BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16020.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488440 jgi|Araly1|488440|fgenesh2_kg.6__1574__AT5G16020.1 2957 0.0
> Ahg488440 jgi|Araly1|488440|fgenesh2_kg.6__1574__AT5G16020.1
Length=1923
Score = 2957 bits (1601), Expect = 0.0
Identities = 1773/1858 (95%), Gaps = 3/1858 (0%)
Strand=Plus/Plus
Query 54 cttcttcttcgtcttcttctCCGGAGTCTCTCAATTACAAGACCAAACTGCGACTAAGAA 113
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 36 CTTCTTCTTCGTCTTCTTCTCCGCAGTCTCTCAATTACAAGACCAAACTGCGACTAAGAA 95
Query 114 ATCTGTTCGAATCCTCTCGAAGATACTCATTGGCGATGACGGCAGAGTCTACGCTTGCTC 173
|| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 96 ATTTGTTCGAATTCTCTCGAAGACACTCATCGGCGATGACGGCAGAGTCTACGCTTGCTC 155
Query 174 AGACAACGACTTCTTCTCCTTCGAGTCTAACGGATCAATCGCTTGGTCGGTACACATGAA 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 CGACAACGACTTCTTCTCCTTCGAGTCTAACGGATCAATCGCTTGGTCGGTACACATGAA 215
Query 234 TTTCAAATGTAACACCGATTTTGCCCCGGTTTACTCTGGTTTCAACCAGATGCTTCTTCT 293
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 216 TTTCAAATGTAACACCGATTTTTCCCCGGTTTACTCTGGTTTCAAGCAGATGCTTGTTCT 275
Query 294 TGCAGAAAATCGTATCCTGAGAGTCATTTTTCCAAGAAACGGAACCAAATCTGAACCGGA 353
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 276 TGCAGAAAATCGTATCCTGAGAGTTATTTTCCCAAGAAACGGAACCAAATCTGAACCGGA 335
Query 354 ATTGTTCTTCGATCCTGGTGAAACGATTCTCGGTTTCGCGGTTAGCGTATCGAGTTCTTC 413
||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 336 ATTGTTCTTCGATCCCGGTGAAACGATTCTTGGTTTCGCGGTTAGCATATCGAGTTATTC 395
Query 414 CGTGTACATCACGGTTAAGAATCACGGTCTCTACGCTTATAATATGTTTCGGCAGCAACT 473
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CGTTTACATCACCGTTAAGAATCACGGTCTCTACGCTTATAATATGTTTCGGCAGCAACT 455
Query 474 CTGGATTGCAGAGCCTAAAATCGAACGATTCGGGTACCGACTAGGTTGTCGAAAAGATTT 533
||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 456 CTGGATTGCAGAGCCTAAAATCGAACGATTCGGATACCGACTTGGATGTCGAAAAGATTA 515
Query 534 TGATAATTGTACATTCAATTCTCGACCAGTGATTGATTCTTGCGAAGGAAGCATCTATAT 593
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 516 TGATAACTGTACATTCAATTCTCGACCAGTGATTGATTCTTGCGAAGGGAGCATCTATAT 575
Query 594 TTCAAACAATGAAGGAGAACTCTACTCGTTATCTCTCCGTGGCACTTACTACCAATGGAT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TTCAAACAATGAAGGAGAACTCTACTCGTTATCTCTCCGTGGCACTTACTACCAATGGAT 635
Query 654 TCAAGATTTTAGTCTAGTGGATCGATTCTTCACTGTTACACCGGGGAATAACGGTCTAGT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 636 TCAAGATTTTAGTCTAGTGGATCGATTCTTCACTGTTACACCGGGGAATAACGGTTTAGT 695
Query 714 CTACGTCGTTTTTCCTATCAAATCACTCGTTTTCGCATTAGATTCGTTTTCCGGCGACAT 773
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 696 CTACGTCGTTTTTCCTATGAAATCACTCGTTTTCGCATTAGATTCGTTTTCTGGCGACAT 755
Query 774 TCTATGGCAAAAAACCATTGGTCCATTGGCAGAAACTTCTGCTTCAGACCCTGTCATAGA 833
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 756 TCTGTGGCAAAAAACCGTCGGTCCATTGGCAGAAACTTCTGCTTCAGACCCTGTCATTGA 815
Query 834 CTCAAACAGTTGGGCATCGATTGGTTCACTAGATGGGACATTGTACTCGTTCTCAAGAAC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CTCAAACAGTTGGGCATCGATTGGTTCACTAGATGGGACATTGTACTCGTTCTCAAGAAC 875
Query 894 AGGGGACCTTTATAAGATACCTAAAAATGCAGAAACAGATTCAGTGATCCAAATAGAGCC 953
|||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 876 AGGGGAGCTTCATAAGATACCGAAAAACGCAGAAACAGATTCAGTGATCCAAATAGAGCC 935
Query 954 ATTACTCGATTGTTCGGGCTATGCGGTTTATGTTTCTCAGACTAAATTCGAAGGAATGAT 1013
|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||
Sbjct 936 ATTACTCGATTGCTCGGGCTATGCGGTTTATGTTTCTCAGACAAAACTCGAAGGAAAAAT 995
Query 1014 CGATCGTGTCATTGAGGATTACACTTATGTGTCGGCCAAGAAACCAGAAACAGCGGTGTT 1073
|||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 996 TGATCATGTTATTGAGGATTACACTTATGTGTCGGCCAAGAAACCAGAAACCGCGGTCTT 1055
Query 1074 TTCACTTGTAGTCCCAGAGACAAGATCTATCTACTGGTCTCAGAGTTATTCTGATCAAAT 1133
|||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1056 TTCACTTGTAGTTCCAGAGACAAGATCTATCTGCTGGTCTCAGAGTTACTCTGATCAAAT 1115
Query 1134 TCCGGGTTTGTTATTAGACGAAGATCTACAACATTTTGTGTTGGACGAGAGGATTGCTCT 1193
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1116 TCTGGGTTTGTTATTAGACGAAGATCTACAACATTTTCTGTTGGACGAGAGGATTGTTCT 1175
Query 1194 TGCGTTTGTTGCAGCCTCTAGTTCTGGAAATCCATTTCGATGTCGTTCTAAACACGAAAA 1253
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TGCGTTCGTTGCAGCCTCTAGTTCTGGAAATCCATTTCGATGTCGTTCTAAACACGAAAA 1235
Query 1254 GCTGTCATCTAGTTGTTCATTTGCAGAACCAGAGCATCTTGATATCTACATTGGGAACGA 1313
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1236 GCTATCATCTAGTTGTTCATTTTCAGAACCAGAGCATCTTGATATCTACATTGGTAACGA 1295
Query 1314 AAGAGCGATCATTTGGTTTTTACTGTTCGAGTTTGTGATTATGGTCCTCTTTGCGGCTCT 1373
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1296 AAGAGCGATAATTTGGTTTTTACTGTTCGAGTTTGTGATTATAGTCCTCTTTGCGGCTCT 1355
Query 1374 TGTGAGGTTCTGTTTTATATTCTGGAAGAAAAAGAAGCTTCAAGATCGTCCCTTCAGTAC 1433
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1356 TGTGAGGTTCTGTTTTATATTCTGGAAGAAAAAAAAGCTTCAAGATCGTCCCTTCAGTGC 1415
Query 1434 TTTCTTGGACAAGCGACGTTTGCTACACAGGAAGAGTAGAGAAATTGATAAAACGATAAC 1493
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1416 TTTCTTGGACAAGCGACGTTTGCTGCACAGGAAGAGTAGAGATATTGATAAAACGATAAC 1475
Query 1494 GAGACTTCAAAACGAATCAACGGCCAATGAATCCGCGGTTGATAAAATCGGTGATTTGAT 1553
||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 1476 GAGACTTCAAAGCGAATCAACAGCCAATGAATCCACGGTTGATAAAATCGGTGATTTAAT 1535
Query 1554 TCAAAAGAGGGAAAACGTGAAAAGGAAACTCTCGTCGACCTATAGTCTTGGGAGAGACAT 1613
|||| ||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||
Sbjct 1536 TCAAGAGAGGGAAAACGTGAGAAGGAAACTCACGTCGACCTATAGTCTTGGAAGAGACAT 1595
Query 1614 AGATGAGTCCAAGTCTAAGTTAAAAGATTATGTTCTTCCCTTGTACGGAGGAAGTTCTAG 1673
||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1596 AGATGAGTCAAAGTCTAAGTTAAAAGATTATGTTCTTCCCTTGTACGGCGGAGGTTCTAG 1655
Query 1674 AAGCTTCTCTTACCGAAATAGGGAAAATGAGAGTATTACGATTTTTCAAACACCAAGCGA 1733
||||||||||| || ||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 1656 AAGCTTCTCTTTCCAAAATAGGGAGAATGAGAGTGTTACGATTTTTCAAACACCACGCGA 1715
Query 1734 TGAGTCATCCTCAGAAGAGAGCTATAGGGACGAACATTatgatgatg-t--agctgatga 1790
|||||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||
Sbjct 1716 TGAGTCATCCTCAGAAGAGAGCTACAGGGACCAACATTATGATGATGATGTAGCTGATGA 1775
Query 1791 tgaacatgatgaagatgaCTTGGACCGTAAGCAAAAGGGAAAGTTGCTTGCTCATTCAGA 1850
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1776 CGAACATGATGAAGATGACTTGGACCGTAACCAAAAAGGAAAGTTGCTTGCTCATTCAGA 1835
Query 1851 GGGTTCTTCCAATGATGGTGATGGTATTGCAAGCAGTAGAAGAAGCATATATTTGAAG 1908
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1836 GGGTTCTTCCAATGATGGTGACGGTATTGCAAGCAGTAGAAGAAGCATATATTTGAAG 1893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5