BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15820.1
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941071 jgi|Araly1|941071|scaffold_601615.1 957 0.0
> Ahg941071 jgi|Araly1|941071|scaffold_601615.1
Length=1078
Score = 957 bits (518), Expect = 0.0
Identities = 916/1095 (84%), Gaps = 79/1095 (7%)
Strand=Plus/Plus
Query 62 CAATGTCGTCGGCGAAACTTTTCGGTTGTTCTATTAACGTT-AACGTTGAGGCAG-AGGA 119
||||||||||||||||||||||||||||||||||||||||| || | |||| || |||
Sbjct 19 CAATGTCGTCGGCGAAACTTTTCGGTTGTTCTATTAACGTTGAA-GCAGAGGAAGAAGG- 76
Query 120 AGAAGAAGGCGGTGACGGTGGTAGCTCAACCA-ACGTGGAGGTTTCTCGATCTGGTAACC 178
| | ||||| | ||||||||||| | | ||||||||||||||||||||||| ||
Sbjct 77 CGGCGGCGGCGGCGGTGGTGGTAGCTC-AGTAGCCGTGGAGGTTTCTCGATCTGGTATCC 135
Query 179 AACCGGATTGTGAAGCTATGAGTTTCTCCAATCAGATG-GAAATCGGCG-TTCGCAATAC 236
|||||| ||| |||||||||||||| || ||||||| | ||| |||| | || |||||||
Sbjct 136 AACCGGGTTGCGAAGCTATGAGTTTGTCTAATCAGA-GAGAATTCGGTGATT-GCAATAC 193
Query 237 ATATTACCAGTTTCTAGAGTCGAATTCAGATTCTGGATCGGATTCTATGTATGCAGAACC 296
||||| | | ||| |||| |||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 194 ATATTTCAAATTTTTAGACTCGAATTCAGATTCTGAATCGGCTTCTATGGATGCAGAACC 253
Query 297 TGAATTCATCGATTTCTTCGATCGAGAGTCGTACGAGGTCGACACGGTCCGTGAGGTTTG 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 254 CGAATTCATCGATTTCTTCGATCGAGAGTCGTACGAGGTCGACACGGTTAGTGAGTTTTG 313
Query 357 TGTAAGTTCGAATCAGAGGGTTA-GTACTCCAGGTTATTTCAATATTTGGGATCAGGA-- 413
| |||||||||||||||||| | ||||| |||||| ||||||||||||||| ||||
Sbjct 314 TTTAAGTTCGAATCAGAGGG-CATGTACTTCAGGTTTTTTCAATATTTGGGAGGAGGATG 372
Query 414 -TGTAGATTTAGGGCTTGGAATCGGGTTAGGTTCAAGGTC-GGGTTCGGGTCAGTTACCT 471
|||||| |||||||||||||||||||||| |||| |||| ||| ||||||||||||| |
Sbjct 373 TTGTAGAATTAGGGCTTGGAATCGGGTTAGCTTCAGGGTCAGGG-TCGGGTCAGTTACGT 431
Query 472 GGTGATTCAGGT--GG---GG--TT---G--GGGTCGAAGT-TGGTAGGGGTGTTACTCC 518
| |||||||||| || || || | |||||||| | ||||| |||| |||||||
Sbjct 432 GATGATTCAGGTAGGGTTTGGAATTCGGGTCGGGTCGAA-TCTGGTACGGGTTTTACTCC 490
Query 519 TGTTGAGTATAATCTCTTTGGAGAGGAAGCTATGGTGGTTGATGAAGTATTGGAATGGGA 578
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 491 GGTTGAGTATAATCTCTTTGTTGAAGAAGCTATGGTGGTTGATGAAGAATTGGAATGGGA 550
Query 579 GAATTTC-AATAACGCTATCCACTTGGTTCAAGAACCTG-CCTATGCTAGTATGGAGGGa 636
||| ||| || ||| || ||| |||||||||| ||| || | | |||| | |||
Sbjct 551 GAA-TTCGCATGACGGGATTAACTGGGTTCAAGAATCTGTCC-AAGTTAGTCT----GGA 604
Query 637 gaagaagaagaagaagaagaCGAAGTAGTAATGGAATTTGCAGCATCC-AT-TTATAGTG 694
| |||||||||| | | | ||| | | | ||| ||||||| || ||| | ||
Sbjct 605 G--GAAGAAGAAGTA-ATG--GAA-T--T--T--CCTTT--AGCATCCAATATTA-A-TG 648
Query 695 ATG-CTTGGGAAATATTATTGTACGATAACATGACA-AACTCTGCTCCTATGGATTTGGA 752
||| ||| || | |||| |||| |||| || || ||||||||||||||||||||
Sbjct 649 ATGCCTT---TCAT-GTCTTGTGGGATACCATGGCAGAA-TCTGCTCCTATGGATTTGGA 703
Query 753 TGTTGAAGT-TTGGCTAGATAGTGT-AGATGGATATGC-TCCTATGGATTACAATGCTAT 809
| ||| ||| ||||||||||||| | || | || | | || | | ||||||||||||||
Sbjct 704 TATTG-AGTATTGGCTAGATAGTATAAG-T-GA-A--CATCATGTAGATTACAATGCTAT 757
Query 810 CATAGGACAAATGTTTGATAACG-AGACTGGAATCAAAGGAACTCCTCCTGCATCCAAAA 868
|||||||||||||||||||||| || |||||| || |||| |||||||||||||||||
Sbjct 758 TATAGGACAAATGTTTGATAACGAAG-CTGGAACCATGGGAAGTCCTCCTGCATCCAAAA 816
Query 869 GTGTAGTAGATGGTCTTCCTGATGTGGAGC-TTACCATTGAAGAATTGAGCAGT-GTGAG 926
|||||||| ||| ||||||||||||||| | ||||||||||||||||||||| | | ||
Sbjct 817 GTGTAGTAAATGATCTTCCTGATGTGGA-CTTTACCATTGAAGAATTGAGCAATGGGGA- 874
Query 927 CATTGTTTGCGCGATATGCAAAGATGAGGTTGTGTTTAAGGAGAAAGTTAAGAGGCTTCC 986
||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 875 CATCGTTTGCGCGATCTGCAAAGATGAGGTTGTGGTTAAGGAGAAAGTTAAGAGGCTTCC 934
Query 987 TTGTAAGCATTACTATCATGGAGAGTGTATAATACCTTGGTTGGGGATAAGGAATACTTG 1046
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 935 TTGTAAGCATTACTTTCATGGAGAATGTATAATACCTTGGTTGGGGATAAGGAATACATG 994
Query 1047 CCCGGTTTGTCGGCATGAGCTTCCTACTGATGATCTGGAGTATGAAAGGAAGAGGAGAGC 1106
||||||||||||| ||||||| ||||||||||||||||| ||||||||| | ||||||||
Sbjct 995 CCCGGTTTGTCGGTATGAGCTACCTACTGATGATCTGGAATATGAAAGGCATAGGAGAGC 1054
Query 1107 ATGAAGGCGTGGTAG 1121
||||||||| |||||
Sbjct 1055 ATGAAGGCGCGGTAG 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48873579594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5