BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16170.1
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326063 jgi|Araly1|326063|fgenesh1_pm.C_scaffold_6001283 1908 0.0
> Ahg326063 jgi|Araly1|326063|fgenesh1_pm.C_scaffold_6001283
Length=1221
Score = 1908 bits (1033), Expect = 0.0
Identities = 1172/1237 (95%), Gaps = 17/1237 (1%)
Strand=Plus/Plus
Query 60 ATGAGCATTAGT-GATCATAAGAGCAAGAAAGAAGAAGAACAGTACCCAATGATCACAAA 118
||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGGCATTA-TAGATCATAAGAGCAAGAAAGAAGAAGAACAGTACCCAATGATCTCAAA 59
Query 119 GCCCTTGAGATTGATTCTCTTACAAAAGGGAAGTTATGTCTTAAGCTCACTCTTTTTTGT 178
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 GCCCTTGAGATTTATTCTCTTACAAAAGGGAAGTTATGTCTTAAGCTCACTCTTCTTTGT 119
Query 179 ATTCGGTTTCTCGGTTGGTCTCTTCCTTTGTCTGCAACTAAAAGCCGTACACATGTCTAC 238
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATTCGGTTTCTCGGTCGGTCTCTTCCTTTGTCTGCAACTAAAAGCCGTACACATGTCTAC 179
Query 239 GACGACGACACAACGACAACCCTTATGGTCTACCTTATTATTCAACCACACGGTCCACAC 298
||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||
Sbjct 180 GACGACGACACAACGACAACCCTTATGGTCTACATTACTATTCAACCATA----CCACA- 234
Query 299 CACAGAGATGGATATCAAACAAGAGTTGCAACTACAAGTACTTCAACACAACATGAGTGA 358
|| |||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 235 -AC---GATGGACATCAAACAAGAGTTGCAACTAAAAACACTTCAACACAACATGAGTGA 290
Query 359 TCAAGAACTCTTCACCAAGGCCTCGTCATTATCATCACCAACATCATCCTTATCGTCATC 418
|||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||
Sbjct 291 TCAAGAACTCTTCACCAAGGTCTCGTCATTATCATCACCAACATCAT-C--ATCG---TC 344
Query 419 ATCATGGTTAGGGAGGAGACATAATAATGATGGGAAGATGGCTGTGAAGGTGGCTTTCAT 478
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 345 ATCATGGTTAGGGAGGAGACATAATAATGATGGGAAGATGGTTGTGAAGGTGGCTTTCAT 404
Query 479 GTTCATGACAGGTGGAAGACTCCCATTGGCTGGCTTGTGGGAAAAGTTCTTTGAAGGACA 538
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 405 GTTCATGACAGGTGGCAGACTCCCATTGGCTGGCTTGTGGGAGAAGTTCTTTGAAGGACA 464
Query 539 TGAAGGGTTTTATTCCATATATGTTCATACTAATCCATCTTTTCAAGATTCTTTCCCCGA 598
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 465 TGAAGGGTTTTATTCCATATATGTCCATACTAATCCATCCTTTCAAGATTCTTTCCCAGA 524
Query 599 AACTTCCGTCTTCTATTCAAGAAGAATCCCAAGTCAGCCGGTGTATTGGGGAACATCATC 658
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 525 AACTTCCATCTTCTACTCAAGAAGAATCCCAAGCCAGCCGGTGTATTGGGGAACATCATC 584
Query 659 AATGGTAGACGCAGAGAAAAGACTATTAGCCAACGCACTTCTCGACGAATCCAACCAAAG 718
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 585 AATGGTAGACGCAGAGAAAAGACTATTAGCCAACGCACTTCTAGACGAATCGAACCAAAG 644
Query 719 ATTCGTCCTCTTGTCCGATTCTTGCATCCCACTCTACAATTTCACAACCATCTACGATTA 778
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 645 ATTCGTCCTCCTGTCCGATTCTTGCATTCCACTCTACAATTTCACAACAATCTACGATTA 704
Query 779 CTTAACCGGCACCAATCTCAGCTTCATTGGCTCATTCGACGACCCAAGAAAATCCGGTAG 838
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 705 CTTAACCGGCACCAATCTCAGTTTTATTGGTTCATTCGACGACCCAAGAAAATCCGGTAG 764
Query 839 AGGCCGTTACAACCACACAATGTATCCACACATCAACATCACACATTGGAGAAAAGGATC 898
|||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 765 AGGCCGTTACAATCACAAAATGTATCCACAAATCAACATCACACATTGGAGAAAAGGATC 824
Query 899 ACAGTGGTTTGAAACAACTCGAGAACTTGCTCTTCATATAATCGAAGACACGGTTTACTA 958
||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct 825 ACAATGGTTTGAAACAACTAGAGAACTTGCTCTTCATATTATCGCAGACACGGTTTACTA 884
Query 959 CAAAATATTCGATCAACATTGTAAACCGCCTTGTTACATGGACGAGCATTATATCCCAAC 1018
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CAGAGTATTCGATGAACATTGTAAACCGCCTTGTTACATGGACGAGCATTATATCCCAAC 944
Query 1019 TCTCGTTCACATGTTGCATGGAGAGATGAGCGCTAACCGGACCTTGACGTGGGTTGATTG 1078
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 945 TCTTGTTCACATGTTGCATGGGGAGATGAGCGCTAACCGGACCTTGACGTGGGTTGATTG 1004
Query 1079 GTCCAAAGCTGGTCCACATCCTGGCCGGTTTATTTGGCCTGATATAACCGATGAGTTTCT 1138
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GTCCAAAGCCGGTCCACATCCTGGCCGGTTTATTTGGCCTGATATAACCGATGAGTTTCT 1064
Query 1139 TAACCGAATCCGGTTTAAGGAGGAGTGTGTCTATTTTGGCCGTGGTGGAGAGAATGTTAC 1198
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1065 TAACCGAATCCGGTTTAAGGAGGAGTGTGTCTATTATGGCCGTGGTGGAGAGAATGTTAC 1124
Query 1199 AACTTCCAAGTGTTTTTTATTTGCGAGGAAATTTACAGCCGAAACTTTAGAACCATTGTT 1258
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1125 AACTTCCAAGTGTTTTTTATTTGCGAGGAAATTTACAGCCGAAACATTAGAGCCTTTGTT 1184
Query 1259 AAGAATTTCGCCAATAGTTCTTGGTTTTGGTCCATAG 1295
|||||||||||||||||||||||| ||||||||||||
Sbjct 1185 AAGAATTTCGCCAATAGTTCTTGGATTTGGTCCATAG 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50970340029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5