BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G16023.1

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941093 jgi|Araly1|941093|scaffold_601637.1                        267    2e-71


> Ahg941093 jgi|Araly1|941093|scaffold_601637.1
Length=197

 Score =  267 bits (144),  Expect = 2e-71
 Identities = 153/157 (97%), Gaps = 2/157 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAATGAAGAGGGTCATGATGAGCTC-TGCAGAGAGATCAAAGGAGAAGAAGAGATC  59
            ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct  22   ATGGAAATGAAGAAGGTCATGATGAGCTCAT-CAGAGAGATCAAAGGAGAAGAAGAGATC  80

Query  60   AATAAGTAGAAGATTGGGGAAGTATATGAAGGAACAAAAGGGAAGGATTTACATCATCAG  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81   AATAAGTAGAAGATTGGGGAAGTATATGAAGGAACAAAAGGGAAGGATTTACATCATCAG  140

Query  120  AAGATGTATGGTCATGCTCCTTTGTTCGCATGATTGA  156
            ||||||| |||||||||||||||||||||||||||||
Sbjct  141  AAGATGTGTGGTCATGCTCCTTTGTTCGCATGATTGA  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5079038713


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5