BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G15970.1

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488447 jgi|Araly1|488447|fgenesh2_kg.6__1581__AT5G15970.1         497    2e-140


> Ahg488447 jgi|Araly1|488447|fgenesh2_kg.6__1581__AT5G15970.1
Length=454

 Score =  497 bits (269),  Expect = 2e-140
 Identities = 417/481 (87%), Gaps = 40/481 (8%)
 Strand=Plus/Plus

Query  10   AAAACACACATCAAAAACGATTTTACAAGaaaaaaaTATCTGAAAAATGTCAGAGACCAA  69
            |||||||||||||||||||||||||||||    | | |    ||||||||||||||||||
Sbjct  1    AAAACACACATCAAAAACGATTTTACAAG----AGA-A----AAAAATGTCAGAGACCAA  51

Query  70   CAAGAATGCCTTCCAAGCCGGTCAGGCCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTCT  129
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  52   CAAGAATGCCTTCCAAGCCGGTCAGACCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTCT  111

Query  130  GCTGGACAAGGCCAAGGATGCTGCTGCTGCAGCTGGAGCTTCCGCGCAACAGGCGGGAAA  189
             || ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct  112  TCTCGACAAGGCCAAGGATGCTGCTGCTGGAGCTGGAACTGCCGCGCAACAGGCGGGAAA  171

Query  190  GAGTATATCGGATGCGGCAG-TGGGAGGTGTTAACTTCGTGAAGGACAAGACCGGCCTGA  248
            |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||
Sbjct  172  GAGTATATCGGATGCGGCAGCTGG-AGGTGTTAACTTCGTGAAGGAGAAGACCGGCATGA  230

Query  249  ACAAGTAGCGATCCGAGTCAACTTTGGGAGTTATA-AT--TT-CCCTT-T-T---CTAAT  299
            |||||||||||| ||||||||  |||||||||||| ||  || ||||| | |   |||||
Sbjct  231  ACAAGTAGCGATTCGAGTCAAAATTGGGAGTTATATATAATTTCCCTTATCTAATCTAAT  290

Query  300  TAATTGTTGGGATTTTCAAATAAAATTTGGGAGTCATAATTGATTCTCGTACTCATCGTA  359
            |||||||||||||||| ||||||| || |||| |||||||||||||||   ||  | || 
Sbjct  291  TAATTGTTGGGATTTT-AAATAAACTT-GGGACTCATAATTGATTCTC---CT--T-GT-  341

Query  360  CTTGTTGTTGTTTTTAGTGTTGTAATGTTTTAATGTTTCTTCTCCCTTTAGATGTACTAC  419
             | |||||  |||  ||||||||||||||||||||||||||||||||||||||||| |  
Sbjct  342  -T-GTTGTC-TTT--AGTGTTGTAATGTTTTAATGTTTCTTCTCCCTTTAGATGTA-T--  393

Query  420  GTTTGGAACTTTAAGT-TTAAT--CAACAAAATCTAGTTTAAGTTCTAAGAACTTTGTTT  476
            |||||||  |||| || ||  |  |||||| |||||||||| |||| || ||||||||||
Sbjct  394  GTTTGGATGTTTATGTATTTTTAGCAACAACATCTAGTTTATGTTCCAACAACTTTGTTT  453

Query  477  T  477
            |
Sbjct  454  T  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17398948584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5