BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15880.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488437 jgi|Araly1|488437|fgenesh2_kg.6__1571__AT5G15880.1 2122 0.0
Ahg941079 jgi|Araly1|941079|scaffold_601623.1 73.1 5e-12
> Ahg488437 jgi|Araly1|488437|fgenesh2_kg.6__1571__AT5G15880.1
Length=1293
Score = 2122 bits (1149), Expect = 0.0
Identities = 1255/1304 (96%), Gaps = 15/1304 (1%)
Strand=Plus/Plus
Query 2 AGAAGAGATATGGCCGGACTTCTAGCTTGGGCTGCCGATGTCGTCGGTAAAAATGGAAAA 61
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AGACGAGATATGGCCGGACTTCTAGCTTGGGCCGCCGATGTCGTCGGTAAAAATGGAAAA 60
Query 62 GAAGGAGACGATGAGAAGGATCGGATCCCATTGGTTTTCACGGAGGAGCAGCAGAAATAC 121
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 61 GAAGGAGACGATGAGAAGGATCGGATCCCATTGGTATTCACAGAGGATCAGCAGAAATAC 120
Query 122 GTCGATGAGCTTGGCCGAAAAGCGACAAACCTCAGCCGTTCGATCCAAGATCTGCGGCTC 181
||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 121 GTCGATGAGCTAGGCCGGAAAGCGACAACCCTCAGCCGTTCGATCCAAGATCTACGGCTC 180
Query 182 AGATTGCCTCCACCGGATATCTCCCAGCGTCTACCTGACCTTCATGCTCACTCCCTTGCG 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGATTGCCTCCACCGGATATCTCCCAGCGTCTACCTGACCTTCATGCTCACTCCCTTGCC 240
Query 242 TCCAATGCCGCTCTCACTCTTCAGCTTGATTCGCACTCCGCTACTCGTGAACAGGCACAC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCAATGCCGCTCTCACTCTTCAGCTTGATTCGCACTCCGCTACTCGTGAACAGGCACAC 300
Query 302 ATGAGAGAGCAGACACTGCTGGAAGAAAATAGTGCATATGAGAATGCAATATCAACCTGT 361
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 ATGAGAGAGCAGACACTTCTGGAAGAAAATAGTGCATATGAGAATGCAATATCAATCTGT 360
Query 362 GAGA-CAAAAATAGAAGAGAAGAGGAATGAAGCAGATTCTCTTCTTAGAAAGTTGAAGGA 420
|||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGAGC-AAAATTGAAGAGAAGAGGAATGAAGCAGATTCTCTTCTTAGAAAGTTGAAGGA 419
Query 421 GCTAGAAGCTGTAGAGGAAAACTTGAAAACTGAGCAGGATA-ATGCACAAGCTTCTCTAG 479
|||||||| ||| |||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 420 GCTAGAAGATGTGGAGGAAAACTTGAAAACTAAGCAGGA-AGATGCACAAGCTTCTCTAG 478
Query 480 ATGCAAGGCAGTCCAAAAGCTCTAGTGAAACTGTTATTCAGCCTGATGGGAATGGAAAAG 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGCAAGGCAGTCCAGAAGCTCTAGTGAAACTGTTATTCAGCCTGATGGGAATGGAAAAG 538
Query 540 ATGGAGCAGATACAGAGGCCATGAAGTCCT-TTATGCTAGAGAAGTTGGAGAGCAAAAAG 598
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 539 ATGGAGCAGATACAGAGGCCATGAAGT-CTGTTATGCTAGAGAAGTTGGAGAGCAAAAAG 597
Query 599 AACGATATGAGTTTAATGGAAGAAAAAGTTCAGGATTTAGAGAGGAGTTGGGCTGTTATA 658
|||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 598 AACGATTTGAGTTCAATGGAAGCAAAAGTTCAGGATTTAGAAAGGAGTTGGGCTGTTATA 657
Query 659 CAGGAAAGAGCACTGAAGCAGCCTTCTCCAGCTCAGAGAGAGAAGACACTGGATAAACAA 718
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGGAAAGAGCATTGAAGCAGCCTTCTCCAGCTCAGAGAGAGAAGACACTGGATAAACAA 717
Query 719 CTTCATAGCCTAATCGAGCAATTAGCTGCAAAGCAGGCACAAGCAGAGGGGATTGTTGGT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTTCATAGCCTAATCGAGCAATTAGCTGCAAAGCAGGCACAAGCAGAGGGGATTGTTGGT 777
Query 779 GAGATTCA-TCTAAATGAGATGGAGTTAGAGAGACTAAACAATTTATGGAGAAGATATGA 837
|||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 GAGATTCATTC-GAACGAGATGGAGTTAGAGAGACTAAACAATTTGTGGAGAAGATATGA 836
Query 838 AAGCTTTAACGTTGAAGGGAACGCTGCGAGGAACAGATTCAAGAGAACAAATTCAGATAG 897
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAGCTTTAACGTTGAGGGGAACGCTGCGAGGAACAGATTCAAGAGAACAAATTCAGATAG 896
Query 898 AGAATTTACATCAGACCACGAAGTTGATGGTCATTCCTACCTTCCATATTCATCTGCTAC 957
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 AGAATTTGCATCAGACCACGAAGTTGATGCTCATTCCTACCTTCCATATTCATCTGCTAC 956
Query 958 AAGAAATGGGACCCAAACAAGGCTTATGTATCTCAGGTCAGCTTTTGTCGTCTACATTTT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AAGAAATGGGACCCAAACAAGGCTTATGTATCTCAGGTCAGCTTTTGTCGTCTACATTTT 1016
Query 1018 GGCTTTGCAAGTCCTGGTTTTCATCAGAATTTCCTTTTGAGAAGTTGTGTACACGAGTAG 1077
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1017 GGCTTTGCAAGTCCTGGTTTTCATCAAAATTTCCTTTTGAGAAGTTGTGTACACGAGTAC 1076
Query 1078 TCTGTTCTGCTTTTAGTTTGCGCAAGGGAGTCAAAATACTGCATATAAAAATTTATAGGA 1137
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCTGTTGTGCTTTTAGTTTGCGCAAGGGAGTCAAAATACTGCATATAAAAATTTATAGGA 1136
Query 1138 ATACAATAATTGTTGTCAAATGGTTTTCTGTCCTTCCATATGGATATATGGCAATTGAAT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1137 ATACAATAATTGTTGTCAAATGGTTTTCTGTCCTTCCATATGGATATATGGCATTTGAAT 1196
Query 1198 ACTGAGACTCCTACATGAATCTTTCTTTACAATTTTTCTTGATATTAGATATATGTCTCC 1257
||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 1197 ACTGAGACTCCTATATGAATCTTTCTTTACAATTTTTCTTGATATT---T----GTCTCC 1249
Query 1258 ACTACTCATTCTTGAGGGATGCTTTCTAGTTATCTGTCTTCATC 1301
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1250 ACTACTCATTCTTGAGGGATGCTTTCTAGTTCTCTGTCTTCATC 1293
> Ahg941079 jgi|Araly1|941079|scaffold_601623.1
Length=723
Score = 73.1 bits (39), Expect = 5e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Minus
Query 1261 ACTCATTCTTGAGGGATGCTTTCTAGTTATCTGTCTTCATCA 1302
|||||||||||||||||||||||||||| |||||||||||||
Sbjct 723 ACTCATTCTTGAGGGATGCTTTCTAGTTCTCTGTCTTCATCA 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5