BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15940.1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893505 jgi|Araly1|893505|Al_scaffold_0006_1501 1541 0.0
> Ahg893505 jgi|Araly1|893505|Al_scaffold_0006_1501
Length=1047
Score = 1541 bits (834), Expect = 0.0
Identities = 981/1051 (93%), Gaps = 14/1051 (1%)
Strand=Plus/Plus
Query 55 ATGGTTCTGTTTTGGAATATTGCTCTTGTTTCTTCTTACT-TTCAATTGCTTAAAGCAAG 113
||||||||||| |||| ||| ||||||||||||||||| | |||||||||||| ||||||
Sbjct 1 ATGGTTCTGTTCTGGAGTATCGCTCTTGTTTCTTCTTA-TCTTCAATTGCTTAGAGCAAG 59
Query 114 GATCTTTGGCTCCAAATCTACTTCC-ATATCTGGCTCCATCAATCCACAAAATGGATCTT 172
| |||||||||| ||| |||| ||| || ||| |||||||||||||||| ||||||||||
Sbjct 60 GGTCTTTGGCTCAAAAGCTAC-TCCTATTTCTTGCTCCATCAATCCACATAATGGATCTT 118
Query 173 CTAGACCCATTTGTGTTATCACTGGTGCTACTTCTGGGCTTGGTAAGGCCACTGCATTTG 232
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGAGACCCATTTGTGTTATCACTGGTGCTACTTCTGGGCTTGGTAAGGCCACTGCATTTG 178
Query 233 CTCTTGCAGAGAAAGGTTTCTACGTCGTTCTTGTTGGACGGTCCTCTCAGCTTCTTTCAG 292
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 CTCTTGCAGAGAAAGGTTTCTACGTTGTTCTTGTTGGACGGTCCTCTCAGCTTCTTTCAG 238
Query 293 AGACCCTGAAGGAAATTAAGAACAAGAACAAAGATGCTCAACTCAAGTCTTTCGAAGCTG 352
|||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 239 AGACATTGAAGGAAATTAAGAACAAGAACAAAGATGCCCAACTCAAGTATTTCGAAGCTG 298
Query 353 ACATGTCTTCATTTGAATCAATCTTCACGTTTAAAAACTCTCTAGAGCAATGGCTCTCGG 412
||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct 299 ACATGTCTTGTTTTGAATCAATCTTCAAGTTGAAAAACTCTCTAGAGCAATGGCTATCGG 358
Query 413 ACTCAGCGTTACATCCTTCTATTCAGGTTTTGGTGAACAATGCTGGGATCTTGGCAACTT 472
|||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct 359 ACTCAGAGTTACATCCTTCGATTCAGCTTTTGGTGAACAATGCTGGGATATTGGCAACTT 418
Query 473 CTAGTCGACCAACCATTGATGGTTATGACAGGATGATTGCTACAAACTATGTTGGTCCAT 532
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 419 CTAGTCGACCAACCATTGATGGTTATGACAGGATGATTGCTACAAACTATATTGGTCTAT 478
Query 533 TCTTTTTGACCAAACTTCTTCTACCACTTCTGAAAAACAGCAATGTTCCTTCACGGGTCG 592
||| |||||||||||||||| | |||||||||||||| ||| | ||||||||||||||||
Sbjct 479 TCTCTTTGACCAAACTTCTTTTGCCACTTCTGAAAAATAGCTACGTTCCTTCACGGGTCG 538
Query 593 TTAACGTTACATCTTTCACACATCATTCAGCTTTTATTCAAAAGCT-AGACAAGGATTCT 651
|||||||||||||||||||||||| ||||||||| ||||||||| | | ||||||| |||
Sbjct 539 TTAACGTTACATCTTTCACACATCGTTCAGCTTTCATTCAAAAGTTCA-ACAAGGACTCT 597
Query 652 GTTACTGGAGTGTGTTTTTCGACATCAAACCAATATCCATGCGCTCGAATCTACGAGTAT 711
|| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 598 GTAACTGGAGTATGTTTTTCTACATCAAACCAATATCCTTGCGCTCGAATCTACGAGTAT 657
Query 712 TCTAAATTATGTCTTCTACTGTTCTCATATGAATTGCACCGACAACTTCGGCTCATAGAC 771
||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 658 TCTAAATTATGTCTTGTACTGTTCTCATATGAATTGCACAGACAGCTTCGGCTCTTAGAC 717
Query 772 GACTCAAGCCATGTCTCTGTAATAGCTGCTGATCCAGGATTTGTGAAAACGAATATAATG 831
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GACTCACGCCATGTCTCTGTAATAGCTGCTGATCCAGGATTTGTGAAAACGAATATAATG 777
Query 832 CGTGAGCTTCCTTGTTACATAACTTCCATGGTGTTTCTTGGCTTCAAAATTCTTGGCCTC 891
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 AGAGAGCTTCCTTGTTACATAACTTCCATGGTGTTTCTTGGCTTCAGAATTCTTGGCCTA 837
Query 892 CTGCAATCCCCAGAGGATGGAGCTGAATCTATCATCGATGCCGCTTTATCCACACCCGAA 951
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 CTGCAATCCCCAGATGATGGAGCTGAATCTATCATCGATGCCGCTTTATCCACACCGGAA 897
Query 952 ACATCAGGTGCTTACTATTTTGGAGGAAAAGGAAGGACCATTGAATCATCACAAGTTTCT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ACATCAGGTGCTTACTATTTTGGAGGAAAAGGAAGGACCATTGAATCATCACAAGTTTCT 957
Query 1012 AGAGACCCTAAACTTGCTAAACAACTCTGGGAAA-CATCTTGTGATTTGTTCAATGACTT 1070
|||||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 958 AGAGACCCGAAACGTGCTAAACAACTCTGGGAAATC-TCTTGTGATTTGTTCAATGACTT 1016
Query 1071 GCA---GC-T-T-CTTCATCACCACAACTAA 1095
||| || | | |||||||| ||||||||
Sbjct 1017 GCACTTGCATCTTCTTCATCAAAACAACTAA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46891187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5