BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16140.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488464 jgi|Araly1|488464|fgenesh2_kg.6__1598__AT5G16140.1 1221 0.0
> Ahg488464 jgi|Araly1|488464|fgenesh2_kg.6__1598__AT5G16140.1
Length=865
Score = 1221 bits (661), Expect = 0.0
Identities = 758/802 (95%), Gaps = 17/802 (2%)
Strand=Plus/Plus
Query 57 AAGAAGAAGAGGTCTTTGAATCAACAACAGTTCCATGTTGTGCCCAACGTATACACCAAG 116
||||||||||| ||||||||| ||||||||| ||| | |||||||||||||||||||
Sbjct 24 AAGAAGAAGAGTTCTTTGAAT---CAACAGTTCAATGCTCTGCCCAACGTATACACCAAC 80
Query 117 TGTTTACCATTTTCAAACGCAAAAGCCAGTTTTCCGGAAACAGAGGTTTCGGGTTTGTTC 176
| ||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 81 TATTTACCACTTTCATACGCAAAAGCCGGTTTTTCGGAAACCGAGGTTTCGGGTTTGTTC 140
Query 177 ATCTACTTCTGGTGGTGAGGATGATAGATTCAAAGTAGAGTACACTCCTTGGCTTATCGT 236
||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 141 ATCTACTTC---TAGTGAGAATGACAGATTCAAAGTAGAGTACACTCCTTGGCTTATCGT 197
Query 237 TGGGTTGGGCAATCCAGGAAACAAGTATCATGGAACAAGACACAATGTTGGTTTCGAGAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 TGGGTTGGGCAATCCAGGAAACAAGTATCATGGAACAAGACACAATGTTGGTTTCGAGAT 257
Query 297 GATCGATGTGTTGGCTAGAAAAGAAGGGGTGTTGATGAACACTATACAGTCCAAAGCTCT 356
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 258 GATCGATGTGTTGGCTAGAAAAGAAGGGGTTTTGATGAACACGATACAGTCAAAAGCACT 317
Query 357 AATCGGAATAGGTGCTATTGAAGATGTACCTATCTTGTTGGCTAAACCTCAGACTTATAT 416
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 318 AATCGGAATAGGTGCTATTGAAGATGTACCTATCTTGCTGGCTAAACCTCAGACTTATAT 377
Query 417 GAACTTCAGCGGCGAATCGGTTGGATCTCTAGCTTCACACTATCGAGTACCATTGCGCCA 476
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 378 GAACTTCAGCGGCGAATCGGTTGGATCTTTAGCTTCACACTATCGAGTACCTTTGCGCCA 437
Query 477 CATTTTAATGATTTACGATGAGATGGCTTTACCAAATGGGGTTTTGAGACTTCAACCGAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CATTTTAATGATTTACGATGAGATGGCTTTACCAAATGGGGTTTTGAGACTTCAACCGAA 497
Query 537 AGGAGGTCAAGGCTATCACAACGGAGTGAAGAGTGTAATGGGGCATTTGGATGGTCGTCG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AGGAGGTCAAGGCTATCACAACGGAGTGAAGAGTGTAATGGGGCATTTGGATGGTCGTCG 557
Query 597 AAACTTTCCTCGTTTAAGCATAGGCATTGGTAAACCACCTGGAAACATGGATATGAAAGC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AAACTTTCCTCGTTTAAGCATAGGCATTGGTAAACCACCTGGAAACATGGATATGAAAGC 617
Query 657 TTTTCTTCTTCAGAAGTTTAGTCCATTGGAACAGAAACAGATCGAGGAAGCACTCGAGCA 716
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 618 TTTTCTTCTTCAGAAGTTTAGTCCATTGGAACGGAAACAGATCGATGAAGCACTCGAGCA 677
Query 717 AGGAAGTGAAGCAGTGAAGACTCTTGTGCTTAATGGCTTCAATCAAGGAATTTCGAGATT 776
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AGGAAGTGAAGCTGTGAAGACTCTTGTGCTTAATGGCTTCAATCAAGGAATTTCGAGATT 737
Query 777 TAATCTTGTGCAGAAATATAAATTCCATAAAGTATAGACTCC----G-----ATTTGCAA 827
||||||||||||||| ||||||||||| |||||||||| ||| | ||||||||
Sbjct 738 TAATCTTGTGCAGAAGTATAAATTCCACAAAGTATAGAATCCTTTTGCTTTGATTTGCAA 797
Query 828 TAAAAGCAACCATGTAGAGATT 849
||| |||||||||||||||||
Sbjct 798 TAA--GCAACCATGTAGAGATT 817
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 ATCTCGTTCCAACGTCTTCGCAAAAGAA 28
||||||||||||||||||||||||||||
Sbjct 1 ATCTCGTTCCAACGTCTTCGCAAAAGAA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5