BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15860.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488435 jgi|Araly1|488435|fgenesh2_kg.6__1569__AT5G15860.1 2246 0.0
Ahg903036 jgi|Araly1|903036|Al_scaffold_0003_164 966 0.0
> Ahg488435 jgi|Araly1|488435|fgenesh2_kg.6__1569__AT5G15860.1
Length=1542
Score = 2246 bits (1216), Expect = 0.0
Identities = 1471/1585 (93%), Gaps = 53/1585 (3%)
Strand=Plus/Plus
Query 1 GTGTAGAAGGAAATGGAAAGCGCACAAAAGCGAAGATAACAAAAAGAGTTTGAAATTCAA 60
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1 GTGGAGAAGGAAATGGAAAGCGCACAAAAGCGAAGATGACAAAAAAAGTTTGAAATTCAA 60
Query 61 AAGAGAAGAGCAACACGAAGAATCTTGGAATTCGAGATCCACTATTTCACGGCGGAAAAG 120
|||||||| | || ||| || || ||||| | | | | || |
Sbjct 61 AAGAGAAG-G-AATTCGA-GA-TC--------CGAGA---AG-A----A-G----AA--G 93
Query 121 ATGCA-TTCGCCTCTTCAGACTCAGCAGCCGGAGCAGCGATGCTGGCCGATGACCTCGAC 179
||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 94 ATGCACTTC-CCTCTTCAGACTCAGCAGCCGGAGCAGCGATGCCGGCCGATGACCTCGAC 152
Query 180 GGTATCGGAGATCGAGGAAGTTCTACCCGATGAGGACTCCGATAGAACGACTCTTCTTAA 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 153 GGTATCGGAGATCGAGGAAGTTATACCCGATGAGGACTCCGATAGAACGACTCTTCTTAA 212
Query 240 CGGTGAACCGTTACGTCGTCGAGTTTCCGGGAAGTCGCCGGTTGACGAAGGACCTCGTCG 299
|||||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 213 CGGTGAACCGTTGCGTCGTCGAGTTTCCGGTAAGTTACCGGTGGACGAAGGACCTCGTCG 272
Query 300 GATTTTCCGGCAGCAATCGTTCGGTCGCGATATCGGCCACGCGGCAGCTGAAACGTATCT 359
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 273 GATTTTCCGGCAGCAATCGTTCGGCCGCGATATCGGCCACGCGGCAGCTGAGACGTACCT 332
Query 360 AATTACTGGACTTAGCTTCAAGCTTCTTCGATACCTCGGGGTAGGCTATCGATGGATGAC 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 333 AATTACTGGACTTAGCTTCAAGCTTCTTCGTTACCTCGGGGTAGGCTATCGATGGATGAC 392
Query 420 AAAATTACTTGCCCTTACATGTTATGCTATGCTTCTTATGCCTGGCTTTCTTCAAGTTGC 479
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 393 AAAATTACTTGCCCTTACATGTTACGCTATGCTGCTTATGCCTGGCTTTCTTCAAGTTGC 452
Query 480 ATATAGTTATTTTTTCTCAAAGCAAGTCCGGAGGAGTATAGTGTATGGAGATCAACCAAG 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATATAGTTATTTTTTCTCAAAACAAGTCCGGAGGAGTATAGTGTATGGAGATCAACCAAG 512
Query 540 GAACAGGCTGGATCTGTACTTGCCAAGCAACAACGATGGCTTGAAGCCGGTTGTGGTTTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GAACAGGCTGGATCTGTACTTGCCAAGCAACAACGATGGCTTGAAGCCGGTTGTGGTTTT 572
Query 600 TGTGACGGGTGGAGCTTGGATTATTGGGTACAAAGCTTGGGGCTCGCTCTTGGGAATGCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TGTGACGGGTGGAGCTTGGATTATTGGGTACAAAGCTTGGGGCTCGCTCTTGGGAATGCA 632
Query 660 GCTAGCAGAAAGAGATATCATTGTAGCATGCCTTGACTACAGGAACTTTCCTCAGGGAAC 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GCTAGCAGAAAGGGATATCATTGTAGCATGCCTTGACTACAGGAACTTTCCTCAGGGAAC 692
Query 720 AATTAGTGATATGGTGACTGATGCTTCTCAAGGAATCTCATTTGTCTGCAATAACATCTC 779
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 693 AATTAGTGATATGGTGACTGATGCTTCTCAAGGAATCTCATTTGTCTGCAATCACATCTC 752
Query 780 TGCATTTGGAGGTGACCCCAACAGGATCTACCTGATGGGGCAATCAGCTGGTGCCCATAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TGCATTTGGAGGTGACCCCAACAGGATCTACCTGATGGGGCAATCAGCTGGTGCCCATAT 812
Query 840 AGCCGCTTGTGCTCTATTGGAACAAGCTACTAAAGAATTAAAAGGAGAGAGCATCTCCTG 899
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 813 AGCCGCTTGTGCTCTGTTGGAACAAGCTACTAAAGAATCAAAAGGAGAAAGCATCTCCTG 872
Query 900 GACAGTGTCCCAGATAAAAGCTTATTTTGGATTATCTGGAGGGTACAATCTATACAAGTT 959
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 873 GAGGGTGTCCCAGATAAAAGCTTATTTCGGATTATCTGGAGGGTACAATCTATACAATTT 932
Query 960 GGTTGATCACTTCCATAATCGGGGTCTGTATCGCTCGATTTTCCTAAGCATAATGGAAGG 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 933 GGTTGATCACTTCCATAATCGGGGACTGTATCGCTCGATTTTCCTAAGCATAATGGAAGG 992
Query 1020 AGAAGAGTCCTTTGAGAAATTCTCTCCGGAAGTAAGACTGAAAGACCC-AGTTGTTGGAA 1078
||| ||||||||| | ||||||||||| ||||||||| |||||||||| | |||||| ||
Sbjct 993 AGAGGAGTCCTTTAAAAAATTCTCTCCAGAAGTAAGATTGAAAGACCCCA-TTGTTGAAA 1051
Query 1079 AAGCTGCT-TCTCTTTTACCTCCTATTATACTTTTCCACGGATCCTCAGATTATTCCATA 1137
|||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1052 AAGCTG-TGTCTCTATTACCTCCTATTATACTTTTCCATGGATCCTCAGATTATTCCATA 1110
Query 1138 CCATGCGATGAAAGCAAAACTTTTACAGACGCTCTGCAAGCTGTTGGAGCAAAAGCCGAG 1197
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1111 CCATGCGATGAAAGCAAAACTTTTACAGAGGCTCTCCAAGCTGTTGGAGCCAAAGCCGAG 1170
Query 1198 CTTGTTTTATACAGCGGAAAGACACATACTGACTTATTTCTTCAGGATCCCTTACGAGGA 1257
||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1171 CTTGTTTTATACAGCGGAAAGACACATACCGATTTATTTCTTCAGGATCCCTTAAGAGGC 1230
Query 1258 GGTAAAGACGAACTCTTTGATGACATAGTCTCTGTGATACATGCGGAGGACAATGATGGG 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1231 GGTAAAGACGAACTCTTTGATGACATAGTCTCTGTGATACATGCGGAGGACAATGACGCG 1290
Query 1318 CTGACCAAAGACTCGTTGGCTCCTCCCAGAAAGCGTCTTGTACCAGAGTTGTTACTGAAA 1377
||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1291 CTGACGAAAGACTCATTGGCTCCTCCCAGAAAGCGTCTTGTCCCAGAGTTGTTGCTGAAA 1350
Query 1378 CTGGCTCGTGAGATTAGCCCTTTCTGACTGCCAAGAAAG-GAAAACAAGCTTTGTTTGTT 1436
|||||||||||| ||||||||||||||||||||| ||| ||||| |||||| |||||||
Sbjct 1351 CTGGCTCGTGAGGTTAGCCCTTTCTGACTGCCAAAAAAACGAAAAGAAGCTT-GTTTGTT 1409
Query 1437 GATCCTCAGTTTTT--ACCTTTGTTAGTTGCTGTGT-TTTTAATTGCATCAGTAGAACAT 1493
|||| ||||||||| |||||||||||||||||||| |||||||||||| | | |
Sbjct 1410 GATCATCAGTTTTTTTACCTTTGTTAGTTGCTGTGTGTTTTAATTGCAT--G-A-----T 1461
Query 1494 CATGTAAATAAAAACAAACTTTGTTGCTCCACCAA--ATTT-ATTTGACCCATGTAGATT 1550
|||||||||||||||| |||| | ||||| || |||| ||||||||||||||||||
Sbjct 1462 ---GTAAATAAAAACAAACGTTGTGGATCCAC-AACTATTTTATTTGACCCATGTAGATT 1517
Query 1551 TGAACACATGAATATGATTACTTCC 1575
||||||||| ||||||||||| |||
Sbjct 1518 TGAACACATCAATATGATTACGTCC 1542
> Ahg903036 jgi|Araly1|903036|Al_scaffold_0003_164
Length=1281
Score = 966 bits (523), Expect = 0.0
Identities = 934/1129 (83%), Gaps = 42/1129 (4%)
Strand=Plus/Plus
Query 297 TCGGATTT-TCCGGCAGCAATCGTTCGGTCGCGATATCGGCCACGCGGCAGCTGAAACGT 355
||| |||| | |||||||| |||||||||||||| || ||||| || || || || ||||
Sbjct 174 TCGAATTTGT-CGGCAGCAGTCGTTCGGTCGCGACATAGGCCATGCAGCTGCCGAGACGT 232
Query 356 ATCTAATTACT-GGACTTAGCTTCAAGCTTCTTCGATACCTCGGGGTAGGCTATCGATGG 414
|| |||||||| || ||||||||||| |||||| |||| ||||||||||| || || |||
Sbjct 233 ATTTAATTACTCGG-CTTAGCTTCAACCTTCTTGGATATCTCGGGGTAGGTTACCGGTGG 291
Query 415 ATGACAAAATTACTTGCCCTTACATGTTATGCTATGCTTCTTATGCCTGGCTTT-CTTCA 473
|| |||| |||||| || ||| | |||||||| ||||| ||||||||||| ||| |||||
Sbjct 292 ATCACAAGATTACTAGCTCTTGCTTGTTATGCAATGCTCCTTATGCCTGG-TTTCCTTCA 350
Query 474 AGTTGCATATAGTTATTTTTTCTCAAAGCAAGTCCGGAGGAGTATAGTGTATGGAGATCA 533
|||||||||| ||||||||||||| |||||| ||||||||||||| ||||||| |||
Sbjct 351 AGTTGCATATCTTTATTTTTTCTCATCTCAAGTCAGGAGGAGTATAGTTTATGGAGGTCA 410
Query 534 ACCAAGGAACAGGCTGGATCTGTACTTGCCAAG-CAAC-AACGATGGCTTGAAGCCGGTT 591
|||||||| ||||||||| ||||||| || | |||| || |||||| |||||||||||
Sbjct 411 TCCAAGGAATAGGCTGGATTTGTACTTACC--GCCAACTAATGATGGCCTGAAGCCGGTT 468
Query 592 GTGGTTTTTGTGACGGGTGGAGCTTGGATTATTGGGTACAAAGCTTGGGGCTCGCTCTTG 651
|| ||||| ||||| ||||||||||||||||| || |||||||||||||| || ||||||
Sbjct 469 GTTGTTTTCGTGACTGGTGGAGCTTGGATTATCGGTTACAAAGCTTGGGGTTCTCTCTTG 528
Query 652 GGAATGCAGCTAGCAGAAAGAGATATCATTGTAGCATGCCTTGACTACAGGAACTTTCCT 711
|| |||||||||||||||| || || ||||| ||||| || || ||||| |||||||||
Sbjct 529 GGGCTGCAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGAAACTTTCCT 588
Query 712 CAGGGAACAATTAGTGATATGGTGACTGATGCTTCTCAAGGAATCTCATTTGTCTGCAAT 771
||||| ||||||||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct 589 CAGGGCACAATTAGTGATATGGTAAGTGATGCCGCGCAAGGAATCTCATTTGTCTGCAAT 648
Query 772 AACATCTCTGCATTTGGAGGTGACCCCAACAGGATCTACCTGATGGGGCAATCAGCTGGT 831
||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 649 AACATCTCTGCATTTGGAGGTGATCCTAACAGAATCTATTTGATGGGGCAATCAGCTGGT 708
Query 832 GCCCATATAGCCGCTTGTGCTCTATTGGAACAAGCTACTAAAGAATTAAAA-GGAGAGAG 890
|| ||||| | |||||||||| || || ||||||| |||||||| || | || |||||
Sbjct 709 GCACATATCTCTTCTTGTGCTCTCTTTGAGCAAGCTATTAAAGAATCAAGACGG-GAGAG 767
Query 891 CATCTCCTGGACAGTGTCCCAGATAAAAGCTTATTTTGGATTATCTGGAGGGTACAATCT 950
|||||| |||| || || |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 768 CATCTCATGGAGTGTATCTCAGATAAAAGCTTACTTTGGTTTATCTGGAGGGTACAATCT 827
Query 951 ATACAAGT-TGGTTGATCACTTCCATAATCGGGGTCT-GTATCGCTCGATTTTCCTAAGC 1008
| ||| | ||||||| |||||||| || ||||| || |||||| || ||||||||||||
Sbjct 828 CTTCAA-TCTGGTTGAACACTTCCACAACCGGGG-CTTGTATCGTTCAATTTTCCTAAGC 885
Query 1009 ATAATGGAAGGAGAAGAGTCCTTTGAGA-AATTCTCTCCGGAAGTAAGACTGAAAGACCC 1067
|||||||||||||||||||||||||| | |||||||||| ||||| ||| |||||||||
Sbjct 886 ATAATGGAAGGAGAAGAGTCCTTTGA-ACAATTCTCTCCTGAAGTGAGATTGAAAGACCT 944
Query 1068 -AGTTGTTGGAAAAGCTGCTTCTCTTTTACCTCCTATTATACT-TTTCCACGGATCCTCA 1125
||| || |||||||||| | || |||||| ||||| ||| |||| | |||||| ||
Sbjct 945 GAGT-GTAAGAAAAGCTGCAGCCCTCTTACCTTATATTACACTCTTTC-ATGGATCCGCA 1002
Query 1126 GATTATTCCATACCATGC-GATGAAAGCAAAACTTTTACAGACGCTCTGCAAGCTGTTGG 1184
|||||||| || ||| | || | |||||||||||||||||| ||||| | ||||| ||
Sbjct 1003 GATTATTCAATTCCAC-CTGAAGCAAGCAAAACTTTTACAGATGCTCTTCGAGCTGCTGA 1061
Query 1185 AGCAAAAGCCGAGCTTGTTTTATACA-GCGG-AAAGACACATACTGA-CTTATTTCTTCA 1241
|| ||||| ||||| ||| | |||| | || ||| || ||||| || || |||||||||
Sbjct 1062 AGTGAAAGCTGAGCTAGTTATGTACAAG-GGTAAA-ACTCATACCGATCT-ATTTCTTCA 1118
Query 1242 GGATCC-CTTACGAGGAGGTAAAGACGAACTCTTTGATGACATAGTCTCTGTGATACATG 1300
|||||| || | |||| |||||||| || || |||||| | ||||||||| ||||||| |
Sbjct 1119 GGATCCTCTGA-GAGGCGGTAAAGATGAGCTATTTGATCATATAGTCTCTATGATACACG 1177
Query 1301 CGGAGGACAATGATGGGCTGACCAAA-GA--CTCGTTGGCTCCTCCCAGAAAGCGTCTTG 1357
| || |||| | | | ||| ||| || || |||| | || || ||||| || ||||
Sbjct 1178 CCGATGACAGTTACGCATTGAG-AAATGATGCT-GTTG-CGCCACCGAGAAAACGGCTTG 1234
Query 1358 TACCAGAGTTGTTACTGAAACTGGCTCGTG-A-GATTAGCCCTTTCTGA 1404
| |||||||| || ||||||||||| || | | | | |||||||| |||
Sbjct 1235 TTCCAGAGTTCTTGCTGAAACTGGC-CG-GCAAGGTCAGCCCTTTTTGA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5