BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15890.1
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941079 jgi|Araly1|941079|scaffold_601623.1 520 2e-146
Ahg488437 jgi|Araly1|488437|fgenesh2_kg.6__1571__AT5G15880.1 158 2e-37
> Ahg941079 jgi|Araly1|941079|scaffold_601623.1
Length=723
Score = 520 bits (281), Expect = 2e-146
Identities = 363/401 (91%), Gaps = 12/401 (3%)
Strand=Plus/Plus
Query 1207 GGTCTGGCATTTTTAAGGAGTTTTTCTCCTCAACATTTCGAAGGTGGGGCTTGGAACGAA 1266
||||||||||||| ||||||||||||||| | | |||||| |||||||||||
Sbjct 331 GGTCTGGCATTTTCGCGGAGTTTTTCTCCTC-A-A-----AAGGTGACCCTTGGAACGAA 383
Query 1267 GGAGGGGACTGTGTACGGACACAACCTTACAGAAGAAACGAGACTATACCCG-A-G-GCA 1323
|||||||||| |||| ||||||||||||||||| ||||||| || || ||| | | ||
Sbjct 384 GGAGGGGACTCTGTAGGGACACAACCTTACAGACGAAACGAAACAATTTCCGAAGGTGCG 443
Query 1324 GATCTCAAGGTTCACGACATTCAAAGGGAGGAATTTAGAGCTGCAGAAGAAGATGGGATG 1383
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| |
Sbjct 444 GATCTCAAGGTTCACGACATTCAACTGAAGGAATTTAGAGCTTCAGAAGAAGATGGGAGG 503
Query 1384 AAGAAGAGTGGTTTGAGACTGAAGTTAATGGACACGACACAGGCAATGCTATTGCGACCA 1443
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 504 GAGAAGAGTGGTTTGAGACTGAAGTTAATGGACACCACACAGGCAATGCTATTGCTACCA 563
Query 1444 GATGGGCATCCTGGGAGATATGGACATCTACAGAATCCAAATGTGACTTTAAGAAATGAC 1503
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 564 GATGGGCATCCTGGGAGATATGGCCATCTACAGAATGCAAATGTGACTTTAAGAAATGAC 623
Query 1504 TGTATTCATTGGTGCCTGCCTGGACCTATCGATACTCTG-AATGATATATTGCTACAAAT 1562
||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 624 TGTATTCATTGGTTCCTGCCTGGACCTATCGATACT-TGGAATGATATATTGCTACAAAT 682
Query 1563 GATGAAGACAGATAACTAGAAAGCATCCCTCAAGAATGAGT 1603
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 683 GATGAAGACAGAGAACTAGAAAGCATCCCTCAAGAATGAGT 723
Score = 200 bits (108), Expect = 3e-50
Identities = 140/155 (90%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 1 ATGGAGCTTCCTTTGTTTGCAATCCTTCAAAGAACACCAAGAGTTGCAATTACATTAGCA 60
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 21 ATGGAGCTTCCTTTGTTTGCAATCCTTCAAAGAACACCAAAAGTTGCAGTTACATTAGCA 80
Query 61 TTTGTTCTATTTGTCCTCACAATAGT-TCCTGCTTTATATA--CTCTCCTTGCCGATCCA 117
|||||||||||| || |||||||||| | |||||| |||| ||||||| ||| |||||
Sbjct 81 TTTGTTCTATTTCTCTTCACAATAGTCTA-TGCTTTTTATATTCTCTCCTGGCCAATCCA 139
Query 118 ATCTTACCTCCATCAATCTCATCTTTCGAGACTGA 152
||||||||||||||||||||||| | |||| ||||
Sbjct 140 ATCTTACCTCCATCAATCTCATCATCCGAGGCTGA 174
> Ahg488437 jgi|Araly1|488437|fgenesh2_kg.6__1571__AT5G15880.1
Length=1293
Score = 158 bits (85), Expect = 2e-37
Identities = 109/119 (92%), Gaps = 7/119 (6%)
Strand=Plus/Minus
Query 1563 GATGAAGACAGATAACTAGAAAGCATCCCTCAAGAATGAGTAGTGGAGACATATATCTAA 1622
|||||||||||| |||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1293 GATGAAGACAGAGAACTAGAAAGCATCCCTCAAGAATGAGTAGTGGAGACA-A-AT--A- 1239
Query 1623 TATCAAGAAAAATTGTAAAGAAAGATTCATGTAGGAGTCTCAGTATTCAATTGCCATAT 1681
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1238 T--CAAGAAAAATTGTAAAGAAAGATTCATATAGGAGTCTCAGTATTCAAATGCCATAT 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63039355475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5