BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16120.2
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488460 jgi|Araly1|488460|fgenesh2_kg.6__1594__AT5G16120.2 1921 0.0
Ahg949808 jgi|Araly1|949808|scaffold_801695.1 313 3e-84
Ahg942455 jgi|Araly1|942455|scaffold_602999.1 257 1e-67
Ahg942294 jgi|Araly1|942294|scaffold_602838.1 257 1e-67
Ahg943051 jgi|Araly1|943051|scaffold_603595.1 235 6e-61
> Ahg488460 jgi|Araly1|488460|fgenesh2_kg.6__1594__AT5G16120.2
Length=1261
Score = 1921 bits (1040), Expect = 0.0
Identities = 1153/1208 (95%), Gaps = 5/1208 (0%)
Strand=Plus/Plus
Query 91 CTGAATGATTCTTTTTAGAATTTTTGTTTATGGCTCTGAGATCAGCAACAAAGCTTACGC 150
||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 1 CTGAATGATTCTTTTTAGAATATTTGTTAATGGCTCTGAGATCAG---CAAAGCTTACGC 57
Query 151 TTTTCAGTCCTTTACACGGTAGCACTAGTCACTAATTATGATTCGGTTTGTAGATAAAGG 210
|||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 58 TTTTCAGTCCTTTACACGGTAGCAATAGTCACTAATTTTGATTGGGTTTGTAGATAAAGG 117
Query 211 AAGAAGATCGTTGTGGCAAAGAAGGAAATCGATGGCTCCGACGGCGACGCTGGACAACAA 270
|||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 118 AAGAAGCTCGTTGTTGCAAAGAAGGAGATCGATGGCTCCGACGGCGACGCTGGATAAAAA 177
Query 271 TGAGGAGCTCCGGCGACTCAGGGAGGTTAATATTGACGAAGCTCCGGGGCGTCGTCGTGT 330
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGAGGAGCTCCGGCGACTCAAGGAGGTTAATATTGACGAAGCTCCGGGGCGTCGTCGTGT 237
Query 331 TCGTGATTCCTTGAAAGATATTCAGCTTAATCTCGATCATATCCTCTTCAAGACACCAGA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCGTGATTCCTTGAAAGATATTCAGCTTAATCTCGATCATATCCTCTTCAAGACACCAGA 297
Query 391 AAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTGAGATTTTCTC 450
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAAGGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTGAGATTTTCTC 357
Query 451 TAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCTGCCATGGTTA 510
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCTGCCATGGTTA 417
Query 511 TGGAGATACTTGCACATTTTTCTTCGAAGGAATTGCAAGGAGATTGGCATTGTCTGGATA 570
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 418 TGGAGATACTTGCACGTTTTTCTTCGAAGGGATTGCAAGGAGATTGGCATTGTCGGGATA 477
Query 571 TGGAGTTTTCGCTATGGATTATCCGGGATTCGGCTTATCAGAGGGCTTGCATGGTTATAT 630
|||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||
Sbjct 478 TGGAGTTTTCGCTATGGATTATCCGGGATTTGGCTTGTCGGAGGGCTTACATGGTTATAT 537
Query 631 CCCTAGCTTTGATCTCCTTGTTCAAGATGTTATTGAGCATTACTCCAACATTAAAGCGAA 690
|||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 538 TCCTAGCTTTGATCTTCTTGTTCAAGATGTCATGGAGCATTACTCCAACATGAAAGCGAA 597
Query 691 TCCTGAGTTTAGTTCTCTACCGAGCTTTCTCTTTGGACAGTCAATGGGTGGAGCTGTGTC 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCCTGAGTTTAGTTCTCTACCGAGCTTTCTCTTTGGACAGTCAATGGGTGGAGCTGTGTC 657
Query 751 ACTCAAAATACATCTCAAACAACCAAATGCGTGGGCCGGCGCAGTCTTGTTAGCACCAAT 810
|||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||
Sbjct 658 ACTCAAAATACATCTCAAACAACCAAATGCATGGACCGGTGCAGTCTTGCTAGCACCAAT 717
Query 811 GTGCAAAATTGCAGATGATTTGGTTCCACCACCTGTATTGAAACAGATTTTGATCGGTCT 870
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 718 GTGCAAAATTGCAGATGATTTGGTTCCACCACCGGTATTAAAACAGATTTTGATCGGCCT 777
Query 871 AGCTAATGTTCTACCAAAACACAAGTTGGTTCCACAAAAGGATTTAGCAGAAGCAGGGTT 930
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 AGCCAATGTTCTACCGAAACACAAGTTGGTACCACAAAAGGATTTAGCAGAAGCAGGGTT 837
Query 931 TAGAGATATCAGGAAGAGGGATATGACACCATACAACATGATTTGTTACAGCGGCAAACC 990
||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 838 TAGAGATATCAGGAAGAGGGAAATGACACTATACAACATGATTTGTTACAGTGGCAAACC 897
Query 991 ACGGCTACGGACTGCAGTAGAAATGCTTCGAACAACTCAGGACATTGAAAAACAATTGCA 1050
|||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 898 ACGGCTACGGACTGCAGTAGAAATGCTTAGAACAACTCAGGAGATCGAAAAACAATTGCA 957
Query 1051 GGAGGTATCTTTGCCGATATTGATTCTACATGGAGAAGCTGATACAGTGACAGATCCTTC 1110
|||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 958 GGAGGTGTCTTTGCCGATACTGATTCTACACGGACAAGCTGATACAGTGACAGATCCTTC 1017
Query 1111 AGTGAGCAGAGAGTTGTACGAGAAAGCCAAAAGTCCAGACAAGAAGATAGTTTTGTATGA 1170
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1018 AGTGAGCAGAGAGCTGTACGAGAAAGCGAAAAGTCCAGACAAGAAGATAGTTTTGTATGA 1077
Query 1171 AAATGCTTATCATTCTCTGCTCGAAGGCGAACCAGACGACATGATTCTCCGTGTCTTGTC 1230
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAATGCTTATCACTCTCTGCTCGAAGGCGAACCAGACGACATGATTCTCCGTGTCTTGTC 1137
Query 1231 CGATATTATCTCGTGGCTCAATGACCATAGCTTGCAAGCTGAGGGATCATCT-GTTACTA 1289
||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||
Sbjct 1138 CGATATTATCTCGTGGCTCGATGACCATAGCTTGCAAGCTGAAGGATCAT-TAGTTACTA 1196
Query 1290 CTATGTAG 1297
||||||||
Sbjct 1197 CTATGTAG 1204
Score = 69.4 bits (37), Expect = 7e-11
Identities = 48/53 (91%), Gaps = 1/53 (2%)
Strand=Plus/Plus
Query 1320 GTTTTTAGGTTCTCA-TTTACCTAGTGAAGAGTATTTCTCAACGAATAAGCAA 1371
|||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 1209 GTTTTTAGGTAAACATTTTACTTAGTGAAGAGTATTTCTCAACGAATAAGCAA 1261
> Ahg949808 jgi|Araly1|949808|scaffold_801695.1
Length=301
Score = 313 bits (169), Expect = 3e-84
Identities = 199/213 (93%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 381 AGACACCAGAAAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTG 440
|||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 28 AGACACCAGAGACTGGGATTAAGACAAAGGAGTCTTATGAGGTGAATTCGAGAGGAGTTG 87
Query 441 AGATTTTCTCTAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCT 500
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 88 AGATCTTCTCCAAAAGCTGGCTTCCTGAAGCTTCTAGGCCTAGAGCTTTGGTTTGTTTCT 147
Query 501 GCCATGGTTATGGAGATACTTGCACATTTTTCTTCGAAGG-A--A-TTGCAAGGAGATTG 556
||||||||||||||||||||||||| |||||||||||||| | | ||||||| ||||||
Sbjct 148 GCCATGGTTATGGAGATACTTGCACGTTTTTCTTCGAAGGCAGGAATTGCAAGAAGATTG 207
Query 557 GCATTGTCTGGATATGGAGTTTTCGCTATGGAT 589
|||||||| |||||||||||||| |||||||||
Sbjct 208 GCATTGTCGGGATATGGAGTTTTTGCTATGGAT 240
> Ahg942455 jgi|Araly1|942455|scaffold_602999.1
Length=229
Score = 257 bits (139), Expect = 1e-67
Identities = 153/160 (96%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 381 AGACACCAGAAAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTG 440
|||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 28 AGACACCAGAGACTGGGATTAAGACAAAGGAGTCTTATGAGGTGAATTCGAGAGGAGTTG 87
Query 441 AGATTTTCTCTAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCT 500
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 88 AGATCTTCTCCAAAAGCTGGCTTCCTGAAGCTTCTAGGCCTAGAGCTTTGGTTTGTTTCT 147
Query 501 GCCATGGTTATGGAGATACTTGCACATTTTTCTTCGAAGG 540
||||||||||||||||||||||||| ||||||||||||||
Sbjct 148 GCCATGGTTATGGAGATACTTGCACGTTTTTCTTCGAAGG 187
> Ahg942294 jgi|Araly1|942294|scaffold_602838.1
Length=229
Score = 257 bits (139), Expect = 1e-67
Identities = 153/160 (96%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 381 AGACACCAGAAAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTG 440
|||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 28 AGACACCAGAGACTGGGATTAAGACAAAGGAGTCTTATGAGGTGAATTCGAGAGGAGTTG 87
Query 441 AGATTTTCTCTAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCT 500
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 88 AGATCTTCTCCAAAAGCTGGCTTCCTGAAGCTTCTAGGCCTAGAGCTTTGGTTTGTTTCT 147
Query 501 GCCATGGTTATGGAGATACTTGCACATTTTTCTTCGAAGG 540
||||||||||||||||||||||||| ||||||||||||||
Sbjct 148 GCCATGGTTATGGAGATACTTGCACGTTTTTCTTCGAAGG 187
> Ahg943051 jgi|Araly1|943051|scaffold_603595.1
Length=350
Score = 235 bits (127), Expect = 6e-61
Identities = 183/209 (88%), Gaps = 8/209 (4%)
Strand=Plus/Plus
Query 210 GAA-GAAGATCGTTGTGGC-AAAGAAGGAAATCGATGGCTCCGACGGCGACGCTGGACAA 267
||| |||| | | |||||| |||||| || |||||||||||||| |||| ||| | |
Sbjct 33 GAAGGAAGTTTGGTGTGGCGAAAGAA-GAGATCGATGGCTCCGA-TGCGAAGCT--A-GA 87
Query 268 CAATGAGGAGCTCCGGCGACTCAGGGAGGTTAATATTGACGAAGCTCCGGGGCGTCGTCG 327
|||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||
Sbjct 88 CAATGAGGAGCTTGGGCGACTCAAGGAGGTTAATATTGACGAAGCTTCGGCGCGTCGTTA 147
Query 328 TGTTCGTGATTCCTTGAAAGATATTCAGCTTAATCTCGATCATATCCTCTTCAAGACACC 387
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 148 TGTTCGTGATTCCTTGAAAGATGTCCAGCTTAATCTCGATCATATCCTCTTCAAGACACC 207
Query 388 AGAAAATGGGATTAAGACAAAGGAGTCTT 416
||| | ||||||||||||||||||| |||
Sbjct 208 AGAGACTGGGATTAAGACAAAGGAG-CTT 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5