BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G16160.1

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488468 jgi|Araly1|488468|fgenesh2_kg.6__1602__AT5G16160.1         590    4e-168


> Ahg488468 jgi|Araly1|488468|fgenesh2_kg.6__1602__AT5G16160.1
Length=457

 Score =  590 bits (319),  Expect = 4e-168
 Identities = 424/472 (90%), Gaps = 18/472 (4%)
 Strand=Plus/Plus

Query  16   GCCGACGGAGAAGCCATGGCGACGAC---GAGGACAAACGAGGAAATTGACAGAGAAGCA  72
            ||||||||||||||||||||||||||   |||||||| ||||||||| ||||||||||||
Sbjct  1    GCCGACGGAGAAGCCATGGCGACGACGAGGAGGACAAGCGAGGAAATCGACAGAGAAGCA  60

Query  73   GAGGAGAATCGAAAAGAAGCTCTATTAGCTTCAACACTATCTCTTCAACCCAATTTTAAT  132
            ||||||||||| ||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct  61   GAGGAGAATCGTAAAGAAGCTTTATTAGCCTCTACACTATCTCTTCAACCCAATTTTAAT  120

Query  133  CGATCCAACCTCACCCAGAAACAAATTTCCAAATTACAGGAGCTACACAAGAGACGTATG  192
            || |||||| |||  |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  CGTTCCAACGTCAGTCAGAAACAAATTTCGAAATTACAGGAGCTACACAAGAGACGTATG  180

Query  193  CAAATAAAAGCTAATGCAAAGATTCATAAGAAGAAACCTAAAGCGAGCAAGAATTCTCAG  252
            ||||| ||||| ||| |||||||||||||||| |  ||||||||||||||||||||||||
Sbjct  181  CAAATTAAAGCCAATACAAAGATTCATAAGAA-A--CCTAAAGCGAGCAAGAATTCTCAG  237

Query  253  AGTAAAGCGATCGAAGATGGCGAAAGCTCTAAAAAGTTGAAAGAACCAActtcttcttct  312
            | |    | |   ||||||| ||||||||||| |||||||||||| |||||||  ||| |
Sbjct  238  A-T----C-A---AAGATGGGGAAAGCTCTAACAAGTTGAAAGAATCAACTTC--CTT-T  285

Query  313  tcttctACCTTAGAAGAACAGAATCATAACAAGACAGTAGTCACAGTACCGAAGAAGCCA  372
            ||||||||||||||||||||||||||||  |||||| ||| ||||  ||| |||||||||
Sbjct  286  TCTTCTACCTTAGAAGAACAGAATCATAGTAAGACACTAGGCACAACACCAAAGAAGCCA  345

Query  373  CAAAAACTGTTTTGGGGGCTAGATACCAGGGAGAGGTGGGAAAGGAAAGCCAACATGTAG  432
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  346  CAAAAACTGTTTTGGGGGCTAGATACTAGGGAAAGGTGGGAAAGGAAAGCCAACATGTAG  405

Query  433  TGGTCATGAAAAGATTTCTCGTTATTGATAACGTCGTCCATTGTACAATTTA  484
             |||||||||  |||||||||||||||||||| |||||||||||||||||||
Sbjct  406  CGGTCATGAAGCGATTTCTCGTTATTGATAACTTCGTCCATTGTACAATTTA  457



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20069839814


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5