BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16010.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488450 jgi|Araly1|488450|fgenesh2_kg.6__1584__AT5G16010.1 1273 0.0
> Ahg488450 jgi|Araly1|488450|fgenesh2_kg.6__1584__AT5G16010.1
Length=839
Score = 1273 bits (689), Expect = 0.0
Identities = 796/847 (94%), Gaps = 10/847 (1%)
Strand=Plus/Plus
Query 22 CTTCTTTCTTCCGAAGAGAAACCAAAAACAAAAGAAAATGGAAATGGTGACAAGTTTTGT 81
|||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 1 CTTCTTTCTTCCAAAGAGAAA-CAAAAAC---A-TCAATGGAAATGGTGACAAGTTTTGT 55
Query 82 ATATCCACCACCTCCATCAATATTGCTCAATTGTATGAGCGTCGTTGGTGTAGCTGCTCT 141
|||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct 56 ATATCCACCACCTCCATCGATATTGCTCAATTGTATGAGCGTCGTTGGTTTAGCCGCTCT 115
Query 142 GGCCAATATCGGTTGGTCTGAAATCAGAGGAAATCATCTCAAATACTCCAAATTCGGCGT 201
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 116 GGCCAAGATCGGTTGGTCTGAAGTCAGAGGAAATCATCTCAAATACTCCAAATTCGGCG- 174
Query 202 ATCATCATCATCACCACAACCACAGAAGGAGCGATTCGGCAGCATCTCAAGCCGAAATGG 261
| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 175 -T-ATCATCATCACCACAACCACAAAAGCAGCGATTCGGCAGCATCTCAAGCCGAAATGG 232
Query 262 AATGCTTTTGCTATACACACCTGCGTTTCTAGCAGCTGCGTCTTCTTTCTTCGTCGTACC 321
||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||
Sbjct 233 AATGCTTTTGCTATACACACCTGCGTTTCTAGCCGCTGCGGCTTCTTTCTTCGCCTTACC 292
Query 322 TTCTGATGATCTCAGGTTTCTTCTTCTCAAATCCGCACTTGCCCTCCATTTCTTCAAGAG 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TTCTGATGATCTCAGGTTTCTTCTTCTCAAATCCGCACTTGCCCTCCATTTCTTCAAGAG 352
Query 382 GGTATTCGAGGTTCTGTTCATACATAAATACAGTGGAGGGATGGCTATAGACTCAGCTCT 441
||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |
Sbjct 353 GGTCTTCGAGGTTCTGTTCATACATAAATACAGTGGTGGGATGGCTGTAGACTCGGCTTT 412
Query 442 CACCATAAGTAGCAGCTATTTCTCATCCACAGCATTGATGTTATACAGTCAAAATCTCAC 501
| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 413 CGTCATAAGTAGCAGCTATTTCTCATCCACGGCATTCATGTTATACAGTCAAAATCTCAC 472
Query 502 CTTGGGACTTACCGAGCCGAGTTTCGATATGAAACTCGCC-GGAGTTGTGATGTTTGTGG 560
||||||||| |||||||||||||||||||||||| ||||| ||| || | ||||||||||
Sbjct 473 CTTGGGACTGACCGAGCCGAGTTTCGATATGAAATTCGCCGGGA-TTCTCATGTTTGTGG 531
Query 561 TGGGAATTGTTGGGAATCTGTATCACCATGTTTTGCTGGCTAAGCTAAGGAAAGAAGATG 620
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 532 TGGGAATTGTTGGGAATCTGTATCACCATGTTTTGCTAGCTAAGTTAAGGAAAGAAGATG 591
Query 621 GGAAGAAAGAGTACAAGATACCAAAAGGAGGTCTCTTTGATATAATCATATGCCCTCACT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGAAGAAAGAGTACAAGATACCAAAAGGAGGTCTCTTTGATATAATCATATGCCCTCACT 651
Query 681 ATCTATTTGAGATCCTTGTGTTTTGGAGCTTCTTTCTCATCTCTCAGACCATTTATTCAT 740
|||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 652 ATCTCTTTGAGATTCTTGTGTTTTGGAGCTTCTTTATGATCTCTCAGACCATTTATTCAT 711
Query 741 TTTCTTTCGCTATGGGAACAATGCTCTATCTCATTGGTCGGAGTTATGCTACAAGAACTT 800
||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||| ||
Sbjct 712 TTTCTTTCGCTATGGGAACAATGTTGTATCTCATCGGTCGGAGTTATGCTACACGAAGTT 771
Query 801 GGTATCTTTCCAAGTTTGATGACTTCCCCAAGCATATCAAGGCTCTCATTCCCTTTGTAT 860
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 772 GGTATCTTTCCAAGTTTGATGACTTCCCCAAGCATGTCAAGGCTCTTGTTCCCTTTGTAT 831
Query 861 TCTAGAG 867
|||||||
Sbjct 832 TCTAGAG 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5