BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16150.1
Length=1880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941107 jgi|Araly1|941107|scaffold_601651.1 2591 0.0
> Ahg941107 jgi|Araly1|941107|scaffold_601651.1
Length=1678
Score = 2591 bits (1403), Expect = 0.0
Identities = 1580/1666 (95%), Gaps = 9/1666 (1%)
Strand=Plus/Plus
Query 100 AAAATGCAGTCGTCAACGTATGCGGTTAAAGGAAACGCTGCGTTTGCGTTTCAGAGACGG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 18 AAAATGCAGTCGTCAACGTATGCGGTTAAAGGAAACGCTGCGTTTGCGTTTCACAGACGG 77
Query 160 ACCTTCTCTTCTGACAGATCGACGACTTCTACCGGAATTCGCTTCGCTGGTTATAAGAGC 219
|||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 78 ACCTTCTCTTCTAACAGATCGACGACTTCTACCGGAATTCGCTTCGCTGGCAAGAAGAGC 137
Query 220 TTAGCCACCACCGGGCCACTCTACTGTTCTGGTTCTG-AAGCCATGGGAGCGACGCTTGC 278
||||||||||||| |||||||||||||||||||| | ||||||||||||| | ||||||
Sbjct 138 ATAGCCACCACCGGACCACTCTACTGTTCTGGTTC-GAAAGCCATGGGAGCTAAGCTTGC 196
Query 279 TCGTGCTGATAACGGGATCCAGAGCGTTATGAGTTTCTCTTCTGTCAAAGCTCGATCGGT 338
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 197 TCGTGCTGAAAACGGGATCCAGAGCGTTATGAGTTTCTCTTCGGTCAAAGCTCGATCGGT 256
Query 339 CAGAGCTCAAGCCTCATCTGATGGAGATGAAGAAGAAGCTATACCTCTGAGATCTGAAGG 398
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 257 CAGAGCTCAAGCCTC--CT-CTGGAGATGCAGAAGAAGCTATACCTCTGAGATCTGAAGG 313
Query 399 GAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTT 458
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 314 CAAAAGCTCTGGAACTGTTTTACCATTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTT 373
Query 459 TGGTTATCATCTCGGGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGAT 518
|||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 374 TGGTTATCATCTTGGGGTAGTCAATGGTGCTCTTGAATACCTTGCTAAGGATCTTGGGAT 433
Query 519 CGCCGAAAATACTGTTTTGCAAGGATGGATTGTTAGTTCTCTGCTTGCTGGTGCTACGGT 578
|||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 434 CGCCGAGAATACTGTTTTGCAAGGATGGATTGTTAGTGCTCTGCTCGCTGGTGCAACGGT 493
Query 579 AGGTTCATTCACTGGAGGTGCATTAGCTGACAAATTTGGACGAACAAGAACTTTTCAATT 638
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 AGGTTCATTTACCGGAGGTGCATTAGCTGACAAATTTGGACGAACAAGAACTTTTCAATT 553
Query 639 GGATGCTATCCCGCTTGCCATTGGAGCTTTCTTATGTGCAACAGCTCAGAGTGTGCAGAC 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GGATGCTATCCCGCTTGCCATTGGAGCTTTCTTATGTGCAACAGCTCAGAGTGTGCAGAC 613
Query 699 TATGATTGTGGGACGTCTGCTCGCTGGAATTGGAATTGGAATCTCATCAGCGATTGTACC 758
|||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 614 TATGATTGTGGGACGTTTGCTCGCAGGAATTGGAATCGGAATCTCATCAGCGATTGTACC 673
Query 759 ACTTTACATATCTGAGATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCA 818
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 674 ACTTTACATATCTGAGATATCACCAACTGAAATCCGCGGAGCACTCGGATCTGTGAACCA 733
Query 819 GTTGTTCATCTGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAGCAAA 878
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GTTGTTCATATGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAGCAAA 793
Query 879 CCCTCTATGGTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCAT 938
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 794 CCCTCTATGGTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTACTGGCCAT 853
Query 939 AGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGCAAGGAAAAGTCTCTGA 998
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 854 AGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGCAAGGAAAAGTCTCTCA 913
Query 999 AGCTGAAAAGGCGATCAAAACTTTGTATGGTAAAGAAAGAGTGGTTGAACTAGTTCGCGA 1058
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||
Sbjct 914 AGCTGAAAAGGCGATCAAAACTCTGTATGGTAAAGAAAGAGTTGTTGAACTAGTGCGTGA 973
Query 1059 CTTATCAGCCTCTGGCCAAGGTTCTTCTGAGCCGGAGGCAGGATGGTTTGATCTATTCAG 1118
||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 974 CTTATCAACCTCTGGCCAAGGTTCTTCAGAGCCAGAAGCAGGATGGTTTGATCTATTCAG 1033
Query 1119 CAGCCGCTACTGGAAAGTTGTAAGCGTAGGTGCGGCTCTCTTCTTGTTTCAACAGTTAGC 1178
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1034 CAGCCGCTACTGGAAAGTTGTAAGCGTAGGTGCTGCTCTGTTTTTGTTTCAACAGTTAGC 1093
Query 1179 CGGGATAAACGCAGTTGTGTATTACTCCACATCGGTATTCCGTAGTGCGGGAATCCAATC 1238
||||||||||||||||||||| ||||| |||||||| |||||||| || |||||||||||
Sbjct 1094 CGGGATAAACGCAGTTGTGTACTACTCTACATCGGTGTTCCGTAGCGCTGGAATCCAATC 1153
Query 1239 AGATGTTGCAGCCAGTGCTCTCGTTGGAGCATCAAATGTCTTTGGCACTGCTGTTGCTTC 1298
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1154 TGATGTTGCCGCCAGTGCTCTCGTTGGAGCATCGAATGTCTTTGGTACTGCTGTTGCTTC 1213
Query 1299 ATCGTTGATGGATAAAATGGGAAGGAAAAGTCTTTTACTGACAAGCTTTGGTGGAATGGC 1358
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1214 ATCCTTGATGGACAAAATGGGAAGGAAAAGTCTTTTACTCACAAGCTTTGGTGGAATGGC 1273
Query 1359 TTTGTCAATGCTGTTACTCTCCTTGTCCTTCACATGGAAGGCTCTTGCTGCCTATTCTGG 1418
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1274 TTTGTCGATGCTGTTGCTCTCCTTGTCCTTCACATGGAAGGCTCTTGCTGCATATTCTGG 1333
Query 1419 AACCCTTGCCGTTGTTGGAACTGTTCTATATGTCCTGTCATTCTCACTTGGTGCTGGCCC 1478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1334 AACCCTTGCCGTTGTTGGAACTGTCCTATATGTCCTGTCATTCTCACTTGGTGCTGGCCC 1393
Query 1479 GGTACCGGCTCTTCTTCTTCCAGAGATATTTGCATCCCGAATCAGAGCAAAAGCCGTCGC 1538
|||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1394 GGTACCTGCTCTTCTTCTTCCAGAGATATTCGCATCCCGAATCAGAGCTAAAGCAGTCGC 1453
Query 1539 TCTTTCTCTCGGCATGCACTGGATATCAAACTTTGTGATCGGACTATACTTCTTAAGCGT 1598
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1454 CCTTTCTCTTGGCATGCACTGGATATCAAACTTTGTGATTGGACTATACTTCTTAAGCGT 1513
Query 1599 TGTGACTAAATTCGGAATCAGCAGTGTCTACTTGGGTTTTGCTGGAGTCTGCGTCCTTGC 1658
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1514 TGTGACTAGATTTGGAATCAGCAGTGTCTACTTGGGTTTTGCCGGAGTCTGCGTCCTTGC 1573
Query 1659 GGTCCTCTACATTGCAGGAAACGTCGTCGAGACTAAAGGTCGATCACTGGAGGAAATAGA 1718
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1574 AGTCCTCTACATTGCAGGAAACGTCGTAGAGACTAAAGGGCGATCACTGGAGGAAATAGA 1633
Query 1719 GCTTGCTCTTAC-ATCTGGAGCTTGAAATTAAACAAAA--GAAATC 1761
|||||||||||| | |||||| ||||| ||||| |||| ||||||
Sbjct 1634 GCTTGCTCTTACCA-CTGGAGTTTGAATTTAAAAAAAAAAGAAATC 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70619314230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5