BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15980.1
Length=2540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488448 jgi|Araly1|488448|fgenesh2_kg.6__1582__AT5G15980.1 3517 0.0
Ahg927732 jgi|Araly1|927732|scaffold_300189.1 1432 0.0
Ahg908198 jgi|Araly1|908198|Al_scaffold_0002_1279 857 0.0
Ahg891288 jgi|Araly1|891288|Al_scaffold_0007_3274 773 0.0
> Ahg488448 jgi|Araly1|488448|fgenesh2_kg.6__1582__AT5G15980.1
Length=2420
Score = 3517 bits (1904), Expect = 0.0
Identities = 2283/2459 (93%), Gaps = 53/2459 (2%)
Strand=Plus/Plus
Query 47 AAATCAAAATCCTCACTAAAACCCTAACATTTCCCAGAGCTTCGCAATCGCTGTTCTTCA 106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAATCAAAATCCTCACTAAAACCCTAACATTTCCCAGAGCTTCGCAATCGCTGTTCCTCC 60
Query 107 GTCTCGCTTC-TTTGTAAACTGTAAAGGATCAAGCTTTTCT-ATTCAGATCAAATCCACT 164
|||| | || ||| | | ||||||||||||||||| | ||||||||||| ||||
Sbjct 61 GTCT--C-TCGTTTCT--TC-CTAAAGGATCAAGCTTTT-TGATTCAGATCAAGTCCA-A 112
Query 165 TCA-CTATACCCTTTTTTAGTTTCGTTAACCCAGCTCAAATCCGAGATGAGATATCAACA 223
| | | ||| ||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct 113 TAACCGATAGCCTTTGGTATTTTCGGTAACCCAGATCAAATCCGAGATGAGATATCAACA 172
Query 224 ATGGCGATTGATGCTTCTTCGAAGCTACCATCGTTCTCATCTTCCTTATCTATCTCCTTG 283
|||||||||| |||||||||| | ||||||||| ||||| | | || ||||||||
Sbjct 173 ATGGCGATTGCTGCTTCTTCGTACCTACCATCGATCTCA---T-C----CT-TCTCCTTG 223
Query 284 TTCTCAGGTAACCTCCATTTCATCGCGATCTTTCTCTTCTTTCATTCA-C--C---CTGG 337
|||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||
Sbjct 224 TTCTCAGGTAACCTCCATTTCAACGCGATCTTTCTCTTCTTTCATTCACCTACGTTCTGG 283
Query 338 GATCGGAGCTTTGCAACAAAGTGAACAACTTTGTCCCTTACGATCCCCAATGACGAGCTC 397
||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||
Sbjct 284 GATCGGAGCTTTGCAACAAAGCGAACAACTTGGTTCCTTACGATCCCCAATGAAGAGCTC 343
Query 398 TGGCA-ACTTAGTGAAATCAGTGGGTCGAAGCTTCTCGTCCGAGCCTGCGGTTGAAGAGA 456
||| | ||| | || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 344 TGG-ATCCTTTGGGATATCAGTGGGTCGAAGCTTCTCGTCTGAGCCTGCGGTTGAAGAGA 402
Query 457 AATCTTCTGCTGAGGCTACCGTGATTGATATTTTTAGTAGATTGAGTGGTGAGGATGAGA 516
||||||||||||||| || |||||||||||| || || |||||||||||||||||||| |
Sbjct 403 AATCTTCTGCTGAGGTTATCGTGATTGATATCTTCAGCAGATTGAGTGGTGAGGATGATA 462
Query 517 TTAGGAAGGAGTTGGAATCGAGTGGTGTAGTGATTAGCCAAGATTTAGCTTTGAAGGTTT 576
||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 463 TTAGGAAAGAGTTGGAATCGAGTGATGTAGTGATTAGCCAGGACTTAGCTTTGAAGGTTT 522
Query 577 TGAGAAAGCTCGAATCAAACCCTGATGTTGCCAAAAGTTTTTTCCAGTGGATTAAGGAGG 636
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 523 TGAGAAAGCTCGAATCAAACCCCGATGTTGCGAAAAGGTTTTTCCAGTGGATTAAGGAGG 582
Query 637 CTTCTCCTGAGGAACTTAGCTCGAAGAACTATAACATGATGCTGCGGATTCTGGGTGGTA 696
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 583 CTTCTCCTGAGGAACTTAGCTCGAAGAACTATAACATGATGCTGCGTATTCTGGGTGGTA 642
Query 697 ATGGACTTGTTGATGAGTTTTGGGGGTTGGTTGATGTGATGAAGAAGAAAGGGCATGGTT 756
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 643 ATGGACTTGTCAATGAGTTTTGGGGGTTGGTTGATGTGATGAAGAAGAAAGGACATGGTT 702
Query 757 TATCGGCTAATGTTAGAGATAAAGTGGGTGACAAATTTCAGAAAGATGGGCTGGAGAGTG 816
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 703 TATCGGCTAATGTTAGGGATAAAGTAGGTGAGAAATTTCAGAAAGATGGGCTGGAGAGTG 762
Query 817 ATTTGCTGAGGCTGAGAAAGCTTTTTACTTCAGATTGTTTAGATAATTCGGCGGAGAATG 876
||||| || | || |||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 763 ATTTGGTGCGACTTAGAAAGTTTTTTGCTTCAGATTGTTTAGATAGTTCGGCGGAGAATG 822
Query 877 TTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAATGGGGTGATGATGTAGAGAAAC 936
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 823 TTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAATGGGGTGATGATGTGGAGAAAC 882
Query 937 GGGTAAGAGATTTGAATGTTGAGTTTAAGAGTGATTTAGTGAAGATGATTGTGGAACGTC 996
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 883 GGGTGAGAGATTTGAATGTTGAGTTTAAGAGTGATTTAGTGAAGATGATTGTGGAAAGTC 942
Query 997 TTGATGTTGAACCCAGGAAAGCTTTGTTGTTCTTCCGGTGGATTGATGAGTCTGATCTCT 1056
||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 943 TTGATGTTGTACCTAGGAAAGCTTTGTTGTTCTTTCGGTGGATTGATGAGTCTGGTCTTT 1002
Query 1057 TTAAGCATGATGAGAAAACCTATAATGCTATGGCTAGGGTTTTGGGAAAAGAGAAGTTTC 1116
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1003 TTAAGCATGATGAGAAAACTTATAATGCTATGGCTAGGGTTTTGGGAAAAGAGAAATTTC 1062
Query 1117 TTGATAGATTTCAGAACATTGTAGTAGAAATGAGGAGTGCTGGTTATGAAGTGGAAATAG 1176
| ||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||
Sbjct 1063 TCGATAGATTTCAGAACATCGTTGAAGAAATGAGGAGTGTTGGTTATGAAGTGGAAATAG 1122
Query 1177 AGACTTATGTTAGAGTTTCAACGAGGTTCTGCCAGACTAAATTGATCAAGGAAGCTGTTG 1236
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1123 AGACTTATGTTAGAGTTTCAACAAGGTTCTGCCAGACTAAATTGATCAAGGAAGCTGTTG 1182
Query 1237 ACTTGTTTGAGATTGCAATGGCAGGTAGTAGTAGTAGTAACAACCCCACCCCACACTGCT 1296
|||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||
Sbjct 1183 ACTTGTTTGAGATTGCTATGGCA-G--GTAGTAGTAGTAACAAACCCACCCCACACTGCT 1239
Query 1297 TCTGTTTGTTGCTCAAGAAAATTGTCACTGCCAAGATTCTAGATATGGATTTGTTTTCAA 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TCTGTTTGTTGCTCAAGAAAATTGTCACTGCCAAGATTCTAGATATGGATTTGTTTTCAA 1299
Query 1357 GAGCTGTGAAAGTTTATACCAAAAATGGTAATGCTTTGACGGATTCCTTGCTGAAATCTG 1416
||||| |||||| |||||||| ||||||||||||| |||||||||||||||| ||||| |
Sbjct 1300 GAGCTCTGAAAGCTTATACCAGAAATGGTAATGCTATGACGGATTCCTTGCTAAAATCCG 1359
Query 1417 TCTTAAAGTCCTTGAGAAGCGTGGATAGGGTTGAACAGAGCAATGAGCTGTTGAAAGAAA 1476
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1360 TCTTAAAGTCCTTGAGAAGCGTGGATAGGGTTGAACTGAGCACTGAGCTGTTGAAAGAAA 1419
Query 1477 TGAAGAGAGGAGGCTATGTTCCTAGTGGTGATATGCAGAGCATGATTGCATCAAGTCTTA 1536
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TGAAGAAAGGAGGTTATGTTCCTAGTGGTGATATGCAGAGCATGATTGCATCAAGTCTTA 1479
Query 1537 GTCGTAAGGGAAAGAAGGACGAAGCTGATGAATTTGTAGACTTTATGGAATCATCCGGAA 1596
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1480 GTCGTAAGGGAAAGAAGGATGAAGCTGATGAATTTGTAGACTTTATGGAAGCATCCGGAA 1539
Query 1597 ACAATCTAGATGACAAGGCAATGGCGTCTCTTGTTGAAGGGTATTGTGATTCCGGGAATC 1656
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1540 ATAATCTAGATGACAAGGCAATGGCGTCTCTTGTTGAAGGGTATTGTGATTCTGGGGATC 1599
Query 1657 TTGATGAAGCTTTAGTGTGTTTCGAGAAAATGGTTGGAAACACGGGAGTCTCCTATGCTG 1716
||||||||||||||||||||||||||||||||||||||||| ||| || || |||||| |
Sbjct 1600 TTGATGAAGCTTTAGTGTGTTTCGAGAAAATGGTTGGAAACGCGGCAGCCTTCTATGCCG 1659
Query 1717 ATTATTCATTTGAGAAGTTGGTTCTTGCTTATTGCAACAAGAATCAAGTAAGAGATGCAT 1776
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1660 ATTATGCATTTGAGAAGTTGGTTCTTGCTTATTGCAACAAGAATCAAGTAAGAGACGCAT 1719
Query 1777 ACAAGCTTTTGAGTGCACAAGTAAC-GAAAAATCAACTGAAACCTCGTCATAGCACATAC 1835
|||||||||||||||||||||| || ||||||||| |||||||||||||||||||| |||
Sbjct 1720 ACAAGCTTTTGAGTGCACAAGT-ACAGAAAAATCAGCTGAAACCTCGTCATAGCACGTAC 1778
Query 1836 AAAAGCTTGGTGACGAATCTGTTGACGAAGAAGATTGCAAGGGATGGTGGGTTTGAAGAA 1895
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1779 AAAATCTTGGTGACGAATCTGTTGATAAAGAAGATTGCAAGGGATGGTGGGTTTGAAGAA 1838
Query 1896 GCTTTGAGTCTTCTACCGATAATGAAAGATCACGGGTTCCCTCCTTTCATTGACCCTTTC 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 GCTTTGAGTCTTCTACCGATAATGAAAGATCACGGGTTCCCTCCTTTCATTGACCCTTTC 1898
Query 1956 ATGAGTTACTTCTCATCAACTGGAAAAAGCACTGAAGCTCTCGGTTTTTTGAAGGCTATG 2015
||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1899 ATGAGTTACTTCTCAACAACTGGAAAAAGCACAGAAGCTCTCGGTTTTTTTAAGGCTATG 1958
Query 2016 ACCTCGAATAACTTTCCATATATATCAGTGGTTCTGCGTGTATTCGAAACTATGATGAAG 2075
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1959 ACCTCGAAGAACTTTCCATCTATGTCAGTGGTTCTGCGTGTATTCGAAACTATGATGAAG 2018
Query 2076 TCTGCAAGACACAGTGAAGCACAAGATTTACTCTCTCTGTGCCCAAACTATATCCGTAAT 2135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 TCTGCAAGACACAGTGAAGCACAAGATTTACTCTCTCTGTGCCCAAACTATATCCGTAAC 2078
Query 2136 AATCCGGATGTTCTAGAACTCTTCAATACCATGAAACCCAACGAATCTGCTGTAGAAAAA 2195
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 2079 AATCCGGATGTTCTAGAACTCTTCAATACCATGAAACCTAACGAGTCTACTGTAGAAAAA 2138
Query 2196 CCTTTGGCTGCTTCTGCTTAGCTCCAGTTTTAGTTTACATTCCTTC-AAGTCTTTTTGGT 2254
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2139 CCTTTGGCTGCTTCTGCTTAGCTCCAGTTTTAGTTTACATTCCTCCCAAGTCTTTTTGGT 2198
Query 2255 TTCTGGGCATTTGATTCAAATAATTT-GGCCAGAA-TATTTCCTGCTGTTCCCTTTTGTT 2312
||||||| ||||||||| || ||||| || ||||| ||||||| ||||||||||||||||
Sbjct 2199 TTCTGGGGATTTGATTCTAA-AATTTTGGTCAGAAATATTTCCCGCTGTTCCCTTTTGTT 2257
Query 2313 TACATGTATCACTCACCAGTCACCAGTTAACTTTCTTCATCAACCTGGTGCACTGGCAAA 2372
|||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 2258 TACATGTA--AC--ACCATTCACCAGTTAACTGTCTTCATCAACCTGGTGCACTGGCAAA 2313
Query 2373 ATAATTTTAAGGTACTATGtttttttATATTCCACTTGCTTATCATCTTATGCTTCTTGG 2432
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |
Sbjct 2314 -TAATTTTAAGGTACTATGTTCTTTTATTTTCCACTTGCTTATCATCTTATGCTA-T-G- 2369
Query 2433 CTCTGCCATGGATTGTTCCGTGTATCATCATTATTTGTTAACAAGATCTGTCTGTAACT 2491
| | ||||||||||||| ||||||| | ||||||||||||||||| |||||||||
Sbjct 2370 C-C----ATGGATTGTTCCGAGTATCAT--T-ATTTGTTAACAAGATCTTTCTGTAACT 2420
> Ahg927732 jgi|Araly1|927732|scaffold_300189.1
Length=2044
Score = 1432 bits (775), Expect = 0.0
Identities = 1488/1825 (82%), Gaps = 77/1825 (4%)
Strand=Plus/Plus
Query 423 CGAAGCTTCTCGTCCGAGCCTGCGGTTGAAGAGAAATCTTCTGCTGAGGCTACCGTGATT 482
|||||||| || || ||||||||| ||||||||||| ||||||||||| | ||||||
Sbjct 228 CGAAGCTTTTCATCTGAGCCTGCGATTGAAGAGAAACCTTCTGCTGAGACGGTTGTGATT 287
Query 483 GATATTTTTAGTAGATTGAGTGGTGAGGATGAGATTAGGAAGGAGTTGGAATCGAGTGGT 542
||| ||||||| |||||||||| | ||||||| ||| |||| ||| |||| |||| || |
Sbjct 288 GATGTTTTTAGCAGATTGAGTGCTAAGGATGATATTTGGAAAGAGCTGGATTCGAATGAT 347
Query 543 GTAGTGATTAGCCAAGATTTAGCTTTGAAG-GTTTTGA-GAAAGCTCGAATCAAACCCTG 600
|| ||||||||||| || ||||| ||| || ||| ||| | || || ||||||| |||||
Sbjct 348 GTTGTGATTAGCCATGAATTAGCATTG-AGAGTTCTGAGGGAA-CTTGAATCAAGCCCTG 405
Query 601 ATGTTGCCAAAAGTTTTTTCCAGTGGATTAAGGAGGCTTCTCCT-GAGGAACT-TAGCTC 658
||||||| ||| |||||| ||||| || |||||||| |||| || |||| | |||
Sbjct 406 ATGTTGCGGGAAGGTTTTTCAAGTGGGTTTTGGAGGCTTATCCTCGA-AAACTCT-CCTC 463
Query 659 GAAGAACTATAACATGATGCTGCGGATTCTGGGTGGTAATGGACTTGTTGATGAGTTTTG 718
|||| ||||||| ||||||||| ||||| |||| |||||||||||||||||| |||||
Sbjct 464 CAAGAGTTATAACACGATGCTGCGTATTCTTGGTGTTAATGGACTTGTTGATGAATTTTG 523
Query 719 GGGGTTGGTTGATG-TGATGAAGAAGAAAGGGCATGGT-TTATCGGCTAATGTTAGAGAT 776
|| ||||||||||| | ||||||||||||||||||||| || || ||||||||||| ||
Sbjct 524 GGAGTTGGTTGATGCT-ATGAAGAAGAAAGGGCATGGTGTT-TCAGCTAATGTTAGGGAC 581
Query 777 AAAGTGGGTGACAAATTTCAGAAAGATGGGCTGGAGAGTGATTTGCTGAGGCTGAGAA-A 835
|||||||||||||| |||| ||||||||| ||||| ||||||||| |||||| | || |
Sbjct 582 AAAGTGGGTGACAAGTTTCTGAAAGATGGACTGGAAAGTGATTTGGAGAGGCTTA-AAGA 640
Query 836 GCTTTTTACTTCAGATTGTTTAGATAATTCGGCGGAGAATGTTTGCGATAGGGTGTGTAA 895
| ||||| |||||| || | | |||||||||| ||| || |||||| |||||||||||||
Sbjct 641 GATTTTTGCTTCAGGTTCTATGGATAATTCGGTGGATAAGGTTTGCAATAGGGTGTGTAA 700
Query 896 GATTGTGATGAAGGAAGAATGGGGTGATGATGTAGAGAAACGGGTAAGAGATTTGAATGT 955
||||||||||||||||| ||| ||| |||||| ||||||| | |||| |||||||| |
Sbjct 701 GATTGTGATGAAGGAAGTGTGGAGTGCTGATGTGGAGAAACAGCTAAGGGATTTGAA-GC 759
Query 956 T-GAGTTTAAGAGTGATTTAGTGAAGATGAT-TGTGGAACGTCTTGATGTTGAACCCAGG 1013
| |||||||| |||||| | ||||||||| | | ||||| ||||| || || || |||
Sbjct 760 TCGAGTTTAAAAGTGATCTGGTGAAGATGGTAT-TGGAAAAACTTGACGTGGATCCGAGG 818
Query 1014 AAAGCTTTGTTGTTCTTCCGGTGGATTGATGAGTCTGATCTCTTT-AAGCATGATGAGAA 1072
|||||||| |||||||| |||||||||||||||||| | ||| ||||||||||||||
Sbjct 819 AAAGCTTTATTGTTCTTTAGGTGGATTGATGAGTCTGG-CAGTTTTAAGCATGATGAGAA 877
Query 1073 AACCTATAATGCTATGGCTAGGGTTTT-GGGAAAAGAGAAGTTTCTTGATAGATTTCAGA 1131
|| |||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||
Sbjct 878 GACGTATAATGCTATGGCCAGGGTTTTAGGGAAA-GAGAAGTTTCTTGATAGGTTTCAGC 936
Query 1132 ACATTGTAGTAG-AAATGAGGAGTGCTGGTTATGA-AGTGGAAATAGAGACTTATGTTAG 1189
|||| ||| || |||| ||||||||||| || || | ||||||| ||||||||||||||
Sbjct 937 ACATCATAG-AGGAAATTAGGAGTGCTGGCTACGAGA-TGGAAATGGAGACTTATGTTAG 994
Query 1190 AGTTTCAACGAGGTTCTGCCAGACTAAATTGATCAAGGAAGCTGTTGACTTGTTTGAGAT 1249
|||||| | |||||||| ||||||||| |||| || ||||||||||| ||||| ||| |
Sbjct 995 GGTTTCAGCAAGGTTCTGTCAGACTAAAATGATTAAAGAAGCTGTTGAATTGTTCGAGTT 1054
Query 1250 TGCAATGGCAGGTAGTAGTAGTAGTAACAACCCCACCCCACACTGCT-TCTGTTTGTTGC 1308
||||||||| || |||| | | | || ||| ||||||||||||| | |||| |||
Sbjct 1055 TGCAATGGC-GG--GTAGCA--AC-A-CA-CCC-ACCCCACACTGCTGTA-GTTTACTGC 1104
Query 1309 TCAAGAAAATTGTCACTGCCAAGAT-TCTAGATATGGATTTGTTTTCAAGAGCTGTGAAA 1367
|||||||||||||||||||||||| | | || ||||| |||||| ||||| ||||||||
Sbjct 1105 TCAAGAAAATTGTCACTGCCAAGAAAT-TGGACATGGACTTGTTTACAAGAACTGTGAAA 1163
Query 1368 GTTTATACCAAAAATGGTAATGCTT-TGACGGATTCCTTGCTG-AA-ATCTGTCTTAAAG 1424
| |||||| ||||| || | || || ||||||| ||||| || || || || || |
Sbjct 1164 GCTTATACTGGTAATGGCAACG-TTGTGCCGGATTCAATGCTGCAACATGTG-CTCAA-G 1220
Query 1425 TCCTTGAGAAGCGTGGATAGGGTTGAACAGAGCAATGAGCTGTTGAAAGAAATGAA-GAG 1483
|| ||||||||||| |||||| ||| ||||||||||||| ||||||||| |||||| ||
Sbjct 1221 TCTTTGAGAAGCGTTGATAGGTTTGGACAGAGCAATGAGGTGTTGAAAGCAATGAACGA- 1279
Query 1484 AGGAGGCTATGTTCCTAGTGGTGATATGCAGAGCATGATTGCATCAAGTCTTAGTCGTAA 1543
||| || ||||||||||| |||||| ||||||| |||||||||| | |||||||||||
Sbjct 1280 AGGTGGTTATGTTCCTAGCGGTGATTTGCAGAGTGTGATTGCATCGGGACTTAGTCGTAA 1339
Query 1544 GGGAAAGAAGGACGAAGCTGATGAATTTGTAGA-CTTTATGGAATCATCCGGAAA-CAAT 1601
||| ||||| || ||||| | ||| |||| || |||||||||| | || ||||| || |
Sbjct 1340 GGGGAAGAAAGATGAAGCAAACGAACTTGT-GAACTTTATGGAAGCCTCTGGAAATCATT 1398
Query 1602 CTAGATGACAAGGCAATGGCGTCTCTT-GTTGAAGGGTATTGTGATTCCGG-GAATCTTG 1659
|||||||||| |||||||| ||| || ||||||||| |||||||| | || ||| |
Sbjct 1399 -TAGATGACAAAGCAATGGCATCT-TTAGTTGAAGGGCATTGTGATGCTAAAGA-TCTCG 1455
Query 1660 ATGAAGCTTTAGTGTGTTTCGAGAAAATGGTTGG-AAACACGGGAGTCTCCTATGCTGAT 1718
| ||||||| || ||||||| |||| ||| |||| ||| | ||||||||| ||||| | |
Sbjct 1456 AAGAAGCTTCAGAGTGTTTCAAGAAGATGATTGGGAAAGA-GGGAGTCTCTTATGCAGGT 1514
Query 1719 TATTCATTTGAGAAGTTGGTTCTTGCTTATTGCAACAAGAAT-CAAGTAAGAGATGCATA 1777
||| |||||||||||||||| |||||||||||||||| | | || | |||||||| |||
Sbjct 1515 TATGCATTTGAGAAGTTGGTACTTGCTTATTGCAACA-GTTTTCAGGCAAGAGATGTATA 1573
Query 1778 CAAGCTTTTGAGTGCA-CAAGT-AA-CGAAAAATCAACTGAAACCTCGTCATAGCACATA 1834
||||||||| | | | | ||| || | |||| ||| |||||||| | || || |||||
Sbjct 1574 CAAGCTTTTCACCG-AGCTAGTGAAAC-AAAA-TCAGTTGAAACCTTGGCACAGTACATA 1630
Query 1835 CAAAAGCTTGGTGACGAATCTGTTGACGAAGAAGATTGCAAGGGATGGTGGGTTTGAAGA 1894
||||| | |||||| |||||| |||| ||||||| | ||||| |||||||||||||||||
Sbjct 1631 CAAAATCATGGTGAGGAATCTATTGATGAAGAAGGTAGCAAGAGATGGTGGGTTTGAAGA 1690
Query 1895 AGCTTTGAGTCTTCTACCGATAATGA-AAGATCACGGGTTCCCTCCTTTCATTGACCCTT 1953
|||||||||||||||||| || |||| || |||||||||||||||||||| | ||||| |
Sbjct 1691 AGCTTTGAGTCTTCTACCTATGATGAGAA-ATCACGGGTTCCCTCCTTTCGTGGACCCGT 1749
Query 1954 TCATG-AGTTACTTCTC-A-TCAACTGGAAAAAGCACTGAAGCTCTCGGTTTTTTGAAGG 2010
||||| | |||||| || | | | ||||| |||| | || ||| ||| |||| ||||||
Sbjct 1750 TCATGGA-TTACTTATCGAAT-AG-TGGAACAAGCGCAGAGGCTTTCGCTTTTCTGAAGG 1806
Query 2011 CTATGACCTCGAATAACTTTCCATATATAT-CAGTGGTTCTGCGTGTATTCGAAACTATG 2069
| |||| || || || ||||||| || || || |||||||||||||||| ||| |||||
Sbjct 1807 CCGTGACTTCAAAGAAGTTTCCATCTA-ATTCAATGGTTCTGCGTGTATTTGAAGCTATG 1865
Query 2070 ATGAAGTCTGCAAGACACAGTGAAGCACAAGATTTACTCTCTCTGTGCCCAAACTATATC 2129
||||||||||||| || |||||||| || ||||| || ||| ||| ||||| ||||||
Sbjct 1866 TTGAAGTCTGCAAGGCATAGTGAAGCTCAGGATTTGCTGTCTATGTCCCCAAGTTATATC 1925
Query 2130 CGTAATAATCCGGATGTTCTAGAACTCTTCAATACCATGAAACCCAACGAATCTGC-TGT 2188
||| ||| | || ||||||||||| |||||| |||||||||| | ||| | | | |
Sbjct 1926 CGTCGCAATGCAGAAGTTCTAGAACTTTTCAATTCCATGAAACCTGATAAATGTTCCT-T 1984
Query 2189 AGAAAAACCTTTGGCTGCTTCTGCT 2213
||| ||||||||| ||||| |||||
Sbjct 1985 AGAGAAACCTTTGCCTGCTCCTGCT 2009
> Ahg908198 jgi|Araly1|908198|Al_scaffold_0002_1279
Length=537
Score = 857 bits (464), Expect = 0.0
Identities = 508/530 (96%), Gaps = 0/530 (0%)
Strand=Plus/Plus
Query 615 TTTTTCCAGTGGATTAAGGAGGCTTCTCCTGAGGAACTTAGCTCGAAGAACTATAACATG 674
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TTTTTCCAGTGGATTAAGGAGGCTTCTCCTGAGGAACTTAGCTCGAAGAATTATAACATG 60
Query 675 ATGCTGCGGATTCTGGGTGGTAATGGACTTGTTGATGAGTTTTGGGGGTTGGTTGATGTG 734
||| |||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ATGTTGCGTATTCTGGGTGTTAATGGACTTGTCGATGAGTTTTGGGGGTTGGTTGATGTG 120
Query 735 ATGAAGAAGAAAGGGCATGGTTTATCGGCTAATGTTAGAGATAAAGTGGGTGACAAATTT 794
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 121 ATGAAGAAGAAAGGACATGGCTTATCGGCTAATGTTAGAGATAAAGTAGGTGAGAAATTT 180
Query 795 CAGAAAGATGGGCTGGAGAGTGATTTGCTGAGGCTGAGAAAGCTTTTTACTTCAGATTGT 854
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 181 CAGAAAGATGGGCTGGAGAGTGATTTGGTGAGGCTGAGAAAGCTTTTTGCTTCAGATTGT 240
Query 855 TTAGATAATTCGGCGGAGAATGTTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAA 914
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAGATAATTCGGCGGAGAATGTTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAG 300
Query 915 TGGGGTGATGATGTAGAGAAACGGGTAAGAGATTTGAATGTTGAGTTTAAGAGTGATTTA 974
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 TGGGGCGATGATGTGGAGAAACGGGTGAGAGATTTGAATGTTGAGTTTAAGAGTGATTTA 360
Query 975 GTGAAGATGATTGTGGAACGTCTTGATGTTGAACCCAGGAAAGCTTTGTTGTTCTTCCGG 1034
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GTGAAGATGATTGTGGAAAGTCTTGATGTTGAACCTAGGAAAGCTTTGTTGTTCTTCCGG 420
Query 1035 TGGATTGATGAGTCTGATCTCTTTAAGCATGATGAGAAAACCTATAATGCTATGGCTAGG 1094
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TGGATTGATGAGTCTGGTCTCTTTAAGCATGATGAGAAAACTTATAATGCTATGGCTAGG 480
Query 1095 GTTTTGGGAAAAGAGAAGTTTCTTGATAGATTTCAGAACATTGTAGTAGA 1144
||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 481 GTTTTGGGAAAAGAGAAATTTCTCGATAGATTTCAGAACATCGTAGTAGA 530
> Ahg891288 jgi|Araly1|891288|Al_scaffold_0007_3274
Length=483
Score = 773 bits (418), Expect = 0.0
Identities = 458/478 (96%), Gaps = 0/478 (0%)
Strand=Plus/Plus
Query 615 TTTTTCCAGTGGATTAAGGAGGCTTCTCCTGAGGAACTTAGCTCGAAGAACTATAACATG 674
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4 TTTTTCCAGTGGATTAAGGAGGCTTCTCCTGAGGAACTTAGCTCGAAGAATTATAACATG 63
Query 675 ATGCTGCGGATTCTGGGTGGTAATGGACTTGTTGATGAGTTTTGGGGGTTGGTTGATGTG 734
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 64 ATGCTGCGTATTCTGGGTGTTAATGGACTTGTCGATGAGTTTTGGGGGTTGGTTGATGTG 123
Query 735 ATGAAGAAGAAAGGGCATGGTTTATCGGCTAATGTTAGAGATAAAGTGGGTGACAAATTT 794
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 124 ATGAAGAAGAAAGGACATGGCTTATCGGCTAATGTTAGAGATAAAGTAGGTGAGAAATTT 183
Query 795 CAGAAAGATGGGCTGGAGAGTGATTTGCTGAGGCTGAGAAAGCTTTTTACTTCAGATTGT 854
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 184 CAGAAAGATGGGCTGGAGAGTGATTTGGTGAGGCTGAGAAAGCTTTTTGCTTCAGATTGT 243
Query 855 TTAGATAATTCGGCGGAGAATGTTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAA 914
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 244 TTAGATAATTCGGCGGAGAATGTTTGTGATAGGGTGTGTAAGATTGTGATGAAGGAAGAG 303
Query 915 TGGGGTGATGATGTAGAGAAACGGGTAAGAGATTTGAATGTTGAGTTTAAGAGTGATTTA 974
|| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 304 TGTGGCGATGATGTGGAGAAACGGGTGAGAGATTTGAATGTTGAGTTTAAGAGTGATTTA 363
Query 975 GTGAAGATGATTGTGGAACGTCTTGATGTTGAACCCAGGAAAGCTTTGTTGTTCTTCCGG 1034
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 364 GTGAAGATGATTGTGGAAAGTCTTGATGTTGAACCTAGGAAAGCTTTGTTGTTCTTCCGG 423
Query 1035 TGGATTGATGAGTCTGATCTCTTTAAGCATGATGAGAAAACCTATAATGCTATGGCTA 1092
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 424 TGGATTGATGAGTCTGGTCTCTTTAAGCATGATGAGAAAACTTATAATGCTATGGCTA 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95758875930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5