BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G16090.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326056 jgi|Araly1|326056|fgenesh1_pm.C_scaffold_6001276           172    2e-42


> Ahg326056 jgi|Araly1|326056|fgenesh1_pm.C_scaffold_6001276
Length=405

 Score =  172 bits (93),  Expect = 2e-42
 Identities = 154/180 (86%), Gaps = 17/180 (9%)
 Strand=Plus/Plus

Query  1    ATGAAGATCATTGTCAAAACATTGAAGGGGATTCGCTTCGAGATCGAAGTAAAACCCAAC  60
            |||||||| ||||| ||||| |||||||||| |||||||||||||||||| |||||||||
Sbjct  1    ATGAAGATAATTGTAAAAACTTTGAAGGGGACTCGCTTCGAGATCGAAGTTAAACCCAAC  60

Query  61   GATTCGGTTGCTGAAGTGAAGAAGAACATAGAGACTGTGATGGGAGCTAGTGAATATCCT  120
            ||     || |         ||||||||||||||||||  ||||||||||||||||||||
Sbjct  61   GA-----TT-C---------GAAGAACATAGAGACTGTTCTGGGAGCTAGTGAATATCCT  105

Query  121  GCTGCACAACAAATACTTATTCATAAAAGGGAAAA-GCTTAGAGATGAAACAACAATGGA  179
            |||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||||
Sbjct  106  GCTGCACAACAAATTCTTATTCATAAA-GGGAAAAAGCTTAGAGATGAAGCAACAATGGA  164



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5