BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16120.2 Length=1438 Score E Sequences producing significant alignments: (Bits) Value Ahg488460 jgi|Araly1|488460|fgenesh2_kg.6__1594__AT5G16120.2 1921 0.0 Ahg949808 jgi|Araly1|949808|scaffold_801695.1 313 3e-84 Ahg942455 jgi|Araly1|942455|scaffold_602999.1 257 1e-67 Ahg942294 jgi|Araly1|942294|scaffold_602838.1 257 1e-67 Ahg943051 jgi|Araly1|943051|scaffold_603595.1 235 6e-61 > Ahg488460 jgi|Araly1|488460|fgenesh2_kg.6__1594__AT5G16120.2 Length=1261 Score = 1921 bits (1040), Expect = 0.0 Identities = 1153/1208 (95%), Gaps = 5/1208 (0%) Strand=Plus/Plus Query 91 CTGAATGATTCTTTTTAGAATTTTTGTTTATGGCTCTGAGATCAGCAACAAAGCTTACGC 150 ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| Sbjct 1 CTGAATGATTCTTTTTAGAATATTTGTTAATGGCTCTGAGATCAG---CAAAGCTTACGC 57 Query 151 TTTTCAGTCCTTTACACGGTAGCACTAGTCACTAATTATGATTCGGTTTGTAGATAAAGG 210 |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| Sbjct 58 TTTTCAGTCCTTTACACGGTAGCAATAGTCACTAATTTTGATTGGGTTTGTAGATAAAGG 117 Query 211 AAGAAGATCGTTGTGGCAAAGAAGGAAATCGATGGCTCCGACGGCGACGCTGGACAACAA 270 |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| || || Sbjct 118 AAGAAGCTCGTTGTTGCAAAGAAGGAGATCGATGGCTCCGACGGCGACGCTGGATAAAAA 177 Query 271 TGAGGAGCTCCGGCGACTCAGGGAGGTTAATATTGACGAAGCTCCGGGGCGTCGTCGTGT 330 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 178 TGAGGAGCTCCGGCGACTCAAGGAGGTTAATATTGACGAAGCTCCGGGGCGTCGTCGTGT 237 Query 331 TCGTGATTCCTTGAAAGATATTCAGCTTAATCTCGATCATATCCTCTTCAAGACACCAGA 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TCGTGATTCCTTGAAAGATATTCAGCTTAATCTCGATCATATCCTCTTCAAGACACCAGA 297 Query 391 AAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTGAGATTTTCTC 450 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 AAAGGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTGAGATTTTCTC 357 Query 451 TAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCTGCCATGGTTA 510 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 CAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCTGCCATGGTTA 417 Query 511 TGGAGATACTTGCACATTTTTCTTCGAAGGAATTGCAAGGAGATTGGCATTGTCTGGATA 570 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 418 TGGAGATACTTGCACGTTTTTCTTCGAAGGGATTGCAAGGAGATTGGCATTGTCGGGATA 477 Query 571 TGGAGTTTTCGCTATGGATTATCCGGGATTCGGCTTATCAGAGGGCTTGCATGGTTATAT 630 |||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct 478 TGGAGTTTTCGCTATGGATTATCCGGGATTTGGCTTGTCGGAGGGCTTACATGGTTATAT 537 Query 631 CCCTAGCTTTGATCTCCTTGTTCAAGATGTTATTGAGCATTACTCCAACATTAAAGCGAA 690 |||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| Sbjct 538 TCCTAGCTTTGATCTTCTTGTTCAAGATGTCATGGAGCATTACTCCAACATGAAAGCGAA 597 Query 691 TCCTGAGTTTAGTTCTCTACCGAGCTTTCTCTTTGGACAGTCAATGGGTGGAGCTGTGTC 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TCCTGAGTTTAGTTCTCTACCGAGCTTTCTCTTTGGACAGTCAATGGGTGGAGCTGTGTC 657 Query 751 ACTCAAAATACATCTCAAACAACCAAATGCGTGGGCCGGCGCAGTCTTGTTAGCACCAAT 810 |||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||| Sbjct 658 ACTCAAAATACATCTCAAACAACCAAATGCATGGACCGGTGCAGTCTTGCTAGCACCAAT 717 Query 811 GTGCAAAATTGCAGATGATTTGGTTCCACCACCTGTATTGAAACAGATTTTGATCGGTCT 870 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 718 GTGCAAAATTGCAGATGATTTGGTTCCACCACCGGTATTAAAACAGATTTTGATCGGCCT 777 Query 871 AGCTAATGTTCTACCAAAACACAAGTTGGTTCCACAAAAGGATTTAGCAGAAGCAGGGTT 930 ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 778 AGCCAATGTTCTACCGAAACACAAGTTGGTACCACAAAAGGATTTAGCAGAAGCAGGGTT 837 Query 931 TAGAGATATCAGGAAGAGGGATATGACACCATACAACATGATTTGTTACAGCGGCAAACC 990 ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| Sbjct 838 TAGAGATATCAGGAAGAGGGAAATGACACTATACAACATGATTTGTTACAGTGGCAAACC 897 Query 991 ACGGCTACGGACTGCAGTAGAAATGCTTCGAACAACTCAGGACATTGAAAAACAATTGCA 1050 |||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||| Sbjct 898 ACGGCTACGGACTGCAGTAGAAATGCTTAGAACAACTCAGGAGATCGAAAAACAATTGCA 957 Query 1051 GGAGGTATCTTTGCCGATATTGATTCTACATGGAGAAGCTGATACAGTGACAGATCCTTC 1110 |||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||||| Sbjct 958 GGAGGTGTCTTTGCCGATACTGATTCTACACGGACAAGCTGATACAGTGACAGATCCTTC 1017 Query 1111 AGTGAGCAGAGAGTTGTACGAGAAAGCCAAAAGTCCAGACAAGAAGATAGTTTTGTATGA 1170 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1018 AGTGAGCAGAGAGCTGTACGAGAAAGCGAAAAGTCCAGACAAGAAGATAGTTTTGTATGA 1077 Query 1171 AAATGCTTATCATTCTCTGCTCGAAGGCGAACCAGACGACATGATTCTCCGTGTCTTGTC 1230 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 AAATGCTTATCACTCTCTGCTCGAAGGCGAACCAGACGACATGATTCTCCGTGTCTTGTC 1137 Query 1231 CGATATTATCTCGTGGCTCAATGACCATAGCTTGCAAGCTGAGGGATCATCT-GTTACTA 1289 ||||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||| Sbjct 1138 CGATATTATCTCGTGGCTCGATGACCATAGCTTGCAAGCTGAAGGATCAT-TAGTTACTA 1196 Query 1290 CTATGTAG 1297 |||||||| Sbjct 1197 CTATGTAG 1204 Score = 69.4 bits (37), Expect = 7e-11 Identities = 48/53 (91%), Gaps = 1/53 (2%) Strand=Plus/Plus Query 1320 GTTTTTAGGTTCTCA-TTTACCTAGTGAAGAGTATTTCTCAACGAATAAGCAA 1371 |||||||||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 1209 GTTTTTAGGTAAACATTTTACTTAGTGAAGAGTATTTCTCAACGAATAAGCAA 1261 > Ahg949808 jgi|Araly1|949808|scaffold_801695.1 Length=301 Score = 313 bits (169), Expect = 3e-84 Identities = 199/213 (93%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 381 AGACACCAGAAAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTG 440 |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 28 AGACACCAGAGACTGGGATTAAGACAAAGGAGTCTTATGAGGTGAATTCGAGAGGAGTTG 87 Query 441 AGATTTTCTCTAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCT 500 |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 88 AGATCTTCTCCAAAAGCTGGCTTCCTGAAGCTTCTAGGCCTAGAGCTTTGGTTTGTTTCT 147 Query 501 GCCATGGTTATGGAGATACTTGCACATTTTTCTTCGAAGG-A--A-TTGCAAGGAGATTG 556 ||||||||||||||||||||||||| |||||||||||||| | | ||||||| |||||| Sbjct 148 GCCATGGTTATGGAGATACTTGCACGTTTTTCTTCGAAGGCAGGAATTGCAAGAAGATTG 207 Query 557 GCATTGTCTGGATATGGAGTTTTCGCTATGGAT 589 |||||||| |||||||||||||| ||||||||| Sbjct 208 GCATTGTCGGGATATGGAGTTTTTGCTATGGAT 240 > Ahg942455 jgi|Araly1|942455|scaffold_602999.1 Length=229 Score = 257 bits (139), Expect = 1e-67 Identities = 153/160 (96%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 381 AGACACCAGAAAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTG 440 |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 28 AGACACCAGAGACTGGGATTAAGACAAAGGAGTCTTATGAGGTGAATTCGAGAGGAGTTG 87 Query 441 AGATTTTCTCTAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCT 500 |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 88 AGATCTTCTCCAAAAGCTGGCTTCCTGAAGCTTCTAGGCCTAGAGCTTTGGTTTGTTTCT 147 Query 501 GCCATGGTTATGGAGATACTTGCACATTTTTCTTCGAAGG 540 ||||||||||||||||||||||||| |||||||||||||| Sbjct 148 GCCATGGTTATGGAGATACTTGCACGTTTTTCTTCGAAGG 187 > Ahg942294 jgi|Araly1|942294|scaffold_602838.1 Length=229 Score = 257 bits (139), Expect = 1e-67 Identities = 153/160 (96%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 381 AGACACCAGAAAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTG 440 |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 28 AGACACCAGAGACTGGGATTAAGACAAAGGAGTCTTATGAGGTGAATTCGAGAGGAGTTG 87 Query 441 AGATTTTCTCTAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCT 500 |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 88 AGATCTTCTCCAAAAGCTGGCTTCCTGAAGCTTCTAGGCCTAGAGCTTTGGTTTGTTTCT 147 Query 501 GCCATGGTTATGGAGATACTTGCACATTTTTCTTCGAAGG 540 ||||||||||||||||||||||||| |||||||||||||| Sbjct 148 GCCATGGTTATGGAGATACTTGCACGTTTTTCTTCGAAGG 187 > Ahg943051 jgi|Araly1|943051|scaffold_603595.1 Length=350 Score = 235 bits (127), Expect = 6e-61 Identities = 183/209 (88%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 210 GAA-GAAGATCGTTGTGGC-AAAGAAGGAAATCGATGGCTCCGACGGCGACGCTGGACAA 267 ||| |||| | | |||||| |||||| || |||||||||||||| |||| ||| | | Sbjct 33 GAAGGAAGTTTGGTGTGGCGAAAGAA-GAGATCGATGGCTCCGA-TGCGAAGCT--A-GA 87 Query 268 CAATGAGGAGCTCCGGCGACTCAGGGAGGTTAATATTGACGAAGCTCCGGGGCGTCGTCG 327 |||||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||| Sbjct 88 CAATGAGGAGCTTGGGCGACTCAAGGAGGTTAATATTGACGAAGCTTCGGCGCGTCGTTA 147 Query 328 TGTTCGTGATTCCTTGAAAGATATTCAGCTTAATCTCGATCATATCCTCTTCAAGACACC 387 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 148 TGTTCGTGATTCCTTGAAAGATGTCCAGCTTAATCTCGATCATATCCTCTTCAAGACACC 207 Query 388 AGAAAATGGGATTAAGACAAAGGAGTCTT 416 ||| | ||||||||||||||||||| ||| Sbjct 208 AGAGACTGGGATTAAGACAAAGGAG-CTT 235 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53783425940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5