BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15870.1
Length=2238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941077 jgi|Araly1|941077|scaffold_601621.1 3441 0.0
> Ahg941077 jgi|Araly1|941077|scaffold_601621.1
Length=2287
Score = 3441 bits (1863), Expect = 0.0
Identities = 2119/2244 (94%), Gaps = 12/2244 (1%)
Strand=Plus/Plus
Query 1 ATGTTGAAAAAAGTGAGGCGAAAAGTCAAAGTCTTAATCACCAAACCCTTTAAAAAGCCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 ATGTTGAAAAAAGTGAGGCGAAAAGTCAAAGTCTTAATCACCAAACCCTTTAAAAAGCCC 86
Query 61 AAGAACAGacc-tcca--tcaccaccaccacctcttcctcttcctccttcaccatctcca 117
||||||| ||| || | | ||| |||||||||||||||||||||||||||||||||||
Sbjct 87 AAGAACACACCTTCAAGGCCTCCATCACCACCTCTTCCTCTTCCTCCTTCACCATCTCCA 146
Query 118 ccaccGTCTCAACAAATGTCTTCCTCAAGACaaaaaaaCACTCCGTTTCTCTTCCCAAGA 177
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 147 CCACCGCCTCAAGAAATGTCTTCCTCAAGACAAAGAAACACTCCGTTTCTCTTCCCAAGA 206
Query 178 TCCGATTCCTCTGTTCTACCCGACCCGTCTCGTTTCTTCAGCCACGATCTCCTCTCATCT 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 207 TCCGATTCCTCTGTTTTACCCGACCCGTCTCGTTTCTTCAGCCACGATCTCCTCTCAACT 266
Query 238 CCTCTCCCTACAAACTCTTTCTTCCAAAACTTCACTCTCAACAATGGCGACCAAGCTGAG 297
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 267 CCTCTCCCCACAAACTCATTCTTCCAAAACTTCACTCTCAAAAATGGCGACCAAGCTGAG 326
Query 298 TACTTTCATCCTTACATCATCAAACCCTCGACTTCATCTCTCTCCATCTCCTACCCATCT 357
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 327 TACTTTCACCCTTACATCATCAAACCCTCGACTTCATCTCTCTCCATCTCATACCCATCT 386
Query 358 CTCTCCCACAACTCTGCTTTCATCTACGAAGCTTTCAACGCCGACATAACCATAACCGGG 417
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 387 CTCTCCCACAACTCTGCTTTCATCTACGAAGCTTTCAACGCCGACATCATCATAACCGGG 446
Query 418 TCAGATGGACCCGACCCGCATTCTCGTAAATCTCATCTCATCTCTTCCTTCAGCGATCTC 477
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 447 TCAGATGGACCCGACCCGCATTCTCGAAAAACTCATCTGATCTCTTCCTTCAGCGATCTC 506
Query 478 GGCGTCACTCTCGATTTCCCCTCCTCTAATCTCAGATTCTTCCTCGTTAGAGGAAGCCCT 537
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 507 GGCGTCACTCTCGATTTCCCTTCCTCTAATCTCAGATTCTTCCTCGTCAGAGGAAGCCCT 566
Query 538 TTCATCACCTTCTCCGTTAACTCCTCCATCACAATCTCAACGATCCACGCTGTTTTATCA 597
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 567 TTCATCACCTTCTCCGTTAACTCCTCCATCACAATCTCAACGATCCACGCCGTTTTATCA 626
Query 598 CTTTCCGGTAACACCTCTTCAACAAAGTACACCGTCAAACTCAACAACAACCAAACATGG 657
||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 627 CTTTCCGGTAACACCTCATCAACAAAGTACACCGCCAAGCTCAACAACAACCAAACATGG 686
Query 658 CTAATCTACGCCTCTTCTCCGATCAATCTAACCAAAGACGGCGTTTCTTCAATCAATTGC 717
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 687 CTAATCTACGCCTCTTCTCCGATCAATCTAACCAAAGACGGCGTTTCTTCCATCAATTGC 746
Query 718 GGTGATGGGTTTTCGGGTATTATCCGGATCGTCGTGTTACCAAATCCAAATCCGTATTTC 777
|||| ||||||||||||||||||||| ||||||| ||||||||||||| || | ||
Sbjct 747 GGTGCTGGGTTTTCGGGTATTATCCGAATCGTCGCGTTACCAAATCCAGAT---T-TT-- 800
Query 778 GAAACAATCCTCGACGGATTCAGTTGCTCTTACCCAGTTTCCGGTGACGCTGATTTCACA 837
||| || |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 801 GAATCAGTCCTCGACAGATTCAGTTGCTGTTACCCAGTTTCCGGTGACGCTGATTTCACA 860
Query 838 AAGCCGTTTGCTTTAGAGTATAAATGGGAGAAACGAGGCTATGGAGATCTTCTAATGCTA 897
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 861 AAGCCCTTTGCTTTAGAGTATAAATGGGACAAACGAGGCTATGGAGATCTTCTAATGCTA 920
Query 898 GCTCATCCTCTTCATCTCAAGCTTTTATCAACCAACGATTGTTCTATCACAGTTCTAGAC 957
||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 921 GCTCATCCTCTTCATCTCAAGCTTTTATCAAACAACGATTGTTCAATCGCAGTTCTAGAC 980
Query 958 AATTTCAAATACAACAGCATCGACGGTGATTTAGTAGGTGTCATCGGAGATTCATGGGTT 1017
||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 981 AATTTCAGATACAACAGCATCGACGGAGATTTAGTAGGTGTCGTCGGAGATTCATGGGTT 1040
Query 1018 TTAAAACCAGACCCTGTTTCTGTTACGTGGCACTCTATCAAAGGAGTTCAAGAAGATTCT 1077
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1041 TTGAAACCAGACCCTGTTTCGGTAACGTGGCACTCTATCAAAGGAGTTCAAGAAGATTCT 1100
Query 1078 CACCAAGAGATCATCTCTGCTCTAATCAAAGACGTTAACGCTTTAGATTCATCAGCTGAG 1137
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1101 CACCAAGAGATTATCTCAGCTCTAATCAAAGACGTAAACGCTTTAGATTCATCAGCTCCG 1160
Query 1138 GTCACCAACTCTTCGTATTTCTACGCGAAATTGATCGCGAGGGCGGCGAGGTTAGCTTTA 1197
||||| ||||||||||||| ||||||||||||||||| || || |||||||||||||||
Sbjct 1161 GTCACGGACTCTTCGTATTTTTACGCGAAATTGATCGCTAGAGCTGCGAGGTTAGCTTTA 1220
Query 1198 ATAGCTGAAGAAGTTTGTTATCTGGATGTTATTCCAAAGATTAGAACTTACTTGAAGAAC 1257
|| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 1221 ATCGCTGAAGAAGTTTGTTATCTCGATGTGATTCCAGCGATTAGAACTTACTTGAAGAAC 1280
Query 1258 ATGATCGAGCCGTGGCTTAATGGAAGTTTCGGACCAAATGGTTTCTTGTATGATCCAAAA 1317
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1281 ATGATCGAGCCGTGGCTTAATGGAAGTTTCGGACCAAATGGGTTCTTATATGATCCTAAA 1340
Query 1318 TGGGGAGGTGTGATTACTAAGCTAGGATCTAGAGATTCAGGAGCAGATTTTGGGTTTGGG 1377
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1341 TGGGGAGGTGTGATCACCAAGCTAGGATCGAGAGATTCAGGAGCAGATTTTGGGTTTGGG 1400
Query 1378 ATTTACAATGATCATCATTATCATTTAGGTTACTTTGTTTATGCGATTGCTGTGCTTGCA 1437
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1401 ATTTATAATGATCATCATTATCATTTAGGCTACTTTGTTTATGCGATTGCTGTGCTTGCA 1460
Query 1438 AAGATTGATCCTTTATGGGGGAAGAGATACAGACCTCAAGCGTATACTTTAATGGCGGAT 1497
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1461 AAGATTGATCCTTTATGGGGAAAGAGATACAAACCTCAAGCGTATACTTTAATGGCGGAT 1520
Query 1498 TACTTGACGTTGGGGAAGAAAGGAGCCAAGTCGAATTCGAATTACCCGCGTTTGAGATGC 1557
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1521 TACATGACGTTGGGGAAGAAAGGAGCTAAGTCGAATTCGAATTACCCGCGTTTGAGATGT 1580
Query 1558 TTTGATCTTTTCAAGCTTCATTCTTGGGCTGGAGGGTTAACGGAGTTCGCTGACGGGAGG 1617
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1581 TTTGATCTTTTCAAGCTTCATTCTTGGGCTGGAGGGTTAACGGAGTTCGCCGACGGGAGG 1640
Query 1618 AATCAAGAGAGTACAAGCGAGGCTGTCAATGCGTATTACTCCGCTGCTTTGTTGGGGCTA 1677
||||| |||||||| || |||||||| ||||||||||||||||| || ||||| ||| ||
Sbjct 1641 AATCAGGAGAGTACGAGTGAGGCTGTGAATGCGTATTACTCCGCCGCGTTGTTAGGGTTA 1700
Query 1678 GCTTATGGGGATACACATTTGGTGGCGGCTGCTTCGATGGTTCTGACGCTGGAGATTCAC 1737
||||| || ||||||||| |||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 1701 GCTTACGGTGATACACATCTGGTGGCGGCGGCTTCGACGGTTCTGACTCTGGAGATTCAC 1760
Query 1738 GCGGCGAAAATGTGGTGGCAGGTGAAAGAAGACGACGCTATTTACCCGCAAGATTTCACA 1797
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1761 GCCGCGAAAATGTGGTGGCAGGTGAAAGAAGACGACGCTATATACCCGCAAGACTTCACA 1820
Query 1798 TCGGAGAATCGTGTGGTTGGAGTGTTATGGTCAACAAAGAGAGACAGTGGCTTATGGTTC 1857
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1821 TCGGAGAATCGTGTGGTTGGAGTTTTATGGTCAACAAAGAGAGACAGTGGCTTATGGTTT 1880
Query 1858 GCGCCTAAAGAGTGGAAAGAATGTCGCCTTGGGATACAGTTATTACCGTTACTTCCGGTA 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GCGCCTAAAGAGTGGAAAGAATGTCGCCTTGGGATACAGTTATTACCGTTACTTCCGGTA 1940
Query 1918 TCAGAAGTTCTGTTCTCGGACGTGACATTCGTGAAACAGCTCGTGAATTGGACAATGCCT 1977
||||||||||| || || || || ||||||||||| |||||||||||||||||||||||
Sbjct 1941 TCAGAAGTTCTATTTTCCGATGTAACATTCGTGAAGCAGCTCGTGAATTGGACAATGCCG 2000
Query 1978 GCTTTGGCTAGAGACAGCGTCGGAGAAGGGTGGAAAGGATTTGTGTATGCTTTGGAAAGT 2037
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 GCGTTGGCGAGAGACAGCGTCGGAGAAGGGTGGAAAGGATTTGTGTATGCTTTGGAAAGT 2060
Query 2038 ATGTACGACAAAGATGGAGCAATGGAGAAGATTAAAGGATTAAATGGGTTTGATGATGGG 2097
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 ATTTACGACAAAGATGGAGCAATGGAGAAGATTAAAGGATTAAATGGGTTTGATGATGGG 2120
Query 2098 AACTCTTTAAGTAATCTGTTGTGGTGGGTTCATAGTAGAAACAatgatgatgatgatgat 2157
|||||| | |||||||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2121 AACTCTCTGAGTAATCTTTTGTGGTGGATTCACAGTAGAAACAATGATGATGATGATGAT 2180
Query 2158 --T-ATGAAGAAGACGATGAAGGTGGTTATGGTGGTCATGGCGGTGGCGGGAAGTATTGT 2214
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2181 GATTATGAAGAAGACGATGAAGGTGGTTATGGTGGTCATGGCGGTGGCGGGAAGTATTGC 2240
Query 2215 TCCTTTGGTCATTATTGTCATTAA 2238
|| ||||||||||||||| |||||
Sbjct 2241 TCGTTTGGTCATTATTGTAATTAA 2264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84255621940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5