BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15948.1
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488445 jgi|Araly1|488445|fgenesh2_kg.6__1579__AT5G15948.1 1755 0.0
Ahg477481 jgi|Araly1|477481|fgenesh2_kg.3__182__AT3G02468.1 835 0.0
> Ahg488445 jgi|Araly1|488445|fgenesh2_kg.6__1579__AT5G15948.1
Length=1645
Score = 1755 bits (950), Expect = 0.0
Identities = 1142/1231 (93%), Gaps = 28/1231 (2%)
Strand=Plus/Plus
Query 471 GATGGCCATGTCTGCTATTGGCTTCGAAGGTTACGAGAAGCGGCTTGAAGTTACTTTCTT 530
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 426 GATGACCATGTCTGCTATTGGCTTCGAAGGCTACGAGAAGCGTCTTGAAGTTACTTTCTT 485
Query 531 TGAGCCTGGTCTCTTTCTTGACACTCAAGGAAAAGGGCTACGTG-CTTTAGCTAAGTCTC 589
|||||||||||||||||||||||||||||| ||||| ||||||| ||| | | || ||||
Sbjct 486 TGAGCCTGGTCTCTTTCTTGACACTCAAGGTAAAGGTCTACGTGCCTTGA-CCAAATCTC 544
Query 590 AGATCGATGAGATTCTTCAGCCAGCTGAGTGCACTATCGTCTCATCTCTCTCGAACGATC 649
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 545 AGATCGATGAGATTCTTCAACCAGCTGAGTGCACTATCGTTTCATCTCTCTCGAACGATC 604
Query 650 AGCTTGACTCTTATGTTCTCTCTGAGTCCAGTCTCTTTATCTTCCCGTACAAGATCGTCA 709
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 605 AGCTCGACTCTTATGTTCTCTCTGAGTCCAGTCTCTTTATCTTCCCTTACAAGATTGTCA 664
Query 710 TCAAGACTTGCGGTACTACTAAGCTCCTCCTCTCTATTGAGCCTCTCTTGAGGTTAGCCG 769
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 665 TCAAAACTTGCGGGACTACTAAGCTCCTCCTCTCTATTGAGCCACTCTTGAGGTTAGCTA 724
Query 770 GTGAGCTTTCTCTTGACGTTAAGGCTGTGAGGTACACTCGTGGAAGTTTCCTCTGTCCTG 829
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 725 GTGAGCTTTCTCTTGACGTCAAGGCTGTGAGGTACACTCGTGGAAGCTTCCTCTGTCCTG 784
Query 830 GAGGACAACCATTCCCTCACCGCAACTTCTCTGAAGAAGTCTCTGTTCTTGATGGTCACT 889
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 785 GAGGACAACCATTCCCTCACCGCAACTTCTCTGAAGAAGTCTCTGTGCTTGATGGTCACT 844
Query 890 TTGCTAAGCTT-GGTTTAAGCAGTGTTGCCTACTTGATGGGCAATGACGATGAAACCAAG 948
|||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 845 TTGCTAAG-TTGGGTTTGAGCAGTGTTGCGTACTTGATGGGCAATGACGATGAAACCAAG 903
Query 949 AAATGGCATGTTTACTCTGCTTCTTCTGCCAACAGCAACAACAAGAACAATGTCTACACG 1008
|||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 904 AAATGGCATGTTTACTCTGCTTCTTCTGATAACAACAACAACAACAACAATGTCTACACT 963
Query 1009 CTTGAGATGTGTATGACTGGTCTAGACAAAGACAAGGCATCTGTCTTCTACAAGAACGAG 1068
|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 964 CTCGAGATGTGTATGACTGGTCTGGACAAAGACAAGGCATCTGTCTTCTTCAAGAACGAG 1023
Query 1069 TCAAGCTCTGCTGGTTCTATGACTGATAACTCTGGCATCAGAAAGATACTGCCTCAATCC 1128
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1024 TCAAGCTCAGCTGGTTCTATGACTGATAACTCTGGCATCAGAAAGATACTTCCTCAATCC 1083
Query 1129 CAAATCTGTGACTTTGAGTTTGAGCCCTGTGGCTACTCAATGAACAGCATCGAAGGCGAC 1188
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1084 CAAATCTGTGACTTTGAGTTTGAGCCATGTGGCTACTCAATGAACAGCATCGAAGGTGAC 1143
Query 1189 GCAATCTCTACCATCCATGTAACTCCAGAGGATGGTTTCAGCTACGCTAGCTTTGAAGCA 1248
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1144 GCAATCTCCACCATCCATGTGACTCCAGAAGATGGTTTCAGCTACGCTAGCTTTGATGCA 1203
Query 1249 GTGGGATATGATTTCACAACCATGGACTTGAGCCATCTTGTCTCAAAGGTACTAACTTGC 1308
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1204 GTGGGATACGATTTCACAACCATGGACTTGAGCCATCTGGTCTCAAAGGTACTAACTTGC 1263
Query 1309 TTCAAACCAAAACAATTCTCTGTAGCTGTCCACTCGACCGTGGCACAGAA-GAGCTA-CG 1366
||| | ||||| ||||||||||||||||||||||| | ||| ||||| || | | || |
Sbjct 1264 TTCGAGCCAAAGCAATTCTCTGTAGCTGTCCACTCTAGCGTCGCACAAAATG-GGTATC- 1321
Query 1367 ACTCTGGTCTCTCTGTGGACCTAGACGATTACGGATGCAAAGAGTCAACAATGGAGTCTC 1426
|||||||||| | ||| |||||||||||||||| ||||| |||| |||||||||||||||
Sbjct 1322 ACTCTGGTCTATGTGTTGACCTAGACGATTACGAATGCAGAGAGACAACAATGGAGTCTC 1381
Query 1427 TAGGAGAAGAGAGAGGAACAGTGATGTATCAGAGGTTTGAGAAGCTAGGAAGGTATTGTG 1486
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1382 TAGGAGAAGAGAGAGGAACAGTGATGTATCAGAGGTTTGAGAAGCTTGGAAAGTATTGTG 1441
Query 1487 GTTCTCCGAGATCTACCTTGAAATGTGAGTGGAGCAGCAACAGTAGCTGCAACAGCGAGG 1546
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 GTTCTCCGCGATCTACCTTGAAATGTGAGTGGAGCAGCAACAGTAGCTGCAACAGCGAGG 1501
Query 1547 ACGAGAAGGA--A-TAGGGAATCTAAAAGCTCAAGtttttaattttcgttttcttgaata 1603
|||||||||| | ||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 1502 ACGAGAAGGAGGAATAGGGAATCTAAA-GCTCAAGTTTTTAATTTT-GTTTTCTCGAATA 1559
Query 1604 at----gtcttatggatatttttcttcttcttcttatttcCCTTAAACCAGTGTTTG-T- 1657
|| || |||||||||||||| | |||||| || || |||||||||||||| ||| |
Sbjct 1560 ATTAATGTGTTATGGATATTTTT-T-CTTCTT-TT-TT-CCCTTAAACCAGTGATTGATT 1614
Query 1658 GTCT--G-G-TCTATGTGAATTCGGATGATC 1684
|||| | | |||||||||||||||||||||
Sbjct 1615 GTCTCTGTGGTCTATGTGAATTCGGATGATC 1645
Score = 525 bits (284), Expect = 4e-148
Identities = 388/434 (89%), Gaps = 23/434 (5%)
Strand=Plus/Plus
Query 1 AATATCACAAACTCG-TT--T-GCTCTTTTCATCATTACTAAATCATAAGCGGCTCTC-- 54
|||||| |||||||| || | |||||||||||||||| ||||||||||||||||||
Sbjct 1 AATATCTCAAACTCGTTTCCTCTCTCTTTTCATCATTACCAAATCATAAGCGGCTCTCTT 60
Query 55 AAGTTCTTTAGGGTTTCGAGTTTTCTCAATCTCCTACCTGATT-A--A-GTTCAGGTTAA 110
|| | ||||||||||||||||||||||| | | |||||||| | | ||| |||
Sbjct 61 AA--TATTTAGGGTTTCGAGTTTTCTCAA--T-C-ACCTGATTAAGCAGGTTTTCGTTCG 114
Query 111 TTTCTTATCTTGGATCAATAACAAGAGAATTAT-AACTCCGGATTGTAATCAATATTCCT 169
|||| |||||||||||||| ||||||||||||| |||||||||| || ||||||||||||
Sbjct 115 TTTCATATCTTGGATCAATTACAAGAGAATTATAAACTCCGGATCGTGATCAATATTCCT 174
Query 170 CTACATAAAAAGCGTGAATGAGATTATGATGGAATCGAAAGCTGGTAATAAGAAGTCAAG 229
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 175 TTACATAAAAAGCGTGAATGAGATTATGATGGAATCGAAAGGTGGCAATAAGAAGTCAAG 234
Query 230 CAGCAATAGTTCCTTATGTTACGAAGCACCCCTTGGTTACAGCATTGAAGACGTTCGTCC 289
|| | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CA-C-A-AGTTCCTTATTTTACGAAGCACCCCTTGGTTACAGCATTGAAGACGTTCGTCC 291
Query 290 TTTCGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCCAACTGCGCTAAGAGGCCTTC 349
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 292 TTACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCTAACTGCGCTAAGAGGCCTTC 351
Query 350 CTGAGTACTAGCCAGTTCCCTCCATAGCTTTTCAATTACAACAATCTCCTTTTC-T--CA 406
|||||||| ||||| || | |||||||||||||||||||||||||||||||||| | ||
Sbjct 352 CTGAGTACCAGCCAATTTCTTCCATAGCTTTTCAATTACAACAATCTCCTTTTCATTTCA 411
Query 407 AAGCTCTGGTTCCC 420
||||||||||||||
Sbjct 412 AAGCTCTGGTTCCC 425
> Ahg477481 jgi|Araly1|477481|fgenesh2_kg.3__182__AT3G02468.1
Length=1691
Score = 835 bits (452), Expect = 0.0
Identities = 924/1144 (81%), Gaps = 64/1144 (6%)
Strand=Plus/Plus
Query 458 acaacaacGCAGAGATGGCCATGTCTGCTATTGGCTTCGAAGGTTACGAGAAGCGGCTTG 517
||||||| || ||||||||| | ||||| || || ||||||||||||||||| ||||| |
Sbjct 514 ACAACAAGGC-GAGATGGCCTTATCTGCAATCGGTTTCGAAGGTTACGAGAAACGGCTCG 572
Query 518 AAGTTACTTTCTTTGAGCCTGGTC-TCTTTCTTGACACTCAAGGAAAAGGG-CTACGTGC 575
| ||||||||||||||||| | | |||||| ||| | ||||| | ||| || |||||
Sbjct 573 AGGTTACTTTCTTTGAGCCAAG-CATCTTTCAAGACTC-CAAGGGACTGGGACTCCGTGC 630
Query 576 T-TTAGCTAAGTCTCAGATCGATGAGATTCTT-CAGCCAGCTG-AGTGCACTATCGTCTC 632
| ||| | ||||| ||| | ||||| |||||| || || |||| | ||||| ||||| ||
Sbjct 631 TCTTA-CCAAGTCCCAGCTTGATGAAATTCTTACA-CCTGCTGCA-TGCACGATCGTTTC 687
Query 633 ATCTCTCTCGAACGATCAGCTT-GACTCTTATGTTCTCTCTGAGTCCAGTC-TCTTTATC 690
|||||||| |||||||| || |||||||| || |||||||||||||| | ||||| ||
Sbjct 688 TTCTCTCTCCAACGATCA-ATTGGACTCTTACGTACTCTCTGAGTCCAG-CTTCTTTGTC 745
Query 691 TTCCCGTAC-AAGATCGTCATCAAGACTTGCGGTACTACTAAGCTCCTCCTCTCTAT-TG 748
| ||| ||| ||| || ||||||||||||||||||| || |||||||||||||||||
Sbjct 746 TACCCCTACAAAG-TCATCATCAAGACTTGCGGTACCACGAAGCTCCTCCTCTCTATCCC 804
Query 749 AGCCTC-TCTTGAGGTTAGCCGGTGAGCTTTCTCTTGACGT-T-AAGGCTGTGAGGTACA 805
| || | || | | | | || |||||||| ||| |||| || | ||| |||||| |||||
Sbjct 805 A-CCACTTC-TAAAGCTGGCTGGTGAGCTCTCT-TTGA-GTGTCAAGTCTGTGAAGTACA 860
Query 806 CTCGTGGAAGTTTCCTCTGTCCTGGAGGACAACCATTCCCTCACCGCAACTTCTCTGAAG 865
||||||| |||||||| || ||||| || || ||||||||||||| |||||||||||
Sbjct 861 CTCGTGGCTCCTTCCTCTGCCCCGGAGGCCAGCCTTTCCCTCACCGCAGCTTCTCTGAAG 920
Query 866 AAGTCTCTGTTCTTGATGGTCACTTTGCTAAGCTTGGTTT-AAGCAGTGTTGCCTACTTG 924
||||||||||||||||||| |||||| || |||| || || || ||| || |||||||||
Sbjct 921 AAGTCTCTGTTCTTGATGGGCACTTTACTCAGCTGGGCTTGAA-CAGCGTAGCCTACTTG 979
Query 925 ATGGGCAATGACGATGAAACCAAGAAATGGCATGTTTACT-CTGCTTCTTCTGCC-A--A 980
||||||||||| ||||| || |||||||||||||| || | |||| || ||||| | |
Sbjct 980 ATGGGCAATGATGATGAGACTAAGAAATGGCATGTCTA-TGCTGC--CT-CTGCCCAGGA 1035
Query 981 C---AGCAACAACAAGAACAATGTCTACACGCTTGAGATGTGTATGACTGGTCTAGACAA 1037
| |||||| ||| |||||||||||||| || |||||||| ||||||||||| ||||
Sbjct 1036 CTCCAGCAACTGCAACAACAATGTCTACACTCTCGAGATGTGCATGACTGGTCTGGACAG 1095
Query 1038 AGACAAGGCATCTGTCTTCTACAAGAACGA-G-T--CAAGCTCTGCTGGTTCTATGACTG 1093
||| || || |||||||||||||||||||| | | ||| ||| ||| | |||||||
Sbjct 1096 AGAGAAAGCTTCTGTCTTCTACAAGAACGAAGCTGACAAAA-CTG--GGT-CAATGACTG 1151
Query 1094 ATAACTCTGGCATCAGAAAGATACTGCCTCAATCCCAAATCTGTGACTTTGAGTTTGAGC 1153
| |||||||| ||| ||||||| || || || ||||| ||||| |||||||| || ||||
Sbjct 1152 ACAACTCTGGAATCCGAAAGATCCTTCCCCAGTCCCAGATCTGCGACTTTGAATTCGAGC 1211
Query 1154 CCTGTGGCTACTCAATGAACAGCA-TCGAAGGCGACGCAATCTCTACCATCCATGTAACT 1212
||||||||||||| |||||| || | ||||| || |||||||| || |||||||| ||
Sbjct 1212 CCTGTGGCTACTCTATGAACT-CAATTGAAGGGGATGCAATCTCCACGATCCATGTGACC 1270
Query 1213 CCAGAGGATGG-TTTCAGCTACGCTAGCTTTGAAGCAGTGGGATATGATTTCA-CAACCA 1270
|| || ||||| ||| |||||||||||||||||||| ||||| || || |||| || | |
Sbjct 1271 CCTGAAGATGGGTTT-AGCTACGCTAGCTTTGAAGCTGTGGGTTACGACTTCAACA-CTA 1328
Query 1271 TGGACTTGAGCCATCTTGTCTCAAAGGTACTAACTTGCTTCAAACCAAAACAATTCTCTG 1330
| ||| ||||||| || || ||| |||||| |||||||| | || || ||||||||||
Sbjct 1329 TTGACCTGAGCCAGCTGGTGACAAGGGTACTCTCTTGCTTCGAGCCCAAGCAATTCTCTG 1388
Query 1331 TAGCTGTCCACTCGACCGT-GGCA-CAGAA-GAGCTACGA-CTCTG-GTCTCTCTGTGGA 1385
||||||| ||||||| ||| || | | ||| | | ||| | | | | | || |||| ||
Sbjct 1389 TAGCTGTGCACTCGAGCGTTGG-AGC-GAACGCG-TACAAGC-CAGAGA-TCACTGTAGA 1443
Query 1386 CCTAGACGATTACGGATGCAAAGAGTCAACAATGGAGTCTCTAGGAGAAGAGAGAGGAAC 1445
| | || || || || |||| |||| ||| | |||||||||||||||||||| |||||
Sbjct 1444 CTTGGAAGACTATGGGTGCAGAGAGAGGACATTTGAGTCTCTAGGAGAAGAGAGTGGAAC 1503
Query 1446 AGTGATGTATCAGAGGTTTGAGAAGCTAGG-AAGGTATTGTGGTTCTCCGAGATCTACCT 1504
|||||||||||||| |||||||||||| || ||| || ||||| || || ||||||||||
Sbjct 1504 AGTGATGTATCAGACGTTTGAGAAGCTTGGTAAG-TACTGTGGATCGCCTAGATCTACCT 1562
Query 1505 TGAAATGTGAGTGGAGCAGCAACAGTAGCTGCAACAGCGAGGACGAGAAGGAATAGGGAA 1564
|||| ||||| ||||||||||||| |||||||| |||||||||||||||||| ||||||
Sbjct 1563 TGAAGTGTGAATGGAGCAGCAACAATAGCTGCAGCAGCGAGGACGAGAAGGACGAGGGAA 1622
Query 1565 TCTA 1568
||||
Sbjct 1623 TCTA 1626
Score = 248 bits (134), Expect = 1e-64
Identities = 168/185 (91%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177 AAAAGCGTGAATGAGATTATGATGGAATCGAAAGCTGGTAATAAGAAGTCAAGCAGCAAT 236
|||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||| | |
Sbjct 196 AAAAGCGTGAATGAGATTATGATGGAGTCGAAAGGTGGTAAAAAGAAGTCCAGCAGTAGT 255
Query 237 AGTTCCTTATGTTACGAAGCACCCCTTGGTTACAGCATTGAAGACGTTCGTCCTTTCGGT 296
|||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 256 AGTTCCTTATTTTACGAAGCTCCCCTCGGTTACAGCATTGAAGACGTTCGTCCAAACGGT 315
Query 297 GGAATCAAGAAATTCAAATCTTCTGTCTACTCCAACTGCGCTAAGAGGCCTTCCTGAGTA 356
|||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||||
Sbjct 316 GGAATCAAGAAATTCAAATCTTCTGTCTACTCTAACTGCTCCAAGAGGCCATCCTGAGTA 375
Query 357 CTAGC 361
| |||
Sbjct 376 CCAGC 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67648275120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5