BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16110.1
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488459 jgi|Araly1|488459|fgenesh2_kg.6__1593__AT5G16110.1 1738 0.0
Ahg477491 jgi|Araly1|477491|fgenesh2_kg.3__192__AT3G02555.1 97.1 3e-19
> Ahg488459 jgi|Araly1|488459|fgenesh2_kg.6__1593__AT5G16110.1
Length=1356
Score = 1738 bits (941), Expect = 0.0
Identities = 1277/1422 (90%), Gaps = 91/1422 (6%)
Strand=Plus/Plus
Query 36 AAAAATTAGAAATGCATGAAAATTAAGCTGTCCACAAATATCACTATTACGACGCCGAGA 95
|||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 1 AAAAATAATAAATGCATGAAAATTAAGCTGTCCACAAATATCACTAATACGACGGCGATA 60
Query 96 AAAAGCAACTTTCCAGTTTGATATACTATTTTGTTTTTAAAGCAAAAATTCCCAATTCCA 155
|||||| | | || | | | | | ||||||||||||| ||| ||||| |
Sbjct 61 AAAAGC-A------A--TT--T-T-CCA----G--TTTAAAGCAAAAAATCCTAATTCAA 101
Query 156 -CGAAACGTCGTCGTTTCATGTTGTCTTCAACCTCACCCACACTTTCTTCGGTCTCATCC 214
| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 102 CCAAAACGTCATCGTTTCAAGTTGTCTTCAACCTCACCCACAC-TTCTTCGGTCTCATCC 160
Query 215 TTTTATAAAATCCCCATTTCCTCTAACGATTTTTCGCctctctctctctctctctctctc 274
|||||||||||||| ||||||||| ||||||||||| | |||||||||||||
Sbjct 161 TTTTATAAAATCCCTATTTCCTCTGACGATTTTTCG---------C-CTCTCTCTCTCTC 210
Query 275 tctctctttcttctatcttctccgtcatcgttctctctctctcctctcCCGGAGATTTTT 334
|||||| || || || ||| | || || |||||||| || || | ||||||||||||
Sbjct 211 TCTCTC--TC-TC--TC-TCT-C-TC-TC--TCTCTCTC-CT-CT-T-CCGGAGATTTTT 255
Query 335 ACTCAGGCGTTCTTCTGTGGATCAGAGGTGAAAAAGATGAATCATTGCAACCTTCAGCAG 394
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 256 ACTCAGGCGTTCTTCTGTGGATCAAAGGTGAAGAAGATGAATCATTGCAACCTTCAGCAG 315
Query 395 AACGCCTTCATGTCTCGTGAGGAGATGATGGGATTTGACCGTAAGGATCTTGTTGTTTGT 454
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 316 AACGCCTTCATGTCTCGTGAGGAGATGATGGGATTTGATCGCAAGGATCTTGTTGTTTGT 375
Query 455 CCTAAGCCTCGACGTGTTGGTTTACTCGCCAACAACGTTATTCGTCCTCTTAGATTACAT 514
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 376 CCTAAGCCTCGACGTGTTGGTTTACTCGCCAACAACGTCATTCGTCCTCTCAGATTACAT 435
Query 515 ATGAGTCAAGCTGC-AGCCGACTTGTGTGATTCTAAAGCTGGTGCTGAGCTTTTGGAAAT 573
|||||||||||||| | | || ||||||||||||||||||||||| ||||||||||||||
Sbjct 436 ATGAGTCAAGCTGCTA-CTGATTTGTGTGATTCTAAAGCTGGTGCAGAGCTTTTGGAAAT 494
Query 574 CATTCGTAGAAAGGAGGATAATGGAACAATAGGGCAGTTACTATCATCATCCCCACCGTA 633
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 495 CATTCGTAGAAAGGAGGATAATGGAACAATAGGGCAGTTACTATCATCATCGCCACCATA 554
Query 634 TTTTCCCGGTTCACCACCGAGTAGAGCGGCGAACCCATTAGCCCAAGATGCTCGTTTTCG 693
|||||| || |||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 555 TTTTCCTGGCTCACCACCCAGCAGAGCGGCGAACCCATTAGCCCAAGATGCTCGCTTTCG 614
Query 694 AGATGAGAAACTCAATCCAATCTCACCAAACTCTCCTTTCCTTCAG-CCATATTCGGCAA 752
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 615 AGATGAGAAACTCAATCCAATCTCACCAAACTCTCCTTTCCTTCAGCCCA-ATTCGGCAA 673
Query 753 CCGGGTTTCCATCTCCATCTTCTTCCTCATCATCGTCGTCTTCCCGTGGTTGTGTTAGAA 812
|||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 674 CCGGTTTTCCGTCTCCATCTTCTTCGTCATCATCGTCG---TCCCGTGGTTGTGTTAGAA 730
Query 813 TGAAATTTGGACTCAACTCGCCTGCAGTTAGAGTAGAAGGATTTGATTGCTTGAACCGTG 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TGAAATTTGGACTCAACTCGCCTGCAGTTAGAGTAGAAGGATTTGATTGCTTGAACCGTG 790
Query 873 ACCGTCAAAACTCGAGCATCCCTGCCATGGCTTAGTAGACAAACAACaaaaaaaCAAGTG 932
|||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 791 ACCGCCAAAACTCGAGCATCCCTGCCATGGCTTAGTAGACAAACAA-AAGAA--CAAGTG 847
Query 933 TACATAGAGATTCCGGAATCGTTCGTTCGCCAATGCCTAACAGAGGAGGATTTGATTACT 992
|| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 848 TATATAGAGATTCCGGAATCGTTCA--C-C-AATGCCTAACAGAGGAGGATTTGATTACT 903
Query 993 ACTGCTGCAACTATTACTACTACCATTTTTGAAAGTAAATGAATATGTTTTTGTTTTTCA 1052
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 904 ACTGCTGCTACTATTACTACTACCATTTTTGAA-GTAAATGAATATGTTTTTGCTTTTCA 962
Query 1053 TCTTCTCCTAagaga--gagagaga-g-GGAAG-AGGAAGGAGGAAGATGAAGATCAGTT 1107
|||| |||||||||| ||||| || | ||||| ||||||||||||||||||||||||||
Sbjct 963 TCTTTTCCTAAGAGATCGAGAGGGAAGAGGAAGGAGGAAGGAGGAAGATGAAGATCAGTT 1022
Query 1108 ACCGTCGCCGGTCACCGTTT---AACTGTTTTATTCAGGTTAGTGTTTGTATATAAAGAT 1164
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1023 ACCGTCGCCGGTCACCGTTTTTTAACTGTTTTATTCAGGTTAGTGTTTGTATATAAAGAT 1082
Query 1165 GCAGTATTTAAAAGAAGAGTCGAATCTATGTATTCGTTTGGTGTTTTTCTGGGTCGGGCG 1224
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GCAGTATTTAAATGAAGAGTCGAATCTATGTATTCGTTTGGTGTTTTTCTGGGTCGGGCG 1142
Query 1225 GATCTTTAGTACTGTTTCATATATAACTAAGAGG-GAAGATTAGAAGATGAAGAAGCTGT 1283
|||||||| ||||||| ||||||||||||| || ||||||||||||| | | |||
Sbjct 1143 GATCTTTATTACTGTT--ATATATAACTAAG-GGAGAAGATTAGAAGA--A-GT---TGT 1193
Query 1284 AAAATTTTCTTGGG-AAGAAAA-CTCTGGTTTCTATCTTCTCGTTGTAATATAGATAATC 1341
|||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1194 AAAATTTTCTCGGGGAAAAAAAACTCTGGTTTCTATCTTCTCGTTGTAATATAGATAATG 1253
Query 1342 AACTTGGATTTATCTTCTTTCAGA---T-TCA-C-C-ATTGTATATAGTAATGTTTA-TT 1393
|| ||||||||||||||||||||| | ||| | | |||||||||||||||||||| ||
Sbjct 1254 AATTTGGATTTATCTTCTTTCAGAGAGTATCATCACCATTGTATATAGTAATGTTTAATT 1313
Query 1394 TT-T-CTTGGTGATTTCTAAGTTCTCTCTCACCTTTGTATAT 1433
|| | ||| || | || |||||||||||||||||||||||
Sbjct 1314 TTCTTCTTCTTGGTGACTTAGTTCTCTCTCACCTTTGTATAT 1355
> Ahg477491 jgi|Araly1|477491|fgenesh2_kg.3__192__AT3G02555.1
Length=746
Score = 97.1 bits (52), Expect = 3e-19
Identities = 186/244 (76%), Gaps = 35/244 (14%)
Strand=Plus/Plus
Query 365 AAAAAGATGAATCATTGCAACCTTCAGCAGAACGCCTTCATGTCTCGTGAGGAGAT-GAT 423
||||| ||||||||||| | |||||||||||||||||||||||||||||| || || ||
Sbjct 59 AAAAA-ATGAATCATTGTAGCCTTCAGCAGAACGCCTTCATGTCTCGTGACGA-ATCGA- 115
Query 424 G-GGATTTGA-CCGTAAGGATCTTGTTGTTTGTCCTAA-GC-CTC-GACGTGTTGGTT-T 477
| ||||||| || || ||| ||||| ||| || | ||| | || ||| | |
Sbjct 116 GAGGATTTGTTCC-TA----TCTA-TTGTTA-TCC-AATGGACTCTGTTGT-TTG-TCCT 165
Query 478 A--C-TCG-C---C-AACAACGTTATTCGTCCTCTTAGATTACATATGAGTCAAGCTGCA 529
| | ||| | | ||||||||||||||||| |||||||||||| | |||||| | | |
Sbjct 166 AAGCCTCGTCGTGCCAACAACGTTATTCGTCCCCTTAGATTACATTTTAGTCAATCAGGA 225
Query 530 GCCGACT--TGT--GTGATTCTAAAGCTGGTGCTGAGCTTTTGGAAATCATT-CGTAGAA 584
|| || | ||| ||||||||||||| || | || |||||||| || ||| |||||||
Sbjct 226 GCTGA-TGATGTATGTGATTCTAAAGCCGGGGAAGATCTTTTGGACAT-ATTTCGTAGAA 283
Query 585 AGGA 588
||||
Sbjct 284 AGGA 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55154674760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5