BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16100.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326057 jgi|Araly1|326057|fgenesh1_pm.C_scaffold_6001277 913 0.0
> Ahg326057 jgi|Araly1|326057|fgenesh1_pm.C_scaffold_6001277
Length=1047
Score = 913 bits (494), Expect = 0.0
Identities = 782/921 (85%), Gaps = 19/921 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGGTGATGATCCAAAATCATCCGCTCCTAAAGACGATGGGTATGAAGATCCCTAC 60
|||||||| |||||||| || |||||||||| |||||| | ||||||||||||| ||||
Sbjct 1 ATGGCGGGCGATGATCCTAAGCCATCCGCTCCAAAAGACAACGGGTATGAAGATCTCTAC 60
Query 61 ATTAATGATCCATTTGATGGGTTCGGGCCCTTTACGGACGAAGATCTAATTAATGTAATG 120
||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 61 ---AATGACCCATTTGATGGGTTCGGGGGATTTACGGACGAAGATCTAATAAATGTTATG 117
Query 121 GCCGACAT-AAACCCAAACTTAATGGACATGTCTTTCACGGAACACACGCCTCCGT-CTG 178
| ||| | || || || ||| ||||| ||||||||||||||||||||| |||| | |||
Sbjct 118 TCAGACTTGAATCCTAATCTT-ATGGATATGTCTTTCACGGAACACACGTCTCC-TCCTG 175
Query 179 TGTTACCTACATTACCATCGGACGTGGACGAAACTCATTTGTTTCATGAACTCGATCTTT 238
|||| ||||| ||||||| || |||||||| ||||| || |||||||| | ||||| |
Sbjct 176 TGTTTCCTACCTTACCATTAGATGTGGACGACACTCAGTTACTTCATGAATTAGATCTCT 235
Query 239 CGATCAGTAACTACGAC-TCCAAAGATGAGTTCGAGACACTGTCTTTCGTTGAAGACGGT 297
|||||| ||||||||| | ||| |||||||| || | ||||||| ||| || || |||
Sbjct 236 CGATCACCAACTACGACAT-CAAGGATGAGTTTGATAGTCTGTCTTGCGTGGATGATGGT 294
Query 298 TTCACCATCCCCTTGGATATGT-TCGAACAACCTAATGATGAACAT-AACGACAACAATG 355
|| |||||| | ||||| |||| | || |||||||||||||| | | |||||||||||||
Sbjct 295 TTTACCATCTCGTTGGACATGTAT-GACCAACCTAATGATGATC-TGAACGACAACAATG 352
Query 356 ATGTCCCAGGAGAGATTGGTAATGATAATGGTAAAAACGTTGTTGGTGATAGTACTCGAC 415
|||||||||||||||||||||||||||||||||||| | |||||| ||| ||||| |||
Sbjct 353 ATGTCCCAGGAGAGATTGGTAATGATAATGGTAAAAGCATTGTTGATGAAAGTACAAGAC 412
Query 416 TTGAATTGAGCACTAGAGTTTTTGGTGGTGCTAATGGTCTAGACTTTGAAATTGGTGGTT 475
||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 413 TTGAAGTGAGCACTCGAGTTTTCGGTGGTGCTAATGGTCCAGACTTTGAAATTGGTGGTT 472
Query 476 CAGCAACAATGCCTGTCCCGGTTACAACGACAATCTCTGATGGAGTTCACGCATGCAATT 535
|| ||||||| ||||||||||||||| |||||||||||||||||||| ||| |||| ||
Sbjct 473 CATCAACAATACCTGTCCCGGTTACACCGACAATCTCTGATGGAGTTTACGTATGCGGTT 532
Query 536 GTTGCAGATTGCTTCGAGAATTAGTCCATCTCAAGGAAGGGGAGGAAAGGAGTAAGCTTG 595
|||| | | ||||||||||||||||||| |||||| ||| || |||| ||| || |||
Sbjct 533 GTTGTAAAATGCTTCGAGAATTAGTCCACCTCAAGAAAGAGGTGGAACGGAATACTCTTA 592
Query 596 ACATCTATGGAGGAATTGGTTTCATTTGCCATGCTATTCT-CTTGATTCAACTGTTGGCT 654
|||||| |||||| ||||||||| |||||||||| |||| || || | |||| ||| |
Sbjct 593 ACATCTTTGGAGGGATTGGTTTCTTTTGCCATGCGGTTCTTCT-GACTGAACTCTTGTTT 651
Query 655 CCTGATTCTATGCAACGTCAACCTCTAATATTTCATCTGCA-GCATTTAACGATGGAGGA 713
|||||||||||| || ||||||||| || | ||||||| | | ||| ||||||||||||
Sbjct 652 CCTGATTCTATGGAATGTCAACCTCAAACAATTCATCTAAAAGAATT-AACGATGGAGGA 710
Query 714 AGTTAAAAAGTTCATAGAAGATTATTGCTACCAGAGAGTAGCAAATGGTTTATCACTTTT 773
||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||| |
Sbjct 711 AGTTAAAAAGTTCATAGAAGATTATTGCTCCCATAGAGTAGCAAGTGGGTTATCACTTGT 770
Query 774 GCAAGACACTAATGCTGCTTTTTATCAAGCAATGAGTGCCAACTCCATCTTTAACCAGCC 833
|| |||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| |
Sbjct 771 GCGAGACACTAATGCTGCTTTCTATCAAGCAATGAGTGCCAACTTCATCTCTAACCAGTC 830
Query 834 ACCACCTATGTTGACATTACCATCAAGCACTGATGTTCCACTGTCTTTGCTTTCGCCT-A 892
| | ||||||||||| |||||||| ||||||||||||| |||||||| |||||||| |
Sbjct 831 AACGTCTATGTTGACAATACCATCACCCACTGATGTTCCAATGTCTTTGGTTTCGCCTGA 890
Query 893 ACGAAGATCACGATGTTCCAC 913
| |||| || | ||||||||
Sbjct 891 A-GAAGCTCGCCCTGTTCCAC 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5