BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15910.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488439 jgi|Araly1|488439|fgenesh2_kg.6__1573__AT5G15910.1 1509 0.0
> Ahg488439 jgi|Araly1|488439|fgenesh2_kg.6__1573__AT5G15910.1
Length=992
Score = 1509 bits (817), Expect = 0.0
Identities = 946/1005 (94%), Gaps = 22/1005 (2%)
Strand=Plus/Plus
Query 64 CGATACTTGAGCTACTCAGCTTTAGGG-TTT-A----AC-ATGTTAAGGTCTCTGATTTG 116
||||||||||||||||||||||||||| ||| | || ||||| ||||||||||||||
Sbjct 1 CGATACTTGAGCTACTCAGCTTTAGGGTTTTAAGTGTACGATGTTTAGGTCTCTGATTTG 60
Query 117 GAAACGATCACAGGCATATTCTTCAGTCGTCACGATGTCTTCAATCAGTCAGAGAGGAAA 176
|||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 61 GAAACGATCACAAGCATCTTCTTCAACCGTCACGATGTCTTCAATCAGTCAGAGAGGTAA 120
Query 177 TGAAAGGCTTTTGTCTGAAGTCGCTGGTTCACATTCAAGAGATAATAAGATATTGGTTTT 236
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TGAAAGGCTTTTGTCTGAAGCCGCTGGTTCACATTCAAGAGATAATAAGATACTGGTTTT 180
Query 237 GGGAGGAAATGGTTATGTAGGTTCACACATATGTAAGGAGGCACTGAGACAAGGTTTCTC 296
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GGGAGGAAATGGTTATGTAGGTTCACACATATGCAAGGAGGCACTGAGACAAGGTTTCTC 240
Query 297 TGTATCTAGTCTTAGCAGGTCTGGAAGATCTTCTCTTCACGATTCGTGGGTCGATGATGT 356
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 241 TGTATCTAGTCTTAGCAGGTCTGGAAGATCTTCTCTGCATGATTCGTGGGTGGATGATGT 300
Query 357 AACCTGGCATCAAGGTGATTTGCTTTCACCCGATTCTCTGAAGCCTGCACTAGAAGGAAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 AACCTGGCATCAAGGTGATTTGCTTTCACCCGATTCTCTGAAGCCTGCACTCGAAGGAAT 360
Query 417 TACATCTGTGATTTCATGTGTTGGTGGTTTTGGTTCCAACTCACAAATGGTCAGAATTAA 476
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACATCTGTGATCTCATGCGTTGGTGGTTTTGGTTCCAACTCACAAATGGTCAGAATTAA 420
Query 477 CGGTACTGCAAACATCAATGCTGTTAAAGCTGCAGCAGAACAAGGTGTGAAGAGATTTGT 536
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 421 CGGTACTGCAAACATCAATGCTGTTAATGCTGCAGCAGAACAAGGTGTGAAAAGATTTGT 480
Query 537 GTATATATCAGCTGCGGATTTTGGTGTCATAAATAACTTGATTCGAGGATATTTCGAAGG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTATATATCAGCTGCGGATTTTGGTGTCATAAATAACTTGATTCGAGGATATTTCGAAGG 540
Query 597 GAAGAGAGCAACCGAAGCTGAGATTTTGGATAAATTTGGAAACAGAGGTTCGGTTTTAAG 656
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 541 GAAGAGAGCAACTGAAGCTGAGATTTTGGATAAATTCGGAAACAGAGGAACGGTTTTAAG 600
Query 657 GCCAGGATTCATACATGGGACTCGTCAGGTCGGTAGCATAAAGCTGCCACTTAGTCTCAT 716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCAGGATTCATACACGGGACTCGTCAGGTCGGTAGCATAAAGCTGCCACTTAGTCTCAT 660
Query 717 TGGAGCTCCTCTCGAAATGGTTTTGAAGCTGTTGCCAAAAGAGGTGACGAAAATTCCTGT 776
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 661 TGGAGCTCCTCTCGAAATGGTCTTGAAGCTGTTCCCGAAAGAGGTGACGAAAATTCCTGT 720
Query 777 GATCGGGCCACTTTTAATACCTCCGGTCAATGTCAAATCCGTTGCAGCAACAGCGGTAAA 836
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 721 GATCGGGCCACTTTTAATACCTCCGGTCAATGTTAAATCCGTTGCAGGAACAGCGGTAAA 780
Query 837 AGCTGCAGTTGATCCCGAGTTTGCTTCTGGAGTCATCGATGTGTACCGGATTCTTCAACA 896
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 AGCTGCAGTTGATCCCGAGTTTGCGTCTGGAGTCATCGATGTGTACCGGATTCTTCAACA 840
Query 897 TGGTCACTGAAAA-CAACACCTGTCTTAACAAAGTT-CTCCTCAATACGGTTTTAAATGT 954
|||||||||||| ||||||| |||||||||||||| ||||| | ||| ||||||| |||
Sbjct 841 CGGTCACTGAAAAACAACACC-GTCTTAACAAAGTTTCTCCTTATTACTGTTTTAACTGT 899
Query 955 CAAATTCAAATGTAACCAATAACCATCGTCTCTGGTCTTCTGCTACCAAATAAACTATGA 1014
|||||||||||||||| | | ||||||||| | |||||||||| ||||||||||
Sbjct 900 TGAATTCAAATGTAACCA-T--C----GTCTCTGGT-T-CTGCTACCAA-TAAACTATGA 949
Query 1015 CTTTCGCATATTACACAATAGGAGAACAAATAATGAAATCTTTTT 1059
||||||||||||||| | |||||||| |||||||||||| |||||
Sbjct 950 CTTTCGCATATTACA-A-TAGGAGAAAAAATAATGAAATTTTTTT 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5