BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16050.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893515 jgi|Araly1|893515|Al_scaffold_0006_1511 1321 0.0
Ahg494127 jgi|Araly1|494127|fgenesh2_kg.7__3560__AT5G38480.1 669 0.0
Ahg476998 jgi|Araly1|476998|fgenesh2_kg.2__2128__AT1G78300.1 392 3e-108
Ahg313341 jgi|Araly1|313341|fgenesh1_pm.C_scaffold_1002121 158 1e-37
> Ahg893515 jgi|Araly1|893515|Al_scaffold_0006_1511
Length=795
Score = 1321 bits (715), Expect = 0.0
Identities = 768/794 (97%), Gaps = 2/794 (0%)
Strand=Plus/Plus
Query 107 GTCCCGGGAAGAGAATGTGTACTTGGCCAAGTTAGCCGAGCAAGCTGAGCGTTACGAGGA 166
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3 GTCCCGGGAAGAGAATGTGTACTTGGCCAAGTTAGCCGAGCAGGCTGAGCGTTACGAGGA 62
Query 167 AATGGTTGAGTTCATGGAGAAAGTTGCAAAGACCGTGGAGACCGAGGAACTTACTGTTGA 226
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 63 AATGGTTGAGTTCATGGAGAAAGTTGCTAAGACCGTGGACACTGAGGAACTTACTGTTGA 122
Query 227 AGAGAGGAATCTCTTGTCTGTTGCTTACAAGAACGTGATTGGTGCTAGGAGAGCTTCTTG 286
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 123 AGAGAGGAATCTCTTGTCTGTTGCGTATAAGAACGTGATTGGTGCTAGGAGGGCTTCTTG 182
Query 287 GAGGATTATCTCTTCCATTGAGCAGAAGGAAGATAGCAGGGGCAACAGTGATCATGTTTC 346
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 183 GAGGATTATCTCTTCCATTGAGCAGAAGGAAGATAGCAGGGGTAACAGTGATCACGTTTC 242
Query 347 GATTATCAAGGATTACAGAGGCAAGATTGAAACTGAGCTCAGCAAGATTTGTGATGGCAT 406
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 243 GATTATCAAGGATTACAGAGGCAAGATTGAAACTGAGCTCAGCAAGATTTGCGATGGCAT 302
Query 407 TTTGAACCTTCTTGAGGCTCATCTCATTCCTGCTGCTTCTTTGGCTGAGTCCAAAGTTTT 466
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 303 TTTGAACCTTCTCGAGGCTCATCTCATTCCTGCTGCTTCCTTGGCTGAGTCCAAAGTTTT 362
Query 467 TTACCTGAAGATGAAGGGAGATTATCATCGGTACCTTGCTGAATTCAAGACTGGTGCTGA 526
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 363 TTACCTCAAGATGAAGGGAGATTACCATCGGTACCTTGCTGAATTCAAGACTGGTGCTGA 422
Query 527 GAGGAAAGAAGCTGCTGAGAGCACTCTTGTTGCCTACAAGTCTGCTCAGGATATTGCTCT 586
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 423 GAGGAAAGAAGCTGCTGAGAGTACTCTTGTGGCCTACAAGTCTGCTCAGGATATTGCTCT 482
Query 587 TGCTGATC-TGGCTCCCACTCACCCAATCAGACTGGGGCTTGCTCTTAACTTCTCTGTTT 645
|||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 483 TGCTGA-CTTGGCTCCCACTCACCCGATCAGACTGGGGCTTGCTCTTAACTTCTCTGTTT 541
Query 646 TCTACTATGAGATTCTCAACTCATCTGATCGTGCGTGTAGTCTCGCAAAGCAGGCTTTTG 705
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 542 TCTACTATGAGATTCTCAACTCATCTGATCGTGCATGTAGTCTCGCAAAGCAGGCTTTTG 601
Query 706 ATGAGGCAATCTCGGAGCTAGACACATTGGGAGAGGAATCATACAAGGACAGTACATTGA 765
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 602 ATGAGGCAATCTCTGAGCTAGATACATTGGGAGAGGAATCATACAAGGACAGTACATTGA 661
Query 766 TCATGCAGCTTCTCCGTGACAATCTCACCCTCTGGACTTCTGACCTCAATGACGAAGCTG 825
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 662 TCATGCAGCTTCTCCGTGATAATCTCACCCTCTGGACTTCTGACCTCAATGACGAAACTG 721
Query 826 GTGATGATATCAAGGAAGCCCCGAAAGAGGTGCAGAAAGTTGATGAACAAGCCCAACCAC 885
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 722 GTGATGATATCAAGGAAGCCCCGAAAGAGGTGCAGAAAGATGAGGAACAAGCCCAACCAC 781
Query 886 CACCTTCGCAGTGA 899
||||||||||||||
Sbjct 782 CACCTTCGCAGTGA 795
> Ahg494127 jgi|Araly1|494127|fgenesh2_kg.7__3560__AT5G38480.1
Length=1063
Score = 669 bits (362), Expect = 0.0
Identities = 635/765 (83%), Gaps = 26/765 (3%)
Strand=Plus/Plus
Query 90 AAGATGTCTTCTGATTCGTCCCGGGAAGAGAATGTGTACTTGGCCAAGTTAGCCGAGCAA 149
|||||||| |||| | || ||||||||||||| ||| |||| || |||||||| |||
Sbjct 101 AAGATGTCGACTGAAGCATCAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAA 160
Query 150 GCTGAGCGTTACGAGGAAATGGTTGAGTTCATGGAGAAAGTTGC-AAAGACCGTGGA-GA 207
||||| ||||| || ||||||||||| ||||||||||||||||| ||| || || || |
Sbjct 161 GCTGAACGTTATGAAGAAATGGTTGAATTCATGGAGAAAGTTGCGAAA-ACTGTTGATG- 218
Query 208 CCGAGGAACT-TACTGTTGAAGAGAGGAATC-TCTTGTCTGTTGCTTACAAGAACGTGAT 265
|| ||||| | |||||||||||||||| | || | |||||||||||||||||||||||
Sbjct 219 TTGAAGAACTCT-CTGTTGAAGAGAGGAACCTTC-TCTCTGTTGCTTACAAGAACGTGAT 276
Query 266 TGGTGCTAGGAGAGCTTCTTGGAGGATTATCTCTTCCATTGAGCAGAAGGAAGATAGC-A 324
||| || || |||||||| ||||| || || ||||| ||||||||||| ||||| ||| |
Sbjct 277 TGGAGCGAGAAGAGCTTCGTGGAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAA 336
Query 325 GGGGCAAC-AGTGATCATGTTTCGATTATCAAGGATTACAGAGGCAAGATTGAAACTGAG 383
||| ||| || ||||||||| | ||||||||||||||||| || ||||| ||||| |||
Sbjct 337 AGGG-AACGAG-GATCATGTTGCTATTATCAAGGATTACAGGGGAAAGATCGAAACCGAG 394
Query 384 CTCAGCAAGATTTGTGATGGCATTTTGAACCTTCTTGAGGCTCATCTCATTCC-TGCTGC 442
|| ||||| || |||||||| |||||||| ||||||| |||||||| ||||| | ||||
Sbjct 395 CTTAGCAAAATCTGTGATGGGATTTTGAATGTTCTTGAAGCTCATCTTATTCCAT-CTGC 453
Query 443 TTC-TTTGGCTGAGTCCAAAGTTTTTTACCTGAAGATGAAGGGAGATTATCATCGGTACC 501
||| | ||||| || ||||| |||||||| || |||||||||||||||||| |||| |
Sbjct 454 TTCACCT-GCTGAATCTAAAGTGTTTTACCTAAAAATGAAGGGAGATTATCATAGGTATC 512
Query 502 TTGCTGAATTCAAGACTGGTGCTGAGAGGAAAGAAGCTGCTGAGAGCACTCTTG-TTGCC 560
|||| || || ||| |||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 513 TTGCCGAGTTTAAGGCTGGTGCTGAGAGGAAAGAAGCTGCTGAAAGCACT-TTGGTTGCT 571
Query 561 TACAAGTCTGCT-CAGGATATTGCT-CTTGCTGA-TCTGGCTCCCACTCACCCAATCAGA 617
|||||||||||| | | | ||||| || ||||| | | |||||||||||||| || ||
Sbjct 572 TACAAGTCTGCTTCCG-ACATTGCCACT-GCTGAGT-TAGCTCCCACTCACCCGATAAGG 628
Query 618 CTGGGGCTTGCTCTTAACTTCTCTGT-TTTCTACTATGAGATTCTCAACTCATCTGATCG 676
|| || ||||| || ||||||||||| ||| |||||||| || |||||||| |||||||
Sbjct 629 CTTGGTCTTGCCCTCAACTTCTCTGTGTTT-TACTATGAAATCCTCAACTCGCCTGATCG 687
Query 677 TGCGTGTAGTCTCGCAAAGCAGGCTTTTGATGAGGCAATCTCGGAGCTAGACACATTGGG 736
||| || || |||||||||||||| |||||||| || ||| | ||| | || ||||||||
Sbjct 688 TGCTTGCAGCCTCGCAAAGCAGGCATTTGATGATGCTATCGCTGAGTTGGATACATTGGG 747
Query 737 AGAGGAATCATACAAGGACAGTACATTGATCATGCAGCTTCTCCGTGACAATCTCACCCT 796
|||||||||||||||||||||||| |||| ||||||||||| | ||||||||||| ||
Sbjct 748 TGAGGAATCATACAAGGACAGTACACTGATTATGCAGCTTCTTAGAGACAATCTCACTCT 807
Query 797 CTGGACTTCTGACCTCAATGACGAAGCTGGTGATGATATCAAGGA 841
||||||||| || | | ||||||||| || ||||| ||||||||
Sbjct 808 CTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATCAAGGA 852
> Ahg476998 jgi|Araly1|476998|fgenesh2_kg.2__2128__AT1G78300.1
Length=1201
Score = 392 bits (212), Expect = 3e-108
Identities = 575/744 (77%), Gaps = 50/744 (7%)
Strand=Plus/Plus
Query 126 TACTTGGCCAAGTTAGCCGAGCAAGCTGAGCGTTACGAGGAAATGGTTGAGTTCATGGAG 185
||| |||| ||| | || |||||||| ||| | ||||| || ||||||||||| ||||||
Sbjct 184 TACATGGCTAAGCTCGCGGAGCAAGCGGAGAGGTACGAAGAGATGGTTGAGTTTATGGAG 243
Query 186 AAAGT-TGCAAAGACCGTGGA-GACCGAGGAACTTACTGTTGAAGAGAGGAATC-TCTTG 242
||||| | | | |||| || | ||| ||||| || ||||||||| | |||| || |
Sbjct 244 AAAGTCTCCGCCG-CCGTCGATG-GCGATGAACTCACCGTTGAAGAGCGAAATCTTC-TC 300
Query 243 TCTGTTGCTTACAAGAACGTGATTGGTGCTAGGAGAGCTTCTTGGAGGATTATCTCTTCC 302
||||| |||||||||||||||||||||||| | | || || ||| | ||||| || ||
Sbjct 301 TCTGTCGCTTACAAGAACGTGATTGGTGCTCGCCGTGCCTCGTGGCGTATTATTTCATCG 360
Query 303 ATTGAGCAGAAGGAAGATAG-CAGGGGCAACAG-TGATCATGTTTCGATTATCAAG-GAT 359
|| |||||||| ||||| || | | || ||| | ||| || || || | ||| | |||
Sbjct 361 ATCGAGCAGAAAGAAGAGAGTC-GCGGTAAC-GATGACCACGTCACGGTGATC-CGTGAT 417
Query 360 TACAGAGGC-AAGATTGAAACTGAGCTCAGCAAG-ATTTGTGATGGCATTTTGAACCTT- 416
||||| | | ||||| || || || ||| | | || || || || || | || ||
Sbjct 418 TACAG-GTCTAAGATCGAGACGGAACTC-TCTGGAATCTGCGACGGAATCCTCAA-GTTG 474
Query 417 CTTGAGGCTC-A-TCTCATTCCTGCTGCTTCTT-TGGCTGAGTCCAAAGTTTTTTACCTG 473
||||| ||| | ||||| ||||| ||| ||| ||| ||| ||||| || |||||||||
Sbjct 475 CTTGA--CTCTAGACTCATCCCTGCCGCTGCTTCTGG-TGATTCCAAGGTCTTTTACCTG 531
Query 474 AAGATGAAGGGAGATTATCATC-GGTACCTTG-CTGAATTCAAGACTGGTGCT-GAGAGG 530
|||||||||||||||||||| | ||||| ||| |||| |||||||||||| | ||||||
Sbjct 532 AAGATGAAGGGAGATTATCA-CAGGTAC-TTGGCTGAGTTCAAGACTGGT-CAAGAGAGG 588
Query 531 AAAGAAGCTGCTGAG-AGCACTCT-TGTTGCCTACAAGTCTGCTCAGGATATTGCTCTTG 588
||||| || ||||| | |||||| | || ||||| |||||||||||||||||| ||
Sbjct 589 AAAGACGCCGCTGAACA-CACTCTCTCC-GCTTACAAATCTGCTCAGGATATTGCTAATG 646
Query 589 CTGATCTGGCTCCCACTCACCCAATCAGACTGGGGCTTGCTCTT-AACTTCTCTGTTTTC 647
| || || ||||| |||||||||||| | || || ||||| || ||||||||||| |||
Sbjct 647 CAGAGCTTGCTCCTACTCACCCAATCCGTCTTGGTCTTGCA-TTGAACTTCTCTGTGTTC 705
Query 648 TACTATGAGATTCTCAACTCATC-TGATCGTGCGTGTAGTCTCGC-AAAGCAGGCTTTTG 705
||||| ||||| ||||| || || ||||||||| || | ||||| ||| ||||| ||||
Sbjct 706 TACTACGAGATCCTCAATTC-TCCTGATCGTGCTTGCAACCTCGCCAAA-CAGGCCTTTG 763
Query 706 ATGAGGCAATCT-CGGAGCTAGACACA-TTGG-GAGAGGAATCATACAAGGACAGTACAT 762
|||| || || | | ||| | ||||| |||| || || | |||||||| |||||||| |
Sbjct 764 ATGAAGCGAT-TGCAGAGTTGGACACTCTTGGTGA-AG-AGTCATACAAAGACAGTACCT 820
Query 763 TGATCATGCAGCTTCTCCGTGACAATCTCACCCTCTGGACTTCTGACCT-CAATGACGAA 821
|||||||||||||||| |||||||| ||||| |||||||| || || | || || ||
Sbjct 821 TGATCATGCAGCTTCTTCGTGACAACCTCACTCTCTGGACATCCGATATGCAG-GATGAT 879
Query 822 GCTG-GTGATGATATCAAGGAAGC 844
|||| | ||||| |||||||||||
Sbjct 880 GCTGCG-GATGAAATCAAGGAAGC 902
> Ahg313341 jgi|Araly1|313341|fgenesh1_pm.C_scaffold_1002121
Length=861
Score = 158 bits (85), Expect = 1e-37
Identities = 501/694 (72%), Gaps = 60/694 (9%)
Strand=Plus/Plus
Query 142 CCGAGCAAGCTGAGCGTTACGAGGAAATGGTTGAGTTC-ATGGAGAAAGTTGCAAAGACC 200
|||| ||||| || || ||||| || ||||| ||| | ||| ||||||| || |||
Sbjct 59 CCGAACAAGCCGAACGATACGACGAGATGGTGGAG-ACGATGAAGAAAGTGGCGAAG--- 114
Query 201 GTGGAGACCGAGGAACTTACTGTTGAAGAGAGGAATCTCTTGTCTGTTGCTTACAAGAAC 260
||| | | ||| | || || || |||||||||||||| ||||| |||| ||||||||||
Sbjct 115 GTGAATAGCGA-G--CTGACGGTGGAAGAGAGGAATCTGTTGTCAGTTGGTTACAAGAAC 171
Query 261 GTGATTGGTGCTAGGAGAGCTTCTTGGAGGATTATCTCTTCCATTGAGCAGAAGGAAGA- 319
|| || || || || |||||||| |||||||| || || || || |||||||| |||||
Sbjct 172 GTAATCGGAGCAAGAAGAGCTTCGTGGAGGATAATGTCATCGATCGAGCAGAAAGAAGAG 231
Query 320 TAGCAGGGGCAACAGTG-ATC--ATGTTTCGA-TTATCAAGGATTA-CAGAGGCAAGATT 374
| || ||| | | || ||| ||| | | |||||||| ||| | | ||| ||
Sbjct 232 T-CCAAAGGC-A-A-TGAATCAAATG-TGAAACATATCAAGGGTTATC-GCCAAAAGGTT 285
Query 375 GAA-ACTGAGCTCAGC-AAGATTTGTGATGGCATTTTGAACCTTC-TTGAGGC-TCATCT 430
||| | ||||||| || || ||||| | | |||| | || || |||| | |||||
Sbjct 286 GAAGA-TGAGCTC-GCTAACATTTGCCAAGACATTCT-CTCCATCATTGA-TCAGCATCT 341
Query 431 CATTCCTGC-TGCT-TCTTTGGCTG-AGTCCAAAGTTTTTTACCT-GAAGATGAAGGGAG 486
||| ||| | ||| || || | || | | || || || || |||||||| ||||
Sbjct 342 CATCCCT-CACGCTACCTCAGG-GGAAG-CTACCGTCTTCTA-CTACAAGATGAAAGGAG 397
Query 487 ATTATCATCGGTACCTT-GCTGAATTCAAGACTGGTGC-TGAGAGGAAAGAAGCTGCTG- 543
||||| | || || ||| ||||| || ||||| | || |||||||| ||||||||||
Sbjct 398 ATTATTACCGTTA-CTTGGCTGAGTTTAAGAC-CGAGCAAGAGAGGAAGGAAGCTGCTGA 455
Query 544 AGAGCACTCTTGTTGCCTACAAGTCTGCTCAGGATATTGCT-CTTG--CTGATCTGGCTC 600
| || | ||| | ||| || ||| || | | ||| | | |||| || ||
Sbjct 456 ACAG-TCGCTTAAAGGCTATGAGGCTG--CAACACA-AGCTGCAAGCACTGAGCTTCCTT 511
Query 601 CCACTCA-CCCAATCAGACTGGGGCTTGCTCTTAACTTCTCTGTTTTCTACTATGAGATT 659
| || || || | || | || || ||||||||||||||||||||||||||||| |||||
Sbjct 512 CGACCCATCCGATTC-GTCTTGGCCTTGCTCTTAACTTCTCTGTTTTCTACTACGAGAT- 569
Query 660 C-TCAACTCATC-TGATCGTGCGTGT-AGTCTCGCAAAGCAGGCTTTTGATGAGGCAATC 716
| | ||||| || ||| | || || | | | || ||||| || || |||||||| ||
Sbjct 570 CATGAACTC-TCCTGAAAGAGCTTGCCATT-TGGCGAAGCAAGCCTTCGATGAGGCGAT- 626
Query 717 T-CGGAGCTAGACACAT-TGGGAGAGGAATCATACAAGGACAGTACATTGATCATGCAGC 774
| ||||| |||| || | | | ||||| || ||||||||||| || |||||||||||||
Sbjct 627 TGCGGAGTTAGATAC-TCTAAGTGAGGAGTCGTACAAGGACAGCACTTTGATCATGCAGC 685
Query 775 TTCTCCGTGACAATCTCACCCTCTGGACTTCTGA 808
| || | ||||| ||||||||||||||||||||
Sbjct 686 TCCTGAGAGACAACCTCACCCTCTGGACTTCTGA 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5