BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16130.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488462 jgi|Araly1|488462|fgenesh2_kg.6__1596__AT5G16130.1 1465 0.0
Ahg477492 jgi|Araly1|477492|fgenesh2_kg.3__193__AT3G02560.1 616 1e-175
Ahg474020 jgi|Araly1|474020|fgenesh2_kg.1__3974__AT1G48830.1 313 2e-84
> Ahg488462 jgi|Araly1|488462|fgenesh2_kg.6__1596__AT5G16130.1
Length=914
Score = 1465 bits (793), Expect = 0.0
Identities = 876/916 (96%), Gaps = 6/916 (1%)
Strand=Plus/Plus
Query 1 ATCGAACATTAAAACCTGATTTTACTGAAACTGTGCTGCGAAGGAGAAGCCGCAAACCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATCGAACATTAAAACCTGATTTTACTGAAACTGTGCTGCGAAGGAGAAGCCGCAAGCCAT 60
Query 61 TTTTTGTCAATCTAGGGTTCTTCTTCGTACTTGCAGATTTCGCCTCCGTTTTCACTACGA 120
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 61 TTTTTGTGAATCTAGGGTTCTTCTTCGTTCTTGCAGATTTCGCCTCCGTTTTCACTAAGA 120
Query 121 TCTGTGAAGATGTTCTCCGCTCAGAACAAGATCAAGAAGGACAAGAATGCTGAGCCAACA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGTGAAGATGTTCTCCGCTCAGAACAAGATCAAGAAGGACAAGAATGCTGAGCCAACA 180
Query 181 GAATGCGAGGAGCAAGTTGCTCAGGCTTTGTTTGATTTGGAGAACACTAACCAGGAGTTG 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GAATGTGAGGAGCAAGTTGCTCAGGCTTTGTTTGATTTGGAGAACACTAACCAGGAGCTG 240
Query 241 AAAAGCGAGTTGAAAGATCTCTACATCAACCAAGCTGTTCACATGGATATCTCTGGAAAC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 AAAAGCGAGTTGAAAGATCTCTACATCAACCAAGCTGTTCAAATGGATATCTCCGGAAAC 300
Query 301 CGCAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCAT 360
Query 361 CCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTTATCTTTGTTACC 420
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 361 CCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTTAGTGGAAAGGATGTCATCTTTGTTACC 420
Query 421 ACAAGAAGGATCATGCGTCCCCCCAAGAAGGGTGCTGCTGTTCAGAGGCCACGTAACAGA 480
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 421 ACAAGAAGGATCATGCGTCCTCCTAAGAAGGGTGCTGCTGTTCAGAGGCCACGTAACAGA 480
Query 481 ACTCTTACCTCAGTTCATGAAGCTATGCTTGAAGATGTTGCTTTCCCCGCTGAGATTGTT 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTCTTACCTCTGTTCATGAAGCTATGCTTGAAGATGTTGCTTTCCCCGCTGAGATTGTT 540
Query 541 GGAAAGCGTACTCGCTACCGTCTTGATGGTTCCAAGATCATGAAGGTCTTTTTGGATGCC 600
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GGAAAGCGTACTCGGTACCGTCTTGATGGTTCCAAGATCATGAAGGTCTATTTGGATGCC 600
Query 601 AAGGAAAAGAACAACACAGAGTACAAGCTCGAGACTATGGTCGGTGTGTACCGTAAACTT 660
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 601 AAGGAAAAGAACAACACTGAATACAAGCTCGAGACTATGGTGGGTGTGTACCGTAAACTT 660
Query 661 ACTGGCAAAGATGTTGTTTTTGAGTACCCAGTCGAAGCTTGAAAGAAGATGATGAAGAAC 720
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 ACCGGCAAAGATGTCGTTTTTGAGTACCCAGTCGAAGCTTGAAAGAAGATGATGATGAAT 720
Query 721 CATCAGGATAGTGAAAGAGAGCTTTTGT-TTATGTTTTGTGGTATTTAGGATGAAGGAAA 779
||||||||||| |||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 721 CATCAGGATAGAGAAAGAGAGCTTTT-TATTCTGTTTTGTGGTATTTAGGATGAAGGAAA 779
Query 780 CTCTCTTGATTCAGTTCCTTGTTCACAATCTTTAATGTTCTATTTACAATGACTACTTTT 839
|||||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||||
Sbjct 780 CTCTCTTGATTCAGTTCCTTATGCACAATCTTTAATGTTTTATTTACAAAGACTACTTTT 839
Query 840 TGTGTTTTTCAATTTTGAAACCT-CT--ATGATTTCAGATTCGTTCTCAAATTTCAACTG 896
|||| |||||||||||||||||| || || ||||||||||| ||| |||||||||| |
Sbjct 840 TGTGCTTTTCAATTTTGAAACCTTCTTTATAATTTCAGATTCATTC-CAAATTTCAAAAG 898
Query 897 CAACACATTGAGAAGA 912
||||||||||||||||
Sbjct 899 CAACACATTGAGAAGA 914
> Ahg477492 jgi|Araly1|477492|fgenesh2_kg.3__193__AT3G02560.1
Length=696
Score = 616 bits (333), Expect = 1e-175
Identities = 520/609 (85%), Gaps = 17/609 (3%)
Strand=Plus/Plus
Query 116 TAC-GATCTGTGAAGATGT-TCTCCGCTCAGAACAAGATCAAGAAGGACAAGAATGCT-G 172
||| ||||||| ||||||| | || | ||||||||||||| | ||||| ||| || | |
Sbjct 25 TACTGATCTGTCAAGATGTAT-TCTGGTCAGAACAAGATCCACAAGGATAAGGGTG-TGG 82
Query 173 AGCCAACAGAATGCGAGGAGCAAGTTGCTCAGGCT-TTGTTTGATTTGGAGAACACTAAC 231
| |||||||| | || ||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct 83 AACCAACAGAGTTTGAAGAGCAAGTTACTCAGGCTCTT-TTTGACTTGGAGAACACCAAC 141
Query 232 CAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATCAACCAAGCTGTTCACATGGATATC 291
||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 142 CAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATTAACCAAGCAGTTCATATGGATATT 201
Query 292 TCTGGAAACCGCAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGC 351
||| | ||||||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 202 TCTAGCAACCGCAAAGCTGTTGTCATCTACGTTCCATTCAGACTGAGGAAAGCTTTCCGC 261
Query 352 AAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTTATC 411
|||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 262 AAGATTCATCTCCGTCTTGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAAGATGTTATC 321
Query 412 TTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGG-TGCTGCTGTTCAGAGGCC 470
|||||| | || ||||| |||||||||||||| ||||| || | | ||||||||||| ||
Sbjct 322 TTTGTTGCTACCAGAAGAATCATGCGTCCCCCAAAGAAAGGCT-CAGCTGTTCAGAGACC 380
Query 471 ACGTAACAGAACTCTTACCTCAGTTCATGAAGCTATGCTTGAAGATGTTGCTTTCCCCGC 530
||| |||||||||||||| || || |||||||| ||||| || ||||| |||| ||| ||
Sbjct 381 ACGCAACAGAACTCTTACTTCTGTCCATGAAGCCATGCTCGAGGATGTCGCTTACCCTGC 440
Query 531 TGAGATTGTTGGAAAGCGTACTC-GCTACCGTCTTGATGGTTCCAAGATCATGAAGGTCT 589
||||||||| || ||||| || | | |||||||||||||| ||||||||| ||||||||
Sbjct 441 TGAGATTGTAGGGAAGCGAAC-CAGATACCGTCTTGATGGCACCAAGATCACGAAGGTCT 499
Query 590 TTTTGGATGCCAAGGAAAAGAACAACACAGAGTACAAGCTCGAGACTATGGTCGGTGTGT 649
|||||| | ||| | |||||| |||| ||||||||||| ||||| ||||| |||||||
Sbjct 500 ATTTGGACACTAAGCAGAAGAACGACACTGAGTACAAGCTTGAGACAATGGTGGGTGTGT 559
Query 650 ACCGTAAACTTACTGGCAAAGATGTTGTTTTTGAGTACCCAGTC---GAAGCTTGAAAGA 706
|| | |||||||| || | ||||| ||||| |||||||||||| |||||||||| ||
Sbjct 560 ACAGGAAACTTACAGGGAGGGATGTAGTTTTCGAGTACCCAGTCATAGAAGCTTGAA-GA 618
Query 707 AGATG-ATG 714
|||| |||
Sbjct 619 -GATGGATG 626
> Ahg474020 jgi|Araly1|474020|fgenesh2_kg.1__3974__AT1G48830.1
Length=741
Score = 313 bits (169), Expect = 2e-84
Identities = 397/506 (78%), Gaps = 20/506 (4%)
Strand=Plus/Plus
Query 190 GAGCAAGTTGCTCAGGCTTTGTTTGATTTGGAGAACACTAACCAGGAGTTGAAAAGCGAG 249
|||||||||||||||||||| ||||||||||||||||| || || || |||||||| |||
Sbjct 158 GAGCAAGTTGCTCAGGCTTTCTTTGATTTGGAGAACACCAATCAAGAATTGAAAAGTGAG 217
Query 250 TTGAAAGATCTCTACATCAAC-CAAGCTGTTCACA-TGGATATCTCTGGA-AACCGCAAA 306
||||| ||| | ||| ||||| | |||||||| | | ||||| |||||| | |||||
Sbjct 218 TTGAAGGATTTATACGTCAACTC-GGCTGTTCA-AGTTGATATATCTGGAGGA-CGCAAG 274
Query 307 GCTGTTGTGATTTACGTTCCATT-CAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCG 365
|| |||| || | ||||| || ||||||||| ||||||| |||||| || ||| |
Sbjct 275 GCAATTGTTATCAATGTTCC-TTACAGATTGAGAAAAGCTTACCGCAAAATCCATGTTAG 333
Query 366 TCTCG-TCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTTATCTTTGTTACCACAA 424
|| | || | || ||||||||||||||||||||||||||||| ||| | || | || |
Sbjct 334 GCTTGTTC-GTGAACTTGAGAAGAAGTTCAGTGGAAAGGATGTGATCCTCATTGCTACCA 392
Query 425 GAAGGATCATGCGTCCCCCCAAGAAGGG-TGCTGCTGTTCAGAGGCCACGTAACAGAACT 483
| ||||| || | || || |||||||| | | |||| |||| ||||| ||| | |||
Sbjct 393 GGAGGATTGTGAGGCCACCTAAGAAGGGCT-CAGCTGCAAAGAGACCACGCAACCGTACT 451
Query 484 CTTACCTCAGTTCATGAAGCTATGCTTGAAGATGTTG-CTTTCCCCGCTGAGATTGTTGG 542
|| |||||||| |||||||| || ||||| ||||||| ||| || || |||||||||||
Sbjct 452 CTGACCTCAGTCCATGAAGCCATTCTTGATGATGTTGTCTTACCT-GCAGAGATTGTTGG 510
Query 543 AAAGCGTACTCGCTACCGTCTTGATGGTTCCAAGATCATGAAGGTCTTTTTGGATGCCAA 602
||||| || | ||| | || || ||| |||| |||||||||||||| ||||| ||||
Sbjct 511 GAAGCGCACAAGGTACAGACTCGACGGTACCAAAATCATGAAGGTCTTCTTGGAC-CCAA 569
Query 603 -GGAAAAGAACAACACAGAGTACAAGCTCGAGACTATGGTCGG-TGTGTACC-GTAAACT 659
||||| ||||||||||||||||||| | ||| || | || | ||| ||| | || ||
Sbjct 570 AGGAAAGGAACAACACAGAGTACAAGGTTGAGGCTTTC-TCTGCTGTTTACAAG-AAGCT 627
Query 660 TACTGGCAAAGATGTTGTTTTTGAGT 685
|||||||||||||| || |||||||
Sbjct 628 CACTGGCAAAGATGTCGTCTTTGAGT 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5