BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15900.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488438 jgi|Araly1|488438|fgenesh2_kg.6__1572__AT5G15900.1 2006 0.0
> Ahg488438 jgi|Araly1|488438|fgenesh2_kg.6__1572__AT5G15900.1
Length=1302
Score = 2006 bits (1086), Expect = 0.0
Identities = 1232/1304 (94%), Gaps = 4/1304 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCTTGTTCATTCTGCAACATTTCCATGTAAACAAAAGCTACTCATCGCAGTGACC 60
||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 1 ATGGAGCTTCTTCATTCTGCAACATTTCCAAGTAAACAAAAGCTACTCATCGTAGTGA-C 59
Query 61 A-TTGCTACATCTCTTTTAACCATCATCCCTCTTCTCTACCCTTTGCTTGAAGACCCTAA 119
| |||| | | |||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 AGTTGCCATAACTCTCTTCACCATCATCCCTCTTCTCTACCCTTTTCTTGAAGACCCTAA 119
Query 120 CTTCTTCCTCAAGCAACAACCTCCAAGCCAAAGCAGCATCATCAACCTCGAAAACGGTGT 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 120 CTTCTTCCTCAAGCAACAACCTCCAAGCCAAAGCAGCATCATCAAGCTCGAAAACGGCGT 179
Query 180 TGTAACATCACATGACAGCTGCGACATATTCTCGGGAGAGTGGGTTCCTAACCCTGAGGC 239
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TGTAACATCACATGAGAGCTGCGACATATTCTCGGGAGAATGGGTTCCTAACCCTGAGGC 239
Query 240 ACCTTACTACACCAACACGACGTGCTGGGCGATACACGAACACCAAAATTGCATGAAGTT 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 ACCTTACTACACCAACACGACGTGCTGGGCGATACACGAACACCAAAACTGCATGAAGTT 299
Query 300 TGGAAGACCCGACACGGATTTCATCAAATGGAAATGGAAACCTTACGGGTGCGAAGACGG 359
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 300 TGGAAGACCCGACACGGATTTCATCAAGTGGAAATGGAAACCTTATGGGTGCGAAGATGG 359
Query 360 CTTGCCGGTATTTGACCCGGTTAGGTTTCTTGAGATCGTGAGAGGTAAAACCATGGCGTT 419
|||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTGCCAGTTTTTGACCCGTTTAGGTTTCTTGAGATCGTGAGAGGTAAAACCATGGCGTT 419
Query 420 TGTTGGTGACTCAGTTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTTTCTCAGGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 TGTTGGTGACTCAGTTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTCTCTCAGGT 479
Query 480 TGAATATCCGATGGATGCTTCGGTTAAGAATGACGATTATTTCAAACGATGGACATACGA 539
||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 480 TGAGTATCCGATGGATGCTTCCGTTAAGGATGACGATTATTTCAAACGATGGACATACGA 539
Query 540 AACATACAATTTCACGATCGCCGCATTTTGGACACCACACTTGGTTAAGTCCAAAGAACC 599
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 AACATACAACTTCACGATCGCCGCATTTTGGACACCACACTTGGTAAAGTCCAAAGAACC 599
Query 600 CGACCAGACCCAGCCCAAGCATATTGATATTTTTGACCTATACCTTGATGAGGCAGACGA 659
||||||||||||| || |||||| ||||||||| ||||||||||| || |||||||||||
Sbjct 600 CGACCAGACCCAGACCGAGCATACTGATATTTTCGACCTATACCTCGACGAGGCAGACGA 659
Query 660 GAGTTGGACAGCCGATATAGGAGATTTTGACTTCGTAATCATCTCTTCTGGCCACTGGCA 719
|||||||||||||||||||||||||||||||| ||| || ||||| ||||| ||||||||
Sbjct 660 GAGTTGGACAGCCGATATAGGAGATTTTGACTACGTGATTATCTCATCTGGTCACTGGCA 719
Query 720 TTACCGGCCATCAGTCTACTACGAAAACCGGACTATCACCGGTTGCCATTATTGCCAATT 779
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 TTACCGGCCATCAGTCTACTACGAAAACCGGACAATCACCGGTTGCCATTATTGCCAATT 779
Query 780 ACCGAACATAACCGATCTCACAATGTTTTATGGGTATAGAAAAGCTTTTAGAACCGCGTT 839
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 780 ACCGAACATAACCGATCTCACAATGTTTTACGGGTATAGAAAAGCGTTTAGAACCGCGTT 839
Query 840 TAAAGCGATCTTGGATTCGGAAAGCTTCAAAGGCGTAATGTACTTACGAAGTTTTGCACC 899
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 TAAAGCGATCTTGGACTCGGAAAGCTTCAAAGGGGTAATGTACTTACGAAGTTTTGCACC 899
Query 900 GTCACATTTTGAAGGCGGGTTGTGGAATGAAGGAGGAGATTGTTTGAGGAAACAACCTTA 959
||| |||||||| |||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 900 GTCGCATTTTGAGGGCGGGTTATGGAACGAAGGAGGAAATTGTTTGAGGAAACAACCTTA 959
Query 960 TAGGAGCAATGAGACTCAAGACGAAACGACAATGAAGCTACACAAGATTCAGTTGGAAGA 1019
|| ||| || |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 TAAGAGTAACGAGAGTCAAGACGAAACGACAATGAAGCTACACATGATTCAGTTGGAAGA 1019
Query 1020 ATTTTGGAGAGCTGAAGAAGAAGCGAAGAAGAAAGGGAAAAGGTTACGATTACTAGATAC 1079
||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 1020 ATTTTGGAGAGCTGAAGAAGAAGCGAAGAAGAAAGGGAAGAGGTTAAGACTACTAGATAC 1079
Query 1080 GACCCAAGCTATGTGGCTTAGACCCGACGGTCACCCAAGCCGCTACGGCCATATTCCAGA 1139
||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1080 GACCCAAGCAATGTGGCTTAGACCCGATGGTCACCCAAGCCGCTATGGCCATATGCCAGA 1139
Query 1140 GGCCAATGTCACGTTGTACAACGACTGTGTCCACTGGTGCTTGCCCGGTCCTATCGACAA 1199
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 GGCCAATGTCATGTTGTACAACGACTGTGTTCACTGGTGCTTGCCCGGTCCTATCGACAA 1199
Query 1200 CCTCAATGACTTCTTGCTGGCTATGCTAAAGAGAGAAGAAGACAAAGGATT-CTTGGCGC 1258
|||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||| |
Sbjct 1200 CCTCAATGACTTCTTGCTCGCTATGCTAAAGAGAGAACAAGACAAAGGATTACT-GGCTC 1258
Query 1259 AAGTTCGAAAAATGTTGTCCTAATGACCAAGCTAAATCAAGTTT 1302
||||||| |||||| ||||||||||||| ||| |||||||||||
Sbjct 1259 AAGTTCGGAAAATGCTGTCCTAATGACCTAGCCAAATCAAGTTT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5