BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15830.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488428 jgi|Araly1|488428|fgenesh2_kg.6__1562__AT5G15830.1 1234 0.0
> Ahg488428 jgi|Araly1|488428|fgenesh2_kg.6__1562__AT5G15830.1
Length=818
Score = 1234 bits (668), Expect = 0.0
Identities = 777/827 (94%), Gaps = 17/827 (2%)
Strand=Plus/Plus
Query 1 ATTAAACTCACCCTCTTTGAGTTCTAAagagagagagagaAATTGACCATGCAGCCAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTAAACTCACCCTCTTTGAGTTCTAAAGAGAGAGAGAGAAATTGACCATGCAGCCAAAT 60
Query 61 TATGATAGCTCAAGTCTTaacaacatgcaacaacaagactacttcaacttgaacaactac 120
|| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 61 TACGATAGCTCAAGTCTTAACAACATGCAACAACAAGACTACTTCCACTTGAAC---TAC 117
Query 121 tacaacaacttaaacccttcaaccaataacaacaacctcaaTATCCTCCAATACCCTCAA 180
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 118 TACAACAACTTAAACCCTTCAACCAATAACAACAATCTCAATCTCCTCCAATACCCTCAA 177
Query 181 ATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCCACAACTTCCGATGACGCA 240
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 178 ATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCTACGACTTCCGATGACGCA 237
Query 241 ACTGAAGAAATCTTCGTCATCAACGAGAGGAAGCAAAGACGTATGGTATCTAACAGAGAG 300
|| |||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 238 ACAGAAGGAATCTTTGTCATCAATGAGAGGAAGCAACGACGTATGGTATCTAACAGAGAG 297
Query 301 TCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTTCTCTCACAGGTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 TCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTTCTTTCACAGGTT 357
Query 361 GCTTGGCTTCGAAGCGAGAACCACCAGCTTTTAGATAAGCTTAACCAAGTCTCCGACAAC 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 358 GCTTGGCTTCGAAGCGAGAACCACCAGCTTCTAGATAAGCTTAACCAAGTCTCCGACAAC 417
Query 421 AATGATCTTGTTATTCAAGAGAACTCGAGTCTTAAAGAAGAAAACTTGGAGCTTCGTCAG 480
||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 418 AATGATCGTGTTATTCAAGAGAACTTGAGCCTTAAAGAGGAAAACTTGGAGCTTCGTCAA 477
Query 481 GTTATCACATCCATGAAGAAGCTTGGAGGAGGCATACATGACAAATATTCTTCTCCGTCG 540
|||||||||||| ||||||||||||||||||| || |||||||||||||||||| | ||
Sbjct 478 GTTATCACATCCGTGAAGAAGCTTGGAGGAGGGATTCATGACAAATATTCTTCTTCTTC- 536
Query 541 TCTATGGATGAATTGGATCAAGACTTTTCTTCTATCACAGATGATCCAAGAACTCATCAT 600
| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 537 -C-ATGGATGAATTGGATCAAGACTTCTCTTCTATTACAGATGATCCAAGAACGCATCAT 594
Query 601 CCATCATGAGT--TG-TTCTGATCGAGAAAAACATTACTTCAAGTTTCTGCCTCTAATCT 657
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CCATCATGAGTACTTATTCTGATCGAGAAAAACATTACTTCAAGTTTCTGCCTCTAATCT 654
Query 658 TATCTATTTTCTTTCTTTGGTATCACTTTTTAAACCGTTTAACTACGTACCAAAGTTTGG 717
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 655 -ATCTATTTTCTTTCTTTGGTATCACTTTTTTAACGGTTTAACTACGTACCAAAGTTTGG 713
Query 718 GTTTTATTTGTTTTTCTGTTGTTTTGTCAGAAGATAATTAAATGATGGATATTTGAAGAT 777
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 714 GTTTTATTTGTTTTACTGTTGTTTTGTCAGATGATAATTAAATGATGGATATTTGAAGA- 772
Query 778 GATGCTGTAAACAAAGAT-TTAT-AATTAT---ATACATAAATTTGG 819
||| |||||||||| || |||| |||||| ||||||||||||||
Sbjct 773 GATACTGTAAACAA-GAACTTATTAATTATTCTATACATAAATTTGG 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5