BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G16060.1

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488456 jgi|Araly1|488456|fgenesh2_kg.6__1590__AT5G16060.1         553    6e-157


> Ahg488456 jgi|Araly1|488456|fgenesh2_kg.6__1590__AT5G16060.1
Length=452

 Score =  553 bits (299),  Expect = 6e-157
 Identities = 366/397 (92%), Gaps = 9/397 (2%)
 Strand=Plus/Plus

Query  1    TTGATCGGAGAAGGCCGGAAAAGCTCGAAGGTCCGTCGTCAATGGGTAGCTATGTGGAGC  60
            |||||||||||| ||||||||||||||||||| |  || ||||||| |||||||||||||
Sbjct  1    TTGATCGGAGAAAGCCGGAAAAGCTCGAAGGTTC--CGACAATGGGGAGCTATGTGGAGC  58

Query  61   AAGCTCGTGAAAATCACGTGAAGAAGAAGGTCGAAGAAGCGCTGCGTAGCAAGATGAAGG  120
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  59   AAGCTCGTGAGAATCACGTGAAGAAGAAGGTCGAAGAAGCGCTGCGTAGCAAGATGAAAG  118

Query  121  CAAAGGCATTAATGGAATGTGATCAGTACGTCTCCAAGTATGCTCAATGCGCAACAGGAA  180
            |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  119  CAAAGGCATTGATGGAATGTGATCAGTATGTCTCAAAGTATGCTCAATGCGCAACAGGAA  178

Query  181  GAACTTTTTCTGTGGTATGGACATGTCGTAAGCAAGCTAGGGAGCTCAACACTTGCCTCC  240
            |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct  179  GAACGTTTTCTGTGGTATGGACATGTCGTAAGCAAGCTAAAGAGCTCAACACTTGCCTCC  238

Query  241  ATCAATTCACCAATGACAATGTCTTGGAGGAAATGAAGAGAGCGTATATGGTTCAAGAAG  300
            ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||
Sbjct  239  ATCAATTCACCAATGACAATGTCTTGGAGGAAATGAAGAGAGAATATATGCTTCAAGAAG  298

Query  301  AGGGTAAAGTCTCAG-CCTCGGCCATATAGATGTTTGTTGAACAAAAGATTTGAGTACG-  358
            ||||||||||||| | ||||||||||||| || |||||||||||||||||||| || || 
Sbjct  299  AGGGTAAAGTCTC-GTCCTCGGCCATATAAATTTTTGTTGAACAAAAGATTTGTGT-CGG  356

Query  359  ACCAATATAATGTC-CTCGCTTTGTTTCTTGTTCATT  394
            |||||| ||  ||  |||  |||||||||||||||||
Sbjct  357  ACCAATGTAGCGTGACTC--TTTGTTTCTTGTTCATT  391


 Score =  102 bits (55),  Expect = 2e-21
 Identities = 59/61 (97%), Gaps = 0/61 (0%)
 Strand=Plus/Plus

Query  424  TAAACTGTGGCCTTTCTTAAATATGGGTGTATTCACTAAATCTAGAGATCAGATTCAAAT  483
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  391  TAAACTGTGGCCTTTTTTAAATAAGGGTGTATTCACTAAATCTAGAGATCAGATTCAAAT  450

Query  484  A  484
            |
Sbjct  451  A  451



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107995403


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5