BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15930.1
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488442 jgi|Araly1|488442|fgenesh2_kg.6__1576__AT5G15930.1 2049 0.0
Ahg477479 jgi|Araly1|477479|fgenesh2_kg.3__180__AT3G02460.1 1029 0.0
> Ahg488442 jgi|Araly1|488442|fgenesh2_kg.6__1576__AT5G15930.1
Length=1463
Score = 2049 bits (1109), Expect = 0.0
Identities = 1401/1529 (92%), Gaps = 72/1529 (5%)
Strand=Plus/Plus
Query 4 TATATATATATCTGGAACGTGATAATACGCGTATGAATGATCGATGTGATCTCCAAGTCC 63
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
Sbjct 1 TATATATATATCTGGAACGTGATGGTACGCGTCTGAATGATCGATGTGATCTCCAAGTTC 60
Query 64 AACGTCTCCTTTCTATTTACCGTGTTCCTTCCTTTGAAGTCATTCTTCAATTCATCGCTC 123
||||||||||||||| | | |||||| | | | | ||| | | | ||||
Sbjct 61 AACGTCTCCTTTCTA--T----T-TTCCTT-C--T--A---A---TTC-A-T-A--GCTC 97
Query 124 CATTGTTCTTCAGATTTCAATTTTGCTGGGAAATTTTAGAGTAGGCGACTCCTTTGATCG 183
|||||||||||||||||||||||||||||| | | | | | ||||||||
Sbjct 98 CATTGTTCTTCAGATTTCAATTTTGCTGGG--A----A-A-T-------T--TTTGATCG 140
Query 184 CCTTATTTCATTTCGAAAGTTGAGATTTTGGATACGACCCTCTTGATCTGACACCGGAAT 243
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 141 CCTTATTTCATTTCGAAAGTTAAGATTTTGGATACGACCCTCTTGATCTGACACCGGAAT 200
Query 244 GTTGGTTAGTTAAATGGAGAGAAAAAGAACAAAGGACAGTGAACCAGGACCAGTCCCTCT 303
||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 201 GTTGGTTAGTTAAATGGAGAGGAAACGAACAAAGGACAGTGAACCAAGACCAGTCCCTCT 260
Query 304 GCTTGTACCGGTTGATAGATTTGGGTTTCTGAAACAGGAACATGGCAGTTCTCCTCAACG 363
|||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct 261 ACTTGTACCGGTTGATAGATTCGGGTTTCTGAAGCAGGAACATGGCAATTCTCCTCAACG 320
Query 364 TTTCACCAAGACTAAATCATCTATTAATTATGAGAAGGAGGAGAAG-AGAGTGACAAAAT 422
||||||||||||||||||||||| ||| ||||| ||||||||| || ||||| |||||||
Sbjct 321 TTTCACCAAGACTAAATCATCTAGTAACTATGACAAGGAGGAG-AGAAGAGTAACAAAAT 379
Query 423 GGAGGAAGATGATTGGAACTGGGGGTAGTGATTGGAAGCATTACGTTAGGAGAAAACCTC 482
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 380 GGAGGAAGATGATTGGAACTGGTGGTAGTGATTGGAAGCATTACGTTAGAAGAAAACCTC 439
Query 483 ATGTTGTCAAGAGGCGGATTCGAAAAGGGATCCCTGATTGCTTAAGGGGTCTCGTTTGGC 542
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 440 ATGTTGTCAAGAGGCGGATTCGAAAAGGGATCCCTGACTGCTTAAGGGGTCTCGTTTGGC 499
Query 543 AATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGGTGTTTATGTGCAACTGG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGGTGTTTATGTGCAACTGG 559
Query 603 TGATTTATGAGACGTCGGCATCAGAACTCGATATCATTCGGGATATATCTCGTACTTTCC 662
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGATTTATGAGACGTCAGCATCAGAACTCGATATCATTCGGGATATATCTCGTACTTTCC 619
Query 663 CGTCACATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAGATCATTATACAATGTTC 722
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CATCGCATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAGATCATTATACAATGTTC 679
Query 723 TAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCAGGGAATGGGTTTCATAG 782
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 680 TAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCAGGGGATGGGTTTCATAG 739
Query 783 CCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCTGGTTATTAGTTGCATTAC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCTGGTTATTAGTTGCATTAC 799
Query 843 TCAAAGGAGCTGTCCACTCCCCAATAGAAGGATTGTATCAGGCAGGGCTTCCTCTTGTAC 902
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TCAAAGGAGCTGTTCACTCCCCAATAGAAGGATTGTATCAGGCAGGGCTTCCTCTTGTAC 859
Query 903 AGCAATATCTGTTACAGTTTGATCA-GTTGGTAAGAGAGCTAATGCCCAAACTAGGAGAA 961
|||| |||||||||||||| ||| | | |||||||||| |||||||| ||||||||||||
Sbjct 860 AGCAGTATCTGTTACAGTTCGAT-ATGCTGGTAAGAGAACTAATGCCGAAACTAGGAGAA 918
Query 962 CATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAGTCAATGGTTCATAACCGTC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAGTCAATGGTTCATAACCGTC 978
Query 1022 TTTTCGTATTCACTTCCTTTCCATTCAGCGCTACGAATTTGGGATGTGTTTCTAGCTGAG 1081
|||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 979 TTTTCGTATTCATTTCCTTTCCATTCGGCACTACGAATCTGGGATGTGTTTCTAGCTGAG 1038
Query 1082 GGTGTTAAAATCGTGTTCAAAGTCGGTTTAGCATTATTGAAGCATTGCCATGATGATTTG 1141
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1039 GGTGTTAAGATCGTGTTCAAAGTTGGTTTAGCGTTATTGAAGCATTGCCATGATGATTTG 1098
Query 1142 TTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGAATTTCCCTGAAGATGCCATG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGAATTTCCCTGAAGATGCCATG 1158
Query 1202 GATCCTGATACTTTGCTTCCATTGGCTTATTCCATTAAGGTATCAAAGCGTTTGGAAGAA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 GATCCTGATACTTTGCTTCCATTGGCTTATTCCATTAAGGTATCAAAGCGTTTGGAAGAA 1218
Query 1262 ATGAAACAGGATTGTGACAAGGCCGT-TGCTAAACCGACTCAAACGGCCAAATCGGTTCG 1320
|||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||
Sbjct 1219 ATGAAACAGGATTGTGACAAGGCCGTAT-CTAAACCGGCTCAAACGGCCAAACCGGTTTA 1277
Query 1321 ACAATAGAGTTTGATATTCTTGAACCGAATCAAACCGGAAAGTGGATTCTCGAAGATTCT 1380
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1278 ACAATAGAGTTTGATATTCTTGAACCGAATCAAACCGGAAACCGAATTCTCGAAGATTCT 1337
Query 1381 TCTCATTATTT--GTGCAAATTTTAT-CTTTCTCTCtttttttACAACTCGTGTGAAAAC 1437
||||||| ||| ||||||||||||| | ||| | | | || || |||||
Sbjct 1338 TCTCATTCTTTTTGTGCAAATTTTATACAA-CTCG-TGTGA--A-AA---GTA--AAAAC 1387
Query 1438 AATAGAAGAATTACTTTTGTAAAAATATATTTCGACTCAACAACTTTAGATTCTTCTTTC 1497
||||||| ||||| | |||||||||||||||||||| |||||||||| |||||
Sbjct 1388 AATAGAA------CTTTT-TCAAAATATATTTCGACTCAACT--TTTAGATTCTCCTTTC 1438
Query 1498 TTTTTGGTAATGAAAAGTCAAATTTGAGC 1526
|||| || || || |||||||||||||
Sbjct 1439 TTTTGGGCAA--AA--GTCAAATTTGAGC 1463
> Ahg477479 jgi|Araly1|477479|fgenesh2_kg.3__180__AT3G02460.1
Length=1724
Score = 1029 bits (557), Expect = 0.0
Identities = 900/1062 (85%), Gaps = 38/1062 (4%)
Strand=Plus/Plus
Query 247 GGTTAGT-TA-AATGGAG-AGAAAAAGAA-C--AAA-GGACAGTGAACCAGGACCAGTC- 298
||||||| | ||| ||| |||||||||| | ||| || ||||||| ||| |||||||
Sbjct 477 GGTTAGTAGAGAAT-GAGTAGAAAAAGAACCGAAAATGG-CAGTGAATCAGCACCAGTCA 534
Query 299 CCTCTGCTTGTACCGGTTGATAGATTTGGGTTTCTGAAACAGGAACATGGCAGTTC-T-- 355
| ||| | ||| || || |||||||| |||||||| || || |||||||||| ||| |
Sbjct 535 CTTCT-CATGTTCCCGTGGATAGATTCGGGTTTCTCAAGCAAGAACATGGCAATTCTTCG 593
Query 356 CCTCAACGTTTCACCAAGACTA-AA-T-CATCTAT-TAATTATGA-GA-AG-GAGGAGAA 408
||| | ||||| | |||| ||| || | |||| || | | | | || || |||||| |
Sbjct 594 CCTGAGCGTTTTAGCAAGTCTAGAACTACATC-ATCCACTGACCATGACAGAGAGGAG-A 651
Query 409 GAGA-GTGACAAAATGGAGGAAGATGATTGGAACTGGGGGTAGTGATTGGAAGCATTACG 467
|| | |||| ||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 652 GAAAGGTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGTAGTGATTGGAAGCATTATG 711
Query 468 TTAGGAGAAAACCTCATGTTGT-CAAGAGGCGGATTCGAAAAGGGATCCCTGATTGCTTA 526
|||||||||||||| ||||||| | | ||||| || ||||||||||||||||||||||||
Sbjct 712 TTAGGAGAAAACCTAATGTTGTCCGA-AGGCGTATACGAAAAGGGATCCCTGATTGCTTA 770
Query 527 AGGGGTCTCGTTTGGCAATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGGT 586
|| ||||| |||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct 771 AGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGGGACCTTTTGCTTATGAATCCTGGT 830
Query 587 GTTTATGTGCAACTGGTGATTTATGAGACGTCGGCATCAGAACTCGATATCATTCGGGAT 646
||||||| |||| ||||||||||||| || ||||||||||| || ||||||||||| ||
Sbjct 831 GTTTATGAGCAATTGGTGATTTATGAAACATCGGCATCAGAGCTTGATATCATTCGAGAC 890
Query 647 ATATCTCGTACTTTCCCGTCACATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAGA 706
||||| ||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct 891 ATATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCCGGGCAAAGA 950
Query 707 TCATTATACAATGTTCTAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCAG 766
|| || |||||||| || || || ||||| || |||||||||||||| ||||||||||||
Sbjct 951 TCGTTGTACAATGTCCTTAAGGCGTACTCAGTTTATGACAGAGATGTTGGATATGTTCAG 1010
Query 767 GGAAT-GGGTTTCATAGCCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCTG 825
|| || |||||| ||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 1011 GGGATGGGGTTT-ATAGCGGGTTTGTTGCTTCTGTATATGAGCGAAGAAGATGCGTTCTG 1069
Query 826 GTTATTAGTTGCATTACTCAAAGGAGCTGTCCACT-CCCCAATAGAAGGATTGTATCAGG 884
|||||||||||||||||| ||||||||||| || | | ||||| |||||||||||||| |
Sbjct 1070 GTTATTAGTTGCATTACTAAAAGGAGCTGTTCA-TGCTCCAATGGAAGGATTGTATCACG 1128
Query 885 CAGGGCTTCCTCTTGTACAGCAATATCTGTTACAGTTTGATCAG-TTGGTAAGAGAGCTA 943
||||||||||||||||||||||||| ||||| ||||| || || ||||||| |||||||
Sbjct 1129 CAGGGCTTCCTCTTGTACAGCAATACCTGTTTCAGTTAGA-AAGCTTGGTAAAAGAGCTA 1187
Query 944 ATGCCCAAACTAGGAGAACATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAGT 1003
|| || || || ||||||||||| |||||||||||||| | ||| |||||||||||||||
Sbjct 1188 ATTCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTACTCCAAGTATGTATGCAAGT 1247
Query 1004 CAATGGTTCATAACCGTCTTTTCGTATTCACTTCCTTTCCATTCAGCGCTACGAATTTGG 1063
||||||||||| |||||||| || |||||| ||||||||| || || ||||| || |||
Sbjct 1248 CAATGGTTCATCACCGTCTTCTCTTATTCATTTCCTTTCCCTTTGGCTCTACGGATATGG 1307
Query 1064 GATGTGTTTCTAGCTGAGGGTGTTAAAATCGTGTTCAAAGTCG-GTTTAGCATTATTGAA 1122
||||||||||| |||||||||||||||||||||||||||| | | |||||||| ||||
Sbjct 1308 GATGTGTTTCTCTCTGAGGGTGTTAAAATCGTGTTCAAAGT-GAGCTTAGCATTGCTGAA 1366
Query 1123 GCATTGCCATGATGATTTGTTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGAA 1182
| ||||||| ||||| ||| | ||||| || |||||| |||| || |||||||||| ||
Sbjct 1367 GTATTGCCAAGATGAGTTGGTAAAATTACCGTTTGAGAAACTAATACATGCTCTGAA-AA 1425
Query 1183 -TTTCCCTGAAGATGCCATGGATCCTGATACTTTGCTTCCATTGGCTTATTCC-ATTAAG 1240
|||||| ||||| || ||| |||| ||||| ||||||||||||||||| || || |||
Sbjct 1426 CTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTAC-CCTATCAAG 1484
Query 1241 GTATCAAAGCGTTTGGAAGAAATGAAACAGGATTGTGACAAG 1282
||||||||||||||||||||| |||||| ||| | ||| |||
Sbjct 1485 GTATCAAAGCGTTTGGAAGAACTGAAACTGGAGTATGAGAAG 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5