BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15900.1 Length=1314 Score E Sequences producing significant alignments: (Bits) Value Ahg488438 jgi|Araly1|488438|fgenesh2_kg.6__1572__AT5G15900.1 2006 0.0 > Ahg488438 jgi|Araly1|488438|fgenesh2_kg.6__1572__AT5G15900.1 Length=1302 Score = 2006 bits (1086), Expect = 0.0 Identities = 1232/1304 (94%), Gaps = 4/1304 (0%) Strand=Plus/Plus Query 1 ATGGAGCTTGTTCATTCTGCAACATTTCCATGTAAACAAAAGCTACTCATCGCAGTGACC 60 ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| | Sbjct 1 ATGGAGCTTCTTCATTCTGCAACATTTCCAAGTAAACAAAAGCTACTCATCGTAGTGA-C 59 Query 61 A-TTGCTACATCTCTTTTAACCATCATCCCTCTTCTCTACCCTTTGCTTGAAGACCCTAA 119 | |||| | | |||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct 60 AGTTGCCATAACTCTCTTCACCATCATCCCTCTTCTCTACCCTTTTCTTGAAGACCCTAA 119 Query 120 CTTCTTCCTCAAGCAACAACCTCCAAGCCAAAGCAGCATCATCAACCTCGAAAACGGTGT 179 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 120 CTTCTTCCTCAAGCAACAACCTCCAAGCCAAAGCAGCATCATCAAGCTCGAAAACGGCGT 179 Query 180 TGTAACATCACATGACAGCTGCGACATATTCTCGGGAGAGTGGGTTCCTAACCCTGAGGC 239 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 180 TGTAACATCACATGAGAGCTGCGACATATTCTCGGGAGAATGGGTTCCTAACCCTGAGGC 239 Query 240 ACCTTACTACACCAACACGACGTGCTGGGCGATACACGAACACCAAAATTGCATGAAGTT 299 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 ACCTTACTACACCAACACGACGTGCTGGGCGATACACGAACACCAAAACTGCATGAAGTT 299 Query 300 TGGAAGACCCGACACGGATTTCATCAAATGGAAATGGAAACCTTACGGGTGCGAAGACGG 359 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || Sbjct 300 TGGAAGACCCGACACGGATTTCATCAAGTGGAAATGGAAACCTTATGGGTGCGAAGATGG 359 Query 360 CTTGCCGGTATTTGACCCGGTTAGGTTTCTTGAGATCGTGAGAGGTAAAACCATGGCGTT 419 |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTTGCCAGTTTTTGACCCGTTTAGGTTTCTTGAGATCGTGAGAGGTAAAACCATGGCGTT 419 Query 420 TGTTGGTGACTCAGTTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTTTCTCAGGT 479 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 420 TGTTGGTGACTCAGTTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTCTCTCAGGT 479 Query 480 TGAATATCCGATGGATGCTTCGGTTAAGAATGACGATTATTTCAAACGATGGACATACGA 539 ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 480 TGAGTATCCGATGGATGCTTCCGTTAAGGATGACGATTATTTCAAACGATGGACATACGA 539 Query 540 AACATACAATTTCACGATCGCCGCATTTTGGACACCACACTTGGTTAAGTCCAAAGAACC 599 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 AACATACAACTTCACGATCGCCGCATTTTGGACACCACACTTGGTAAAGTCCAAAGAACC 599 Query 600 CGACCAGACCCAGCCCAAGCATATTGATATTTTTGACCTATACCTTGATGAGGCAGACGA 659 ||||||||||||| || |||||| ||||||||| ||||||||||| || ||||||||||| Sbjct 600 CGACCAGACCCAGACCGAGCATACTGATATTTTCGACCTATACCTCGACGAGGCAGACGA 659 Query 660 GAGTTGGACAGCCGATATAGGAGATTTTGACTTCGTAATCATCTCTTCTGGCCACTGGCA 719 |||||||||||||||||||||||||||||||| ||| || ||||| ||||| |||||||| Sbjct 660 GAGTTGGACAGCCGATATAGGAGATTTTGACTACGTGATTATCTCATCTGGTCACTGGCA 719 Query 720 TTACCGGCCATCAGTCTACTACGAAAACCGGACTATCACCGGTTGCCATTATTGCCAATT 779 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 720 TTACCGGCCATCAGTCTACTACGAAAACCGGACAATCACCGGTTGCCATTATTGCCAATT 779 Query 780 ACCGAACATAACCGATCTCACAATGTTTTATGGGTATAGAAAAGCTTTTAGAACCGCGTT 839 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 780 ACCGAACATAACCGATCTCACAATGTTTTACGGGTATAGAAAAGCGTTTAGAACCGCGTT 839 Query 840 TAAAGCGATCTTGGATTCGGAAAGCTTCAAAGGCGTAATGTACTTACGAAGTTTTGCACC 899 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 840 TAAAGCGATCTTGGACTCGGAAAGCTTCAAAGGGGTAATGTACTTACGAAGTTTTGCACC 899 Query 900 GTCACATTTTGAAGGCGGGTTGTGGAATGAAGGAGGAGATTGTTTGAGGAAACAACCTTA 959 ||| |||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||| Sbjct 900 GTCGCATTTTGAGGGCGGGTTATGGAACGAAGGAGGAAATTGTTTGAGGAAACAACCTTA 959 Query 960 TAGGAGCAATGAGACTCAAGACGAAACGACAATGAAGCTACACAAGATTCAGTTGGAAGA 1019 || ||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 960 TAAGAGTAACGAGAGTCAAGACGAAACGACAATGAAGCTACACATGATTCAGTTGGAAGA 1019 Query 1020 ATTTTGGAGAGCTGAAGAAGAAGCGAAGAAGAAAGGGAAAAGGTTACGATTACTAGATAC 1079 ||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| Sbjct 1020 ATTTTGGAGAGCTGAAGAAGAAGCGAAGAAGAAAGGGAAGAGGTTAAGACTACTAGATAC 1079 Query 1080 GACCCAAGCTATGTGGCTTAGACCCGACGGTCACCCAAGCCGCTACGGCCATATTCCAGA 1139 ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 1080 GACCCAAGCAATGTGGCTTAGACCCGATGGTCACCCAAGCCGCTATGGCCATATGCCAGA 1139 Query 1140 GGCCAATGTCACGTTGTACAACGACTGTGTCCACTGGTGCTTGCCCGGTCCTATCGACAA 1199 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1140 GGCCAATGTCATGTTGTACAACGACTGTGTTCACTGGTGCTTGCCCGGTCCTATCGACAA 1199 Query 1200 CCTCAATGACTTCTTGCTGGCTATGCTAAAGAGAGAAGAAGACAAAGGATT-CTTGGCGC 1258 |||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||| | Sbjct 1200 CCTCAATGACTTCTTGCTCGCTATGCTAAAGAGAGAACAAGACAAAGGATTACT-GGCTC 1258 Query 1259 AAGTTCGAAAAATGTTGTCCTAATGACCAAGCTAAATCAAGTTT 1302 ||||||| |||||| ||||||||||||| ||| ||||||||||| Sbjct 1259 AAGTTCGGAAAATGCTGTCCTAATGACCTAGCCAAATCAAGTTT 1302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49140440013 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5