
Query 572 ATGGAGAACACGAAGTAACAACTCAGGATGGACCAAAGGAAGCTGCTAAGACCGCATATG 631
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 434 ACGGAGAACACGACGTAACAACTCAGGATGGACCAAAGGAAGCTGCCAAGACCGCATATG 493
Query 632 AATCTGCACGAAGGGAACTCAAACCACCAAGAGTGCTTGAGGCCCTGTCAGCTTCAGGGC 691
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 494 AATCTGCAAGAAGGGAACTCAAGCCACCAAGAGTGCTTGAGGCCCTGTCAGCTTCAGGGT 553
Query 692 TACGGGCTTTGAGGTATGCTCGTGAAGTTGAAGGAATTGGTCAAGTTGTGGCTTTAGATA 751
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TACGTGCTTTGAGGTATGCTCGTGAAGTTGAAGGAATTGGTCAAGTTGTGGCTTTAGATA 613
Query 752 ATGACCCAGCATCGGTTGAAGCCTGCCAGAGAAACATTAAGTTCAATGGTTTGATGTCTA 811
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 614 ATGACCCAGCATCGGTTGAAGCCTGCCAGCGAAACATTAAGTTCAATGGTTTGATGTCTA 673
Query 812 CTTCAAAGGTGGAGTCACATCTTACTGATGCTCGTGTTCACATGCTCAGCCACCCAAAAG 871
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 674 CTTCAAAGGTGGAGTCACATCTTACTGATGCTCGTGTCCATATGCTCAGCCACCCAAAAG 733
Query 872 ATTTTGATGTGGTTGATCTTGACCCATATGGTGCGCCGTCTATTTTCCTTGACTCAGCTG 931
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 734 ATTTTGATGTGGTTGATCTTGACCCATATGGTGCGCCGTCTATTTTCCTTGATTCAGCTG 793
Query 932 TTCAATCAGTTGCCGATGGTGGTTTGCTGATGTGTACAGCAACTGACATGGCAGTGTTAT 991
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TCCAATCAGTTGCCGATGGTGGTTTGCTGATGTGTACAGCAACTGACATGGCAGTGTTAT 853
Query 992 GTGGAGCTAACGGCGAGGTCTGCTATTCCAAATATGGCTCTTATCCACTGAAAGGGAAAT 1051
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 GTGGGGCTAACGGCGAGGTCTGCTATTCCAAATATGGCTCTTATCCACTGAAAGGGAAAT 913
Query 1052 ATTGTCATGAGATGGCTTTGAGGATCCTCCTCGCCAGCATCGAGAGCCATGCAAATCGCT 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 ATTGTCATGAGATGGCTTTGAGGATCCTCCTCGCCAGCATCGAGAGCCATGCAAATCGCT 973
Query 1112 ACAAGCGGTATATTGTTCCTGTTCTATCGGTCCAAATGGATTTCTACGTTCGTGTTTTTG 1171
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 974 ACAAGCGGTATATTGTTCCTGTTCTGTCGGTTCAAATGGATTTCTACGTTCGTGTTTTTG 1033
Query 1172 TCCGCGTCTACACTTCGGCGAGTGCAATGAAGAATACTCCACTAAAGCTCTCATATGTCT 1231
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1034 TCCGCGTTTACACTTCGGCGAGTGCAATGAAGAACACTCCACTAAAGCTCTCATATGTCT 1093
Query 1232 ACCAATGCATTGGTTGTGATTCCTTTCATCTTCAGTCTGTTGGAAGATCTCTCCCTAAGA 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 ACCAATGCATTGGTTGTGATTCCTTTCATCTTCAGTCTGTTGGAAGATCTCTCCCTAAGA 1153
Query 1292 ATAACAGTGTGAGATATCTACCTGGAGTTGGTCCTGTTGTTCCTCAGGATTGCACTCATT 1351
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1154 ATAACAGTGTGAGGTATCTACCAGGAGTTGGTCCTATTGTTCCTCAGGATTGCACTCATT 1213
Query 1352 GTGGAAAGAAATATAATATGGGTGGACCAATATGGTCTGCTCCAATCCACGATCAAGAAT 1411
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 GTGGAAAGAAATATAACATGGGTGGACCAATATGGTCTGCTCCAATCCACGATCAAGAAT 1273
Query 1412 GGGTGAATTCGATACTAAACGGTGTTAAATCCATGAAAGACAGATATCCTGCTTACGACC 1471
|||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1274 GGGTCACTTCGATACTAAGCAGTGTTAAATCCATGAAAGACAGATATCCTGCTTACGACC 1333
Query 1472 GAATTTGCGCTGTTCTTACCACAATCTCAGAGGAATTGCCAGATGTTCCTCTCTTTTTGA 1531
|||||||||||| | | | | | ||||||||||||||||||||||
Sbjct 1334 GAATTTGCGCTG-----A--A---T-T--G--------CCAGATGTTCCTCTCTTTTTGA 1372
Query 1532 GCCTGCATAGTCTCTCTGCAACGCTAAAATGTACTTCACCATCAGCTGCTTTGTTTCGAT 1591
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1373 GCCTTCATAGTCTCTCTGCAACACTAAAATGTACTTCACCGTCAGCTGCTTTGTTTCGAT 1432
Query 1592 CAGCGGTAATCAATGCAAAGTACCGTGTCTCTGGGTCCCATGTGAACCCGCTTGGGATTA 1651
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1433 CAGCGGTAATCAATGCAAAGTACCGTGTCTCTGGGTCCCATGTGAATCCGCTGGGGATTA 1492
Query 1652 AAACTGATGCTCCAATGGAGATTATCTGGGACATCATGCGGTGCTGGGTGAAAAATCATC 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 AAACTGATGCTCCAATGGAGATTATCTGGGACATCATGCGGTGCTGGGTGAAAAATCATC 1552
Query 1712 CCATAAAGCCGCAATCACCTGAACATCCTGGAAGTGTGATTCTATCTAAAGAACCATCTC 1771
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1553 CCATAAAGCCGCAATCACCTGAACATCCCGGAAGTGTGATTCTATCTAAAGAACCATCTC 1612
Query 1772 ATCAGGCTGACTTTTCGCGCCACGTCGGTTCGCTTAGTAAAGCACAGGCGAAGAAAGTAG 1831
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1613 ATCAGGCTGACTTTTCGCGCCACGTCGGTTCGCTTAGCAAAGCACAGGCGAAGAAAGTAG 1672
Query 1832 CCCGGTTTCTACCAAACCCAGAGAAGCATTGGGGTCCCAAGATAAGGGCAGGTCGTACAA 1891
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1673 CCCGGTTTCTACCAAACCCAGAGAAGCATTGGGGTCCCAAGATAAGGGCTGGTCGTACAA 1732
Query 1892 TCACAAGCAAACATGTATCGCTTCTTGGTCATGAAGCAGTAAACGGTCATCTCAATAACA 1951
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1733 TCACAAGCAAACACGTATCGCTTCTTGGTCATGAAGCAGTTAACGGTCATCTCAATGGCA 1792
Query 1952 ATCATAaagaagcaggagacgaagaagaagaagaagaagaagaagagcccgaagaagaTA 2011
|||||||||||||||||| ||||| ||||||||| | ||| |||||||||
Sbjct 1793 ATCATAAAGAAGCAGGAGCCGAAGTAGAAGAAGA-GC----------CCC-AAGAAGATA 1840
Query 2012 TCATCGAGGGTGAGCCAGAGCTCAAACGCCAAAAGACAACAGAAGATTTTGCCTCAACAT 2071
|||| |||||||||||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct 1841 TCATTGAGGGTGAGCCAGATCTTAAACGCCAAAAGACAACAGAGGATACTGCCTCAACAT 1900
Query 2072 CATAGGGCGAATGTTTACACAAGAattttatatttttgtttgcaaaagattttctctttt 2131
||||||||||||||| ||||||| ||| |||| |||||||||||||||| | |||||||
Sbjct 1901 CATAGGGCGAATGTTAACACAAGGCTTT-ATATCTTTGTTTGCAAAAGATATACTCTTTT 1959
Query 2132 cttttcttaa--acatttGTTATCACAGTTCTGCGTTTTTGATCCTAGCACTTCACCATT 2189
||||| || ||||||||||||| |||||||| |||||||||| ||||||| | ||||
Sbjct 1960 CTTTTTTTTTTTACATTTGTTATCAGAGTTCTGCATTTTTGATCCAAGCACTTGAGCATT 2019
Query 2190 TTTGCAGACTTCTACAACAAACAACTTATAAGTCTCTATTGGATTCTTCAGATCTGTTAG 2249
||||||||||| | | |||||||||||||||||| || ||||||||||||| ||||||
Sbjct 2020 TTTGCAGACTTG-A-A-CAAACAACTTATAAGTCT--AT-GGATTCTTCAGATTTGTTAG 2073
Query 2250 AGACTATTTaaaaaaaCCTTGTAATGTGTAAGTTTTCATCA 2290
|||||||| ||||||||||||||| ||||| |||||||||
Sbjct 2074 TGACTATTTCAAAAAACCTTGTAATATGTAACTTTTCATCA 2114
> Ahg927711 jgi|Araly1|927711|scaffold_300168.1
Length=1810
Score = 1648 bits (892), Expect = 0.0
Identities = 1457/1728 (84%), Gaps = 45/1728 (3%)
Strand=Plus/Plus
Query 291 AGCAATGGAAACGGATCTCAATGATTATACTGTCATTAAGGAAGGAGAAGCTGAGGTTCT 350
|||||||||||||||||| ||||| |||||||| || |||||||||||||||||| ||||
Sbjct 17 AGCAATGGAAACGGATCTGAATGACTATACTGTTATCAAGGAAGGAGAAGCTGAGATTCT 76
Query 351 TATGCACAAGAAGAACCAAGTCTTCTTCAACAAAGCTCAGGTTAACAATAGGGACATGTC 410
|||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 77 CATGCACAAGAAGAATCAAGTCTTCTTCAATAAAGCTCAGGTGAACAATAGAGACATGTC 136
Query 411 TATTGCTGTGCTAAGGGCATTTATAATC-AAACGCAAGCAAGAGCATGAGGCTATGTTAT 469
|||||||| ||||||| |||||| ||| |||||||||||||||||||| |||| || ||
Sbjct 137 CATTGCTGTTCTAAGGGAATTTAT-ATCAAAACGCAAGCAAGAGCATGAAGCTAAGTCAT 195
Query 470 CTAAAAGAGCTAGATCATCTGGGAAAGTGGTTGAGAAGGATGTC-TCTGAAACTTCCAAG 528
|||||||| ||||| || || |||||| | |||||||||| | |||||| ||||||||
Sbjct 196 CTAAAAGAACTAGACCAGCTTCCAAAGTGATCGAGAAGGATG-CTTCTGAAGCTTCCAAG 254
Query 529 GAAGAAACTCCTACTG-AA-AACGGTGACG-ATAATGG-AAAAACCAATGGAGAACA-C- 582
||||||||||| | | || |||||| | | ||||||| | || || | || || |
Sbjct 255 GAAGAAACTCCGA--GCAAGAACGGT-ATGAATAATGGTGATCACGAA-GTAG--CATCT 308
Query 583 GAAGTAACAACTC-AG-GATGGACCAAAGGAAGCTGCTAAGACCGCA-TATGAATCTGCA 639
|||| | || | || || | |||| || |||||||||| || | | || ||||
Sbjct 309 GAAG-ATGGAC-CAAGCTCTGCATCAAAAGACCCTGCTAAGACAACAGAACG-ATTTGCA 365
Query 640 CGAAGGGAACTCAAACCACCAAGAGTGCTTGAGGCCCTGTCAGCTTCAGGGCTACGGGCT 699
| || |||| ||| ||||||| ||| |||||||| |||||||||| ||| ||||||||
Sbjct 366 CCTAGAGAACCCAAGCCACCAAAAGTTCTTGAGGCTTTGTCAGCTTCTGGGTTACGGGCT 425
Query 700 TTGAGGTATGCTCGTGAAGTTGAAGGAATTGGTCAAGTTGTGGCTTTAGATAATGACCCA 759
| || ||||| || ||| | |||||||||||||| |||||||| || |||||||| |
Sbjct 426 CTAAGATATGCACGCGAAATAGAAGGAATTGGTCAGGTTGTGGCGTTGGATAATGATTTA 485
Query 760 GCATCGGTTGAAGCCTGCCAGAGAAACATTAAGTTCAATGGTTTGA-TGTCTACTTCAAA 818
|||||||| ||||| |||||||||||||| ||||||||||| | | || ||| ||||||
Sbjct 486 GCATCGGTCGAAGCTTGCCAGAGAAACATAAAGTTCAATGG-CTCAGTGGCTATTTCAAA 544
Query 819 GGTGGAGTCACATCTTACTGATGCTCGTGTTCACATGCTCAGCCACCCAAAAGATTTTGA 878
|||||||||||||| ||| ||||||||||| || ||||| | |||||| ||||| |||||
Sbjct 545 GGTGGAGTCACATCATACCGATGCTCGTGTCCATATGCTTACCCACCCTAAAGAATTTGA 604
Query 879 TGTGGTTGATCTTGACCCATATGG-TGCGCCGTCTATTTTCCTTGACTCAGCTGTTCAAT 937
||||||||||||||| |||||||| | | |||||||||||||||||||| ||| ||||||
Sbjct 605 TGTGGTTGATCTTGATCCATATGGAT-CACCGTCTATTTTCCTTGACTCGGCTATTCAAT 663
Query 938 CAGTTGCCGATGGTGGTTTGCTGATGTGTACAGCAACTGACATGGCAGTGTTATGTGGAG 997
|||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 664 CAGTCACGGATGGTGGATTGCTAATGTGTACAGCAACTGACATGGCAGTGTTATGTGGTG 723
Query 998 CTAACGGCGAGGTCTGCTATTCCAAATATGGCTCTTATCCACTGAAAGGGAAATATTGTC 1057
|||||| || || ||||||||||||||||| ||||| ||| ||| || ||| |||||||
Sbjct 724 GTAACGGTGAAGTTTGCTATTCCAAATATGGTTCTTACCCATTGAGAGCGAAGTATTGTC 783
Query 1058 ATGAGATGGCTTTGAGGATCCTCCTCGCCAGCATCGAGAGCCATGCAAATCGCTACAAGC 1117
|||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 784 ATGAGATGGCTTTGCGGATCCTTCTTGCCAGCATCGAGAGCCATGCAAACCGCTACAAGC 843
Query 1118 GGTATATTGTTCCTGTTCTATCGGTCCAAATGGATTTCTACGTTCGTGTTTTTGTCCGCG 1177
||||||||||||| || ||||| || |||||||||||||| |||||||||||||||||||
Sbjct 844 GGTATATTGTTCCGGTGCTATCTGTGCAAATGGATTTCTATGTTCGTGTTTTTGTCCGCG 903
Query 1178 TCTACACTTCGGCGAGTGCAATGAAGAATACTCCACT-AAAGCTCTCATATGTCTACCAA 1236
| ||||| |||||||||||||||||||| |||||| | ||| ||||| || || || |||
Sbjct 904 TTTACACCTCGGCGAGTGCAATGAAGAACACTCCATTGAAA-CTCTCTTACGTATATCAA 962
Query 1237 TGCATTGGTTGTGATTCCTTTCATCTTCAGTCTGTTGGAAGATCTCTCCCTAAGAATAAC 1296
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 963 TGCATTGGTTGTGATTCATTTCATCTTCAACCTGTTGGAAGATCTCTCCCTAAGAACAAC 1022
Query 1297 AGTGTGAGATATCTACCTGGAGTTGGTCCTGTTGTTCCTCAGGATTGCA-CTCATTGTGG 1355
|||||||| |||||||| | | ||||||| ||||| |||||||||| | || |||||
Sbjct 1023 AGTGTGAGGTATCTACCAGCAATTGGTCCGGTTGTGAAGCAGGATTGCAAC-CACTGTGG 1081
Query 1356 AAAGAAATATAATATGGGTGGACCAATATGGTCTGCTCCAATCCACGATCAAGAATGGGT 1415
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1082 GAAGAAATATAACATGGGTGGACCAATATGGTCTGCTCCAATGCATGATCAAGAATGGGT 1141
Query 1416 GAATTCGATACTAAACGGTGTTAAATCCATGAAAGACAGATATCCTGCTTACGACC-GAA 1474
|| ||||||| ||||| |||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 1142 GACTTCGATATTAAACAGTGTAAAATCCATGAAAGACAGATATCCTGCTTATGACCTGA- 1200
Query 1475 TTTGC-GCTGTTCTTACCACAATCTCAGAGGAATTGCCAGATGTTCCTCTCTTTTTGAGC 1533
| | | ||||| ||||| ||| |||| |||||||||| ||||||||||| ||||||||
Sbjct 1201 TCT-CTGCTGTACTTACTACAGTCTCCGAGGAATTGCTGGATGTTCCTCTGTTTTTGAGT 1259
Query 1534 CTGCATAGTCTCTCTGCAACGCTAAAATGTACTTCACCATCAGCTGCTTTGTTTCGATCA 1593
|| |||| ||| | ||| || ||||| || | ||||||||||||||| |||||||||||
Sbjct 1260 CTACATAATCTTTGTGCGACACTAAAGTGCATTTCACCATCAGCTGCAATGTTTCGATCA 1319
Query 1594 GCGGTAATCAATGCAAAGTACCGTGTCTCTGGGTCCCATGTGAACCCGCTTGGGATTAAA 1653
||||| || ||||| || |||||| |||| ||| | |||||||| |||||||| || |||
Sbjct 1320 GCGGTTATTAATGCTAATTACCGTATCTCGGGGACTCATGTGAATCCGCTTGGCATGAAA 1379
Query 1654 ACTGATGCTCCAATGGAGATTATCTGGGACATCATGCGGTGCTGGGTGAAAAATCATCCC 1713
||||||||||| |||||| ||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1380 ACTGATGCTCCTATGGAGGTTATCTGGGACATTATGCGCTGCTGGGTGAAGAATCATCCC 1439
Query 1714 ATAAAGCCGCAATCACCTGAACATCCTGGAAGTGTGATTCTA-TCTAAAGAACCATCTCA 1772
|||||| ||||||| ||||| || || || |||||||| || || ||||||||||| ||
Sbjct 1440 ATAAAGGCGCAATCGCCTGAGCAACCCGGTAGTGTGAT-CTTGTCCAAAGAACCATCACA 1498
Query 1773 TCAGGCTGACTTTTCGCGCCACGTCGGTTCGCTTAGTAAAGCACAGGCGAAGAAAGTAGC 1832
| ||| ||| |||||||| ||| | |||||||| || || |||||||| |||||||||||
Sbjct 1499 TGAGGTTGATTTTTCGCGTCACATTGGTTCGCTGAGCAAGGCACAGGCAAAGAAAGTAGC 1558
Query 1833 CCGGTTTCTACCAAACCCAGAGAAGCATTGGGGTCCCAAGATAAGGGCAGGTCGTACA-A 1891
|| ||||| ||||| |||||||||||||||||||| ||| | ||||| ||||| || |
Sbjct 1559 TCGTTTTCTGCCAAATCCAGAGAAGCATTGGGGTCCAAAGCTTAGGGCTGGTCGC-CAGA 1617
Query 1892 TCACAAGCAAACATGTATCGCTTCTTGGTCATGAAGCAGTAAACGGTCATCTCAAT-AAC 1950
| || |||||||||||||| ||| |||||||||||||||| || |||||||| || |||
Sbjct 1618 TTACGAGCAAACATGTATCTCTTATTGGTCATGAAGCAGTCAATGGTCATCTTAACCAAC 1677
Query 1951 AATCATAaagaagcaggagacgaagaagaagaagaagaag-aagaaga 1997
| | | ||||| | | | ||||| ||||||| ||| | |||||||
Sbjct 1678 ACCC-TGAAGAA-CTTAA-A-GAAGATGAAGAAGCAGA-GCAAGAAGA 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87112390315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5