BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16190.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488470 jgi|Araly1|488470|fgenesh2_kg.6__1604__AT5G16190.1 2128 0.0
Ahg313253 jgi|Araly1|313253|fgenesh1_pm.C_scaffold_1002033 1221 0.0
Ahg905719 jgi|Araly1|905719|Al_scaffold_0003_2847 468 6e-131
> Ahg488470 jgi|Araly1|488470|fgenesh2_kg.6__1604__AT5G16190.1
Length=1332
Score = 2128 bits (1152), Expect = 0.0
Identities = 1274/1334 (96%), Gaps = 4/1334 (0%)
Strand=Plus/Plus
Query 1 ATGCAAGAGGACTTGGAGCTCGGAAATCAAAACTTTCCCATGGTTCTTGTCCAAATCCCA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAAGAGGACATGGAGCTCGGAAATCAAAACTTTCCCATGGTTCTTGTCCAAATCCCA 60
Query 61 ATGTACAACGAACGAGAGGTGTTTAAGTTATCCATTGGTGCTGCTTGCAGACTCATATGG 120
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 ATGTACAATGAACGAGAGGTGTTTCAGTTATCCATTGGTGCTGCTTGCAGACTCATATGG 120
Query 121 CCATTGGATCGACTAATCGTTCAAGTTTTAGATGATTCCACTGATCCCACCATCATGGAA 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCATTGGAGCGACTAATCGTTCAAGTTTTAGATGATTCCACTGATCCCACCATCATGGAA 180
Query 181 ATGGT-AAGCACAGAGTGTGGAAAATGGGCAACCAAAGGCATAAACATAAAATGTGAGAG 239
||||| || || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATGGTGAA-CATAGAGTGTGGAAAATGGGCAACCAAAGGCATTAACATAAAATGTGAGAG 239
Query 240 GAGAGACAATAGAAATGGCTATAAGGCTGGAGCTCTTAAACAAGGTATGAGGCATAGTTA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGAGATAATAGAAATGGCTATAAGGCTGGAGCTCTTAAACAAGGTATGAGGCATAGTTA 299
Query 300 CGTCAAAACATGCACCTACATTGCAATCTTCGATGCTGATTTTCAGCCAGAGCCCGACTA 359
|||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||
Sbjct 300 CGTCAAAACATGCACCTACATTGCAATCTTCGATGCCGACTTCCAGCCAGAGCCTGACTA 359
Query 360 CCT-CGAACGCACTGTCCCATTTCTTATCCACAATCCCGAACTCGCTCTTGTTCAAGCTC 418
||| | |||| ||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 360 CCTAC-AACGGACTGTTCCATTTCTTATCCACAATTCCGAGCTCGCTCTTGTTCAAGCTC 418
Query 419 GATGGAAATTTGTGAACGCAAAGAAGTGCTTGATGACTAGGATGCAGGAGATGTCCCTCA 478
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GATGGAAATTTGTGAATGCGAAGAAGTGCTTGATGACTAGGATGCAGGAGATGTCCCTCA 478
Query 479 ATTACCATTTCACGGCAGAGCAAGAATCCGGATCCACTAGACATGCCTTCTTTGGCTTTA 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 ATTACCATTTCACGGCAGAGCAAGAATCCGGATCCACTAGACATGCCTTCTTTGGCTTCA 538
Query 539 ATGGGACTGCGGGTGTATGGAGACTGGCGGCGATGGAAGAAGCTGGTGGTTGGAAAGACC 598
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 539 ATGGGACTGCTGGTGTATGGAGACTGGCGGCAATGGAAGAAGCCGGTGGTTGGAAAGACC 598
Query 599 GGACCACCGTAGAGGACATGGACTTGGCCGTTCGTGTAGGTCTACACGGCTGGAAATTTG 658
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 599 GAACCACCGTAGAAGACATGGACTTGGCCGTTCGTGTTGGTCTACATGGCTGGAAATTTG 658
Query 659 TCTTTGTCAACGATGTTTCGGTGAAAAGTGAGCTACCAAGCCAATTTAAGGCATTCAGAT 718
|||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 659 TCTTCGTCAATGATGTTGCGGTGAAAAGTGAGCTACCAAGCCAATTTAAGGCTTTCAGGT 718
Query 719 TCCAGCAACATCGATGGTCATGCGGTCCAGCTAATCTCTTCAGAAAAATGACTATGGAAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCCAGCAACATCGATGGTCATGCGGTCCAGCTAATCTCTTCAGAAAAATGACTATGGAAA 778
Query 779 TTATTCGCAATAAGAGAGTGACGATTTGGAAGAAATTGTATGTGATCTATAGTTTCTTTT 838
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 779 TTATTCGCAATAAGAGAGTGACGATTTGGAAGAAATTTTATGTGATCTACAGTTTCTTTT 838
Query 839 TCGTAAGGAAGATCATAGTCCATTTCTTCACTTTCTTCTTCTATTGTTTCATTCTTCCTA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCGTAAGGAAGATCATAGTCCATTTCTTCACTTTCTTCTTCTATTGTTTCATTCTTCCTA 898
Query 899 CGAGCGTATTCTTTCCCGAAGTCAACATTCCGACTTGGTCAACCGTTTATTTTCCTTTTA 958
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 899 TGAGCGTATTCTTTCCCGAAGTCAACATTCCGACTTGGTCAACTGTTTACTTTCCTTTTA 958
Query 959 TGATCACTCTATTCAATGCCATTGCCACACCAAGATCTTTCTACCTCGTGATTTTTTGGG 1018
||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 959 TGATCACTCTATTCAATGCCATTGCGACACCGCGATCTTTTTACCTCGTGATTTTTTGGG 1018
Query 1019 TCTTATTCGAGAATGTAATGGCTATGCATCGGACCAAAGGCACTTTCATCGGTTTACTTG 1078
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCTTATTCGAAAATGTAATGGCTATGCATCGGACCAAAGGCACTTTCATCGGTTTACTTG 1078
Query 1079 AAGGAGGGAGAGTTAACGAATGGGTCGTCACCGAGAAATTAGGTGATGCGCTTGAGACTA 1138
||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1079 AAGGAGGGAGAGTGAACGAATGGGTCGTCACCGAGAAATTAGGAGATGCTCTCGAGACTA 1138
Query 1139 AGTTACTTCCCCAAGTAAGAAAACCTCGCAACGGGTTTCTCGAAAGGATAAACTCAAAAG 1198
|||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||| |
Sbjct 1139 AGTTACTTCCCCAAGTCAGAAAACCTCGCTATGGGTTTCTCGACAGGATAAACTCAAAGG 1198
Query 1199 AGATGATGGTGGGGATATACATATTGTGCTGTGCATCATATAACCTTGTCTTTGGGAAGA 1258
|||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1199 AGATGATGGTCGGGATATACATATTGTGTTGTGCCTCCTATAACCTTGTCTTTGGGAAGA 1258
Query 1259 CAGTGTTATATATCTATCTTTACATGCAGGCTCTTGCTTTTATTATTGCCGGAATTGGTT 1318
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATTGTTATATATTTATCTTTACATGCAGGCTCTTGCTTTTATTATTGCCGGAATTGGTT 1318
Query 1319 TTATAGGAACTTGA 1332
|| |||||||||||
Sbjct 1319 TTGTAGGAACTTGA 1332
> Ahg313253 jgi|Araly1|313253|fgenesh1_pm.C_scaffold_1002033
Length=1659
Score = 1221 bits (661), Expect = 0.0
Identities = 1121/1342 (84%), Gaps = 36/1342 (3%)
Strand=Plus/Plus
Query 7 GAGGAC-TTGGAGCTCGGAAATCAAAACTTTCCCATGGTTCTTGTCCAAATCCCAATGTA 65
|||||| || ||||||||| || ||| || |||||||| ||||| ||||| ||||||||
Sbjct 334 GAGGACATT-GAGCTCGGACATGAAACCTACCCCATGGTCCTTGTTCAAATTCCAATGTA 392
Query 66 CAACGAACGAGAGGT-GTTTAAGTTATCCATTGGTGCTGCT-TGCAGACTCATATGGCCA 123
||||||| |||||| || || ||||| || ||||||| | || ||||| || ||||||
Sbjct 393 CAACGAAAAAGAGGTCCTTCAA-TTATCTATAGGTGCTG-TATGTAGACTAATCTGGCCA 450
Query 124 TTGGATCGACTAATCGTTCAAGTTTTAGATGATTCCACTGATCCCACCATCATGGAAATG 183
|||||||| ||||| ||||||||| |||||||||||||||||| ||||| | || ||
Sbjct 451 TTGGATCGCCTAATTGTTCAAGTTCTAGATGATTCCACTGATCAAACCATGAAGGGGCTG 510
Query 184 GT-AAGCACAGAGTGTGGAAAATGGGCAACCAAAGGCATAAACATAAAATGTGAGAGGAG 242
|| || ||||||||||| |||||||| || ||||||| |||| ||||| |||||||||||
Sbjct 511 GTGAA-CACAGAGTGTGCAAAATGGGAAAGCAAAGGCGTAAATATAAAGTGTGAGAGGAG 569
Query 243 AGACAATAGAAATGGCTATAAGGCTGGAGCTCTTAAACAAGGTATGAGGCATAGTTACGT 302
|||||| |||||||||||||| || ||||||||||||||||| |||| ||| | ||||||
Sbjct 570 AGACAACAGAAATGGCTATAAAGCCGGAGCTCTTAAACAAGGCATGAAGCACAATTACGT 629
Query 303 CAAAAC-ATGCACCTACATTG-CAATCTTCGATGCTGATTTTCAGCCAGAGCCCGACTAC 360
|| | ||||| ||| ||| | ||||| || || || ||||| || ||||| || |||
Sbjct 630 -GAAGCTATGCAACTATGTTGTC-ATCTTTGACGCAGACTTTCAACCGGAGCCTGATTAC 687
Query 361 CTCGAACGCACTGTCCCATTTCTTATCCACAATCCCGAACTCGCTCTTGTTCAAGCTCGA 420
||| ||||| |||||||||| || |||| || ||||| |||||||||||||||| ||
Sbjct 688 CTCCAACGCTCTGTCCCATTCCTCGTCCATAACCCCGAGGTCGCTCTTGTTCAAGCCCGT 747
Query 421 TGGAAATTTGTGAACGCAAAGAAGTGCTTGATGACTAGGATGCAGGAGATGTCCCTCAAT 480
|||| ||| |||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 748 TGGAGATTCATGAACGCAAACAAGTGCTTGATGACGAGGATGCAAGAGATGTCCCTCAAC 807
Query 481 TACCATTTCACGGCAGAGCAAGAATCCGGATCCACTAGACATGCCTTCTTTGGCTTTAAT 540
||||| |||| |||||| |||||||| |||||||||||||||||||||||| |||| |||
Sbjct 808 TACCACTTCATGGCAGAACAAGAATCTGGATCCACTAGACATGCCTTCTTTAGCTTCAAT 867
Query 541 GGGACTGCGGGTGTATGGAGACTGGCGGCGATGGAAGAAGCTGGTGGTTGGAAAGACCGG 600
|| |||||||||||||||||| |||| ||||||||||||||||| || ||| | ||||||
Sbjct 868 GGAACTGCGGGTGTATGGAGAATGGCCGCGATGGAAGAAGCTGGAGGATGGCATGACCGG 927
Query 601 ACCACCGTAGAGGACATGGACTTGGCCGTTCGTG-TAGGTCTACACGGCTGGAAATTTGT 659
||||| |||||||||||||||||||||||||||| | ||||| | |||||||||||||||
Sbjct 928 ACCACTGTAGAGGACATGGACTTGGCCGTTCGTGCT-GGTCTTCTCGGCTGGAAATTTGT 986
Query 660 CTTTGTCAACGATGTTTCGGTGAAAAGTGAGCTACCAAGCCAATTTAAGGCATTCAGATT 719
|||| |||| || | |||||||||| || |||||||| |||||||||| ||||||||
Sbjct 987 CTTTCTCAATGACCTCACGGTGAAAAGCGAATTACCAAGCAAATTTAAGGCCTTCAGATT 1046
Query 720 CCAGCAACATCGATGGTCATGCGGTCCAGCTAATCTCTTCAGAAAAATGACTATGGAAAT 779
|||||||||||||||||| || |||||||||||||||||||| ||||||| |||||| ||
Sbjct 1047 CCAGCAACATCGATGGTCTTGTGGTCCAGCTAATCTCTTCAGGAAAATGATTATGGAGAT 1106
Query 780 TATTCGCAATAAGAGAGTGACGATTTGGAAGAAATTGTATGTGATCTATAGTTTCTTTTT 839
||||||||||||||||||||||||||||||||| |||||| || |||| || ||||||||
Sbjct 1107 TATTCGCAATAAGAGAGTGACGATTTGGAAGAAGTTGTATTTGGTCTACAGCTTCTTTTT 1166
Query 840 CGTAAGGAAGATCATAGTCCATTTCTTCACTTTCTTC-TTCTATTGT-TTCATTCTTCCT 897
| || |||||||||| ||||| | |||||| || ||| ||||| || || |||||||||
Sbjct 1167 CTTACGGAAGATCATCGTCCACTGCTTCACGTT-TTCGTTCTACTGCGTT-ATTCTTCCT 1224
Query 898 ACGAGCGTATTCTTTCCCGAAGTCAACATTCC-GACTTGGTCAACCGTTTATTTTCCTTT 956
|| || || ||||| ||||||||||||||||| | |||||||||| |||| |||| |
Sbjct 1225 ACAAGTGTCTTCTTCCCCGAAGTCAACATTCCAG-CTTGGTCAACTTTTTACATTCCGTC 1283
Query 957 TATGATCACTCTATTCAAT-GCCATTGCCACACCAAGATCTTTCTACCTCGTGATTTTTT 1015
|||||||||||| | || | | |||||| ||||||||||| |||||| ||||||| ||||
Sbjct 1284 TATGATCACTCTCTGCA-TCGTCATTGCGACACCAAGATCATTCTACTTCGTGATATTTT 1342
Query 1016 GGGTCTTATTCGAGAATGTAATGGCTATGCATCGGACCAAAGGCACTTTCATCGGTTTAC 1075
|| |||| || || || |||||| ||||||| ||||| || || ||||||||||| |||
Sbjct 1343 GGATCTTGTTTGAAAACGTAATGTCTATGCACCGGACGAAGGGAACTTTCATCGGCATAC 1402
Query 1076 TTGAAGGAGGGAGAGTTAACGAATGGGTCGTCACCGAGAAATTAGGTGATGCGCTTGAGA 1135
| ||| | ||||||||||||||||| ||||| ||||||||||| ||||| ||| |||
Sbjct 1403 TCGAAAAACAAAGAGTTAACGAATGGGTTGTCACTGAGAAATTAGGAGATGCTCTTAAGA 1462
Query 1136 CTAAGTTACTTCCCCA-AGTAAGAAAACCTCGCAACGGGTTTCTCGAAAG-GATAAACTC 1193
||||| ||||||| | | | |||||||| | ||||||||||| ||||| | |||||||
Sbjct 1463 CTAAGCTACTTCCTCGGATTG-GAAAACCTAGTAACGGGTTTCTTGAAAGAG-TAAACTC 1520
Query 1194 AAAAGAGATGATGGTGGGGATATACATATTGTGCTGTGCAT-CATATA-ACCTTGTCTTT 1251
|| ||| | ||||||||||||||||| ||||| ||||| | | ||| || || |||||
Sbjct 1521 CAAGGAGGTAATGGTGGGGATATACATCTTGTGTTGTGCTTGC-TATGGACTTT-TCTTT 1578
Query 1252 GGGAAGACAGTGTTATATATCTATCT-TTACATGCAGGCTCTTGCTTTTAT--TATTGCC 1308
||||| ||| |||||||| ||||||| || |||||| || |||||||| | ||| ||
Sbjct 1579 GGGAACACATTGTTATATCTCTATCTCTT-CATGCAAGCGGTTGCTTTTCTCGTAT--CC 1635
Query 1309 GGAATTGGTTTTATAGGAACTT 1330
||| |||| ||| | || ||||
Sbjct 1636 GGAGTTGGCTTTGTCGGCACTT 1657
> Ahg905719 jgi|Araly1|905719|Al_scaffold_0003_2847
Length=969
Score = 468 bits (253), Expect = 6e-131
Identities = 567/710 (80%), Gaps = 56/710 (8%)
Strand=Plus/Plus
Query 7 GAGGAC-TTGGAGCTCGGAAATCAAAACTTTCCCATGGTTCTTGTCCAAATCCCAATGTA 65
|||||| || ||||||||| || ||| || |||||||| ||||| ||||| ||||||||
Sbjct 252 GAGGACATT-GAGCTCGGACATGAAACCTACCCCATGGTCCTTGTTCAAATTCCAATGTA 310
Query 66 CAACGAACGAGAGGTGT-T-TA-A-G--TT-A-T-C--C----A--T-T-GGTGCTGCTT 106
||||||| |||||| | | || | | || | | | | | | | |||||||| |
Sbjct 311 CAACGAAAAAGAGGTATATCTACATGTATTCAGTCCTTCAATTATCTATAGGTGCTGCAT 370
Query 107 GCAGACTCATATGGCCATTGGATCGACTAATCGTTCAAGTTTTAGATGATTCCACTGATC 166
| ||||| || ||||||||||| || ||||| ||||||||| ||||||||||||||||||
Sbjct 371 GTAGACTAATCTGGCCATTGGACCGCCTAATTGTTCAAGTTCTAGATGATTCCACTGATC 430
Query 167 CCACCATC-------AT-G----GAA----A-----TGGT-AAGCACAGAGTGTGGAAAA 204
|||||| || | ||| | |||| || ||||||||||| |||
Sbjct 431 AAACCATCAAGAAGTATAGAACTGAATTTCAGGGGCTGGTGAA-CACAGAGTGTGCAAAG 489
Query 205 TGGGCAA-CCAAAGGCATAAACATAAAATGTGAGAGGAGAGACAATAGAAATGGCTATAA 263
|||| || || ||||| |||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 490 TGGGAAAGCC-AAGGCGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTATAA 548
Query 264 GGCTGGAGCTCTTAAACAAGGTATGAGGCATAGTTACGTCAAAAC-ATGCACCTACATTG 322
|| ||||||||||||||||| |||| ||| | ||||| || | ||||| || |||
Sbjct 549 AGCCGGAGCTCTTAAACAAGGCATGAAGCACAACTACGT-GAAGCTATGCAGATATGTTG 607
Query 323 -CAATCTTCGATGCTGATTTTCAGCCAGAGCCCGACTACCTCGAACGCACTGTCCCATTT 381
| ||||| || || || ||||| || ||||| || |||||| ||||| ||||||| ||
Sbjct 608 TC-ATCTTTGACGCAGACTTTCAACCGGAGCCTGATTACCTCCAACGCTCTGTCCCCTTC 666
Query 382 CTTATCCACAATCCCGAACTCGCTCTTGTTCAAGCTCGATGGAAATTTGTGAACGCAAAG 441
|| | || || ||||| |||||||||||||||| ||||||| ||| ||||| ||||
Sbjct 667 CTCGTTCATAACCCCGAGGTCGCTCTTGTTCAAGCCCGATGGAGATTCATGAACTCAAAC 726
Query 442 AAGTGCTTGATGACTAGGATGCAGGAGATGTCCCTCAATTACCATTTCACGGCAGAGCA- 500
|||||||||||||| |||||||| |||||||||||||| ||||| |||| ||| || |
Sbjct 727 AAGTGCTTGATGACGAGGATGCAAGAGATGTCCCTCAACTACCACTTCATGGCGGA-AAT 785
Query 501 AGAATCCGGATCCACTAGACATGCCTTCTTTGGCTTTAATGGGACTGCGGGTGTATGGAG 560
|||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 786 AGAATCTGGATCCACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAG 845
Query 561 ACTGG-CGGCGATGGAAGAAGCTGGTGGTTGGAAAGACCGGACCACCGTAGAGGACATGG 619
| ||| | || |||||||||||||| || ||| | ||||||||||| |||||||||||||
Sbjct 846 AATGGAC-GCAATGGAAGAAGCTGGAGGATGGCATGACCGGACCACTGTAGAGGACATGG 904
Query 620 ACTTGGCCGTTCGTG-TAGGTCTACACGGCTGGAAATTTGTCTTTGTCAA 668
||||||||||||||| | ||||| | ||||||||||||||||||| ||||
Sbjct 905 ACTTGGCCGTTCGTGCT-GGTCTTCTCGGCTGGAAATTTGTCTTTCTCAA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5