BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16180.1
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941110 jgi|Araly1|941110|scaffold_601654.1 2431 0.0
> Ahg941110 jgi|Araly1|941110|scaffold_601654.1
Length=2227
Score = 2431 bits (1316), Expect = 0.0
Identities = 1598/1728 (92%), Gaps = 43/1728 (2%)
Strand=Plus/Plus
Query 95 AGTTGCAGACTTTTACTCAAATGCTAAAC-TCTCTCTTCCTCTCGGCGCGAGCTTTTCCA 153
||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||| ||||
Sbjct 1 AGTTGCAGACTTTTAATCAAATGCT-AACTTCTCTCCTCCTCTCGGCGCGAGCTTATCCA 59
Query 154 TCTTTGATC----A------C-T-AACTCT--TC----CTC-TC---GGCGCGCCAAAAG 191
||| ||||| | | | ||| || || | | || ||| || ||||
Sbjct 60 TCTCTGATCATAAATTCCTCCTTAAACCCTAATCAAAACCCTTCAAATGCG-GCTAAAA- 117
Query 192 TT-CCCAATTTGATCAGTTTAGGGAAAACAGAGGAGTCTCTGATGCTGCGATTAAGGTTC 250
|| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 118 TTCCCCAATTTGATCAATTTAGGGAAAACAGAGGACTCTCTGATGCTGCGATTAAGGTTC 177
Query 251 CTACTGCTCCATGGATGAAAGGTCCTCTCTTGCTTCGACCCGATGAGATTCTCGACACTA 310
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 178 CTACTGCTCCATGGATGAAAGGTCCTCTCTTGCTTCGACCCGATGAGATTGTCGACACTG 237
Query 311 AGAAGAGAAACAAGCCACGGAAAGTTGAAGAGAAGACGTTCAAGGCGTTGAATCGTAGAG 370
||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 238 AGAAGAGGAACAAGCCACGAAAAGTTGAAGAGAAGACGTTTAAGGCGTTGAACCGTAGAG 297
Query 371 AGAGTGGTGTCAGAGGAAAGAAAGCGATGAAGAAGATCGTGCGTAACGTTGAAAAGCTCG 430
||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 298 AGAGTGGTGTCAGGGGGAAGAAAGCGATGAAGAAAATCGTGCGTAACGTTGAAAAGCTTG 357
Query 431 ATGAAGATAGTGATTCTGAAGAAACCCAGATGGATGATTTGAGCGAATTCGAGTATTTAG 490
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGAAGGCAGTGATTCTGAAGAAACCCAGATGGATGATTTGAGCGAATTCGAGTATTTAG 417
Query 491 GTCGAATTGAGGAGAAAGTTGAGTCCAAGGATAGATTTGGCGGGAAAATGCCATGGGAGA 550
|||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 418 GTCGAATTTCGGAGAAAATTGAGTCCAAGGATAGATTTGGCGGGAAAATGCCTTGGGATA 477
Query 551 GAGAAGAAGAGAGGTTTATATTAAGGAGGATGAAGAAGGAGAGCGTTCCGACTACTGCTG 610
|||||||||||||||||||||| |||||| |||||||||| | ||||||||||| ||||
Sbjct 478 GAGAAGAAGAGAGGTTTATATTGCGGAGGACGAAGAAGGAGGGAGTTCCGACTACGGCTG 537
Query 611 AGCTTATTCTTGACGAGGGATTGTTGAATAGACTGAGACGTGAAGCTTCGAAGATGAGAA 670
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGCTTATTCTTGACGAAGGATTGTTGAATAGACTGAGACGTGAAGCTTCGAAGATGAGAA 597
Query 671 AATGGGTGAATGTGAGGAAAGCAGGTGTTACTGAGTTAGTTGTGAATAAGATTAAATCGA 730
|||||||||||||||| |||||||||||||||||| |||||||||| |||||| || ||
Sbjct 598 AATGGGTGAATGTGAGAAAAGCAGGTGTTACTGAGACAGTTGTGAATGAGATTAGATTGA 657
Query 731 TGTGGAAGTTGAATGAGCTTGCTATGGTGAGATTTGATGTTCCTCTGTGTCGAAACATGG 790
| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 658 TCTGGAAGTTGAAGGAGCTTGCTATGGTCAGATTTGATGTTCCTCTGTGTCGGAATATGG 717
Query 791 AGCGAGCTCAAGAGATTATAGAGATGAAGACTGGAGGCTTGGTTGTGTTAAGCAAGAAGG 850
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AACGAGCTCAAGAGATTATAGAGATGAAGACTGGAGGCTTGGTTGTGTTAAGCAAGAAGG 777
Query 851 AGTTTTTAGTTGTTTATCGAGGAGGACCGAGTTATTCATC--A-G--A---G----GGAC 898
| ||| |||||||||||||||||||||||||||||||||| | | | | ||||
Sbjct 778 AATTTGTAGTTGTTTATCGAGGAGGACCGAGTTATTCATCAGAGGAAACCCGTTCTGGAC 837
Query 899 AAGATGAGATTAGCTCATCATTGTACGAGAGAGAAGCTGATAGGTTACTGGATGGTTTGG 958
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 838 AAGATGAGATTAGCTCATCATTGTACGAGAGAGAAGCTGATAGGTTATTGGATGGTTTGG 897
Query 959 GACCTAGATATATGGATTGGTGGATGAGAAGACCGTTTCCCGTTGATGCTGACTTGCTTC 1018
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 898 GACCTCGATATATGGATTGGTGGATGAGAAGACCGTTTCCAGTTGATGCTGACTTGCTTC 957
Query 1019 CTGAAGTTGTTAATGGATATATGACTCCATCTAGACGTTGTCCACCAAACACTAGAGCTA 1078
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTGAAGTGGTTAATGGATATAGGACTCCATCTAGACGTTGTCCACCAAACACTAGAGCTA 1017
Query 1079 AGCTAACCGATGAAGAGCTTACCTACTTGAGAAACATTGCTCAACCTTTACCGTTTCATT 1138
|| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 AGTTAAGCGATGAAGAGCTTACCTACTTGAGAAACATTGCTCAAGCTTTACCGTTTCATT 1077
Query 1139 TCGTCCTTGGGAGGAACTATGGGCTTCAAGGTTTAGCTTCCGCTATCGTGAAACTATGGG 1198
||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1078 TCGTCCTTGGGAGGAACCACGGGCTTCAAGGTTTAGCTTCCGCTATTGTGAAGCTATGGG 1137
Query 1199 AGAAATGTATTATTGCAAAGATTGCAATCAAATGGGGAGCTCTCAATACAAACAATGAGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AGAAATGTATTATTGCAAAGATTGCAATCAAATGGGGAGCTCTCAATACAAACAATGAGG 1197
Query 1259 AAATGGCAGATGAATTGAGGTATCTCACTGGCGGTGTTCTGATTCTACGCAACAAATACT 1318
|||||||||||||| ||| | |||||||||| || |||||||| ||||||||||||||||
Sbjct 1198 AAATGGCAGATGAACTGAAGCATCTCACTGGAGGAGTTCTGATACTACGCAACAAATACT 1257
Query 1319 TGATAGTACTATACAGAGGCAAGGACTTCCTTTCTGATGAGGTCGCGGATTTGGTTGAGG 1378
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1258 TGATAGTACTTTACAGAGGCAAGGACTTCCTTTCTGATGAAGTCGCGGATTTGGTTGATG 1317
Query 1379 ACAGAGAGAGATTACTCAGCAG-ATACCAACATTTTGAAGAAACTAAACGCGAGAGCGAT 1437
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 1318 ACAGAGAGAGATTACTCAG-AGGATATCAACATTTTGAAGAAACTAAACGCGAGAGCGAT 1376
Query 1438 ATAGAACTCTTGGAGGTGGTAACAAATGGTAAACAGTTGAAGGAAACAAACAAAAGTGGA 1497
|||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 1377 ATAGAAATCTTGGAGGTGGTAACAAATGGTAAACATTTGAAGGAATCAATCAAAAGTGGA 1436
Query 1498 ACTTTATTAGAGTTTCAAGAACTGCAAAGAAAATTCGGAGAAATGGACCCGAGAAACCTA 1557
||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1437 ACTTTATCAGAGTTTCAAGAACTTCAAAGAAAATTCGGAGAAATGGAGACGAGAAACCTA 1496
Query 1558 GAGACTGAAGCTGAGAAAGCAAGACTAGAGAAGGAACTCAAAAGCCAAGAACACAAGCTT 1617
||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 1497 GAGACTGAAGCTGAGAAAGCAAGACTAGAGAAGGAGCTCAGAAGCCAAGAACGCAAGCTT 1556
Query 1618 TCCATACTAAAATCAAAGATAGAGAAATCAA-ATATGGAGTTGTTTAAATTAAATTCTTT 1676
||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 1557 TCCATTCTAAAATCAAAGATAGAGAAATCAACA-ATGGAGTTGTTTAAATTGAATTCTTT 1615
Query 1677 GTGGAAACCATCGGAGGGAGATGATGACATCGAGATATTGACTAATGAAGAAAGAGAATG 1736
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1616 GTGGAAACCATCGGAGCGAGATGATGACATCGAGATATTTACTAATGAAGAAAGAGAATG 1675
Query 1737 CTTGAGAAGAATAGGGCTGAAGATGAACAGCAGCTTAGTTCTTGGTAG 1784
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1676 CTTGAGAAGAATAGGGCTGAAGATGAGTAGCAGCTTAGTTCTTGGTAG 1723
Score = 593 bits (321), Expect = 1e-168
Identities = 363/384 (95%), Gaps = 0/384 (0%)
Strand=Plus/Plus
Query 1780 GGTAGAAGAGGAGTCTTTTTTGGTGTAATGGAAGGTCTACATCAGCATTGGAAGCACAGG 1839
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1821 GGTAGAAGAGGAGTCTTTGTTGGTATAATGGAAGGTCTACATCAGCATTGGAAGCACAGG 1880
Query 1840 GAAGTAGCAAAAGTGATCACGATGCAGAAGCTTTTCTCCAGAGTTGTCTACACAGCAAAA 1899
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1881 GAGGTAGCAAAAGTGATCACGATGCAGAAGATTTTCTCCAGAGTTGTCTACACAGCGAAA 1940
Query 1900 GCGCTTGAAACAGAGAGCAATGGAGTACTAATCTCAATCGAAAAACTTAAAGAAGGGCAC 1959
| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1941 TCACTTGAAGCAGAGAGCAATGGAGTACTAATCTCAATCGAAAAACTTAAAGAAGGACAC 2000
Query 1960 GCCATACTCATATACCGTGGCAAGAACTACAAACGTCCTTCATCGAAACTGATGGCACAG 2019
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2001 GCGATACTCATATACCGTGGCAAGAATTACAAACGTCCTTCATCAAAACTGATGGCACAG 2060
Query 2020 AATCTTTTGACGAAAAGAAAAGCATTGCAACGATCTGTTGTGATGCAGCGACTCGGCTCA 2079
||||||||||||||||||||||| || ||| ||||||||| ||||||||| |||||||||
Sbjct 2061 AATCTTTTGACGAAAAGAAAAGCGTTACAAAGATCTGTTGCGATGCAGCGGCTCGGCTCA 2120
Query 2080 CTGAAGTTCTTTGCTTACCagagagagagagCAATAGAAGATTTGAAGGTGAGTTTGGTA 2139
||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 2121 CTGAAGTTCTTTGCTTATCAGAGAGAGAGAGTAATAGAAGATTTGAAGCTGAGTGTGGTA 2180
Query 2140 AATCTTCAAGACTCTGCTTTCTGA 2163
||||||||||||||||||||||||
Sbjct 2181 AATCTTCAAGACTCTGCTTTCTGA 2204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81398853565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5