BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16020.1 Length=1926 Score E Sequences producing significant alignments: (Bits) Value Ahg488440 jgi|Araly1|488440|fgenesh2_kg.6__1574__AT5G16020.1 2957 0.0 > Ahg488440 jgi|Araly1|488440|fgenesh2_kg.6__1574__AT5G16020.1 Length=1923 Score = 2957 bits (1601), Expect = 0.0 Identities = 1773/1858 (95%), Gaps = 3/1858 (0%) Strand=Plus/Plus Query 54 cttcttcttcgtcttcttctCCGGAGTCTCTCAATTACAAGACCAAACTGCGACTAAGAA 113 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 36 CTTCTTCTTCGTCTTCTTCTCCGCAGTCTCTCAATTACAAGACCAAACTGCGACTAAGAA 95 Query 114 ATCTGTTCGAATCCTCTCGAAGATACTCATTGGCGATGACGGCAGAGTCTACGCTTGCTC 173 || ||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 96 ATTTGTTCGAATTCTCTCGAAGACACTCATCGGCGATGACGGCAGAGTCTACGCTTGCTC 155 Query 174 AGACAACGACTTCTTCTCCTTCGAGTCTAACGGATCAATCGCTTGGTCGGTACACATGAA 233 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 156 CGACAACGACTTCTTCTCCTTCGAGTCTAACGGATCAATCGCTTGGTCGGTACACATGAA 215 Query 234 TTTCAAATGTAACACCGATTTTGCCCCGGTTTACTCTGGTTTCAACCAGATGCTTCTTCT 293 |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| Sbjct 216 TTTCAAATGTAACACCGATTTTTCCCCGGTTTACTCTGGTTTCAAGCAGATGCTTGTTCT 275 Query 294 TGCAGAAAATCGTATCCTGAGAGTCATTTTTCCAAGAAACGGAACCAAATCTGAACCGGA 353 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 276 TGCAGAAAATCGTATCCTGAGAGTTATTTTCCCAAGAAACGGAACCAAATCTGAACCGGA 335 Query 354 ATTGTTCTTCGATCCTGGTGAAACGATTCTCGGTTTCGCGGTTAGCGTATCGAGTTCTTC 413 ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||| Sbjct 336 ATTGTTCTTCGATCCCGGTGAAACGATTCTTGGTTTCGCGGTTAGCATATCGAGTTATTC 395 Query 414 CGTGTACATCACGGTTAAGAATCACGGTCTCTACGCTTATAATATGTTTCGGCAGCAACT 473 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 396 CGTTTACATCACCGTTAAGAATCACGGTCTCTACGCTTATAATATGTTTCGGCAGCAACT 455 Query 474 CTGGATTGCAGAGCCTAAAATCGAACGATTCGGGTACCGACTAGGTTGTCGAAAAGATTT 533 ||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 456 CTGGATTGCAGAGCCTAAAATCGAACGATTCGGATACCGACTTGGATGTCGAAAAGATTA 515 Query 534 TGATAATTGTACATTCAATTCTCGACCAGTGATTGATTCTTGCGAAGGAAGCATCTATAT 593 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 516 TGATAACTGTACATTCAATTCTCGACCAGTGATTGATTCTTGCGAAGGGAGCATCTATAT 575 Query 594 TTCAAACAATGAAGGAGAACTCTACTCGTTATCTCTCCGTGGCACTTACTACCAATGGAT 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 TTCAAACAATGAAGGAGAACTCTACTCGTTATCTCTCCGTGGCACTTACTACCAATGGAT 635 Query 654 TCAAGATTTTAGTCTAGTGGATCGATTCTTCACTGTTACACCGGGGAATAACGGTCTAGT 713 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 636 TCAAGATTTTAGTCTAGTGGATCGATTCTTCACTGTTACACCGGGGAATAACGGTTTAGT 695 Query 714 CTACGTCGTTTTTCCTATCAAATCACTCGTTTTCGCATTAGATTCGTTTTCCGGCGACAT 773 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 696 CTACGTCGTTTTTCCTATGAAATCACTCGTTTTCGCATTAGATTCGTTTTCTGGCGACAT 755 Query 774 TCTATGGCAAAAAACCATTGGTCCATTGGCAGAAACTTCTGCTTCAGACCCTGTCATAGA 833 ||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| || Sbjct 756 TCTGTGGCAAAAAACCGTCGGTCCATTGGCAGAAACTTCTGCTTCAGACCCTGTCATTGA 815 Query 834 CTCAAACAGTTGGGCATCGATTGGTTCACTAGATGGGACATTGTACTCGTTCTCAAGAAC 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 816 CTCAAACAGTTGGGCATCGATTGGTTCACTAGATGGGACATTGTACTCGTTCTCAAGAAC 875 Query 894 AGGGGACCTTTATAAGATACCTAAAAATGCAGAAACAGATTCAGTGATCCAAATAGAGCC 953 |||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 876 AGGGGAGCTTCATAAGATACCGAAAAACGCAGAAACAGATTCAGTGATCCAAATAGAGCC 935 Query 954 ATTACTCGATTGTTCGGGCTATGCGGTTTATGTTTCTCAGACTAAATTCGAAGGAATGAT 1013 |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| || Sbjct 936 ATTACTCGATTGCTCGGGCTATGCGGTTTATGTTTCTCAGACAAAACTCGAAGGAAAAAT 995 Query 1014 CGATCGTGTCATTGAGGATTACACTTATGTGTCGGCCAAGAAACCAGAAACAGCGGTGTT 1073 |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 996 TGATCATGTTATTGAGGATTACACTTATGTGTCGGCCAAGAAACCAGAAACCGCGGTCTT 1055 Query 1074 TTCACTTGTAGTCCCAGAGACAAGATCTATCTACTGGTCTCAGAGTTATTCTGATCAAAT 1133 |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 1056 TTCACTTGTAGTTCCAGAGACAAGATCTATCTGCTGGTCTCAGAGTTACTCTGATCAAAT 1115 Query 1134 TCCGGGTTTGTTATTAGACGAAGATCTACAACATTTTGTGTTGGACGAGAGGATTGCTCT 1193 || |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1116 TCTGGGTTTGTTATTAGACGAAGATCTACAACATTTTCTGTTGGACGAGAGGATTGTTCT 1175 Query 1194 TGCGTTTGTTGCAGCCTCTAGTTCTGGAAATCCATTTCGATGTCGTTCTAAACACGAAAA 1253 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1176 TGCGTTCGTTGCAGCCTCTAGTTCTGGAAATCCATTTCGATGTCGTTCTAAACACGAAAA 1235 Query 1254 GCTGTCATCTAGTTGTTCATTTGCAGAACCAGAGCATCTTGATATCTACATTGGGAACGA 1313 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 1236 GCTATCATCTAGTTGTTCATTTTCAGAACCAGAGCATCTTGATATCTACATTGGTAACGA 1295 Query 1314 AAGAGCGATCATTTGGTTTTTACTGTTCGAGTTTGTGATTATGGTCCTCTTTGCGGCTCT 1373 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1296 AAGAGCGATAATTTGGTTTTTACTGTTCGAGTTTGTGATTATAGTCCTCTTTGCGGCTCT 1355 Query 1374 TGTGAGGTTCTGTTTTATATTCTGGAAGAAAAAGAAGCTTCAAGATCGTCCCTTCAGTAC 1433 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1356 TGTGAGGTTCTGTTTTATATTCTGGAAGAAAAAAAAGCTTCAAGATCGTCCCTTCAGTGC 1415 Query 1434 TTTCTTGGACAAGCGACGTTTGCTACACAGGAAGAGTAGAGAAATTGATAAAACGATAAC 1493 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1416 TTTCTTGGACAAGCGACGTTTGCTGCACAGGAAGAGTAGAGATATTGATAAAACGATAAC 1475 Query 1494 GAGACTTCAAAACGAATCAACGGCCAATGAATCCGCGGTTGATAAAATCGGTGATTTGAT 1553 ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| || Sbjct 1476 GAGACTTCAAAGCGAATCAACAGCCAATGAATCCACGGTTGATAAAATCGGTGATTTAAT 1535 Query 1554 TCAAAAGAGGGAAAACGTGAAAAGGAAACTCTCGTCGACCTATAGTCTTGGGAGAGACAT 1613 |||| ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| Sbjct 1536 TCAAGAGAGGGAAAACGTGAGAAGGAAACTCACGTCGACCTATAGTCTTGGAAGAGACAT 1595 Query 1614 AGATGAGTCCAAGTCTAAGTTAAAAGATTATGTTCTTCCCTTGTACGGAGGAAGTTCTAG 1673 ||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1596 AGATGAGTCAAAGTCTAAGTTAAAAGATTATGTTCTTCCCTTGTACGGCGGAGGTTCTAG 1655 Query 1674 AAGCTTCTCTTACCGAAATAGGGAAAATGAGAGTATTACGATTTTTCAAACACCAAGCGA 1733 ||||||||||| || ||||||||| ||||||||| |||||||||||||||||||| |||| Sbjct 1656 AAGCTTCTCTTTCCAAAATAGGGAGAATGAGAGTGTTACGATTTTTCAAACACCACGCGA 1715 Query 1734 TGAGTCATCCTCAGAAGAGAGCTATAGGGACGAACATTatgatgatg-t--agctgatga 1790 |||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 1716 TGAGTCATCCTCAGAAGAGAGCTACAGGGACCAACATTATGATGATGATGTAGCTGATGA 1775 Query 1791 tgaacatgatgaagatgaCTTGGACCGTAAGCAAAAGGGAAAGTTGCTTGCTCATTCAGA 1850 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1776 CGAACATGATGAAGATGACTTGGACCGTAACCAAAAAGGAAAGTTGCTTGCTCATTCAGA 1835 Query 1851 GGGTTCTTCCAATGATGGTGATGGTATTGCAAGCAGTAGAAGAAGCATATATTTGAAG 1908 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1836 GGGTTCTTCCAATGATGGTGACGGTATTGCAAGCAGTAGAAGAAGCATATATTTGAAG 1893 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72371465500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5