BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16200.1
Length=638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941112 jgi|Araly1|941112|scaffold_601656.1 708 0.0
> Ahg941112 jgi|Araly1|941112|scaffold_601656.1
Length=542
Score = 708 bits (383), Expect = 0.0
Identities = 483/529 (91%), Gaps = 15/529 (3%)
Strand=Plus/Plus
Query 32 GATCCACCGTTGAATCTCACGATGTCACTCTCCCGTCTACACAAATTCAAGCTCTTCGCG 91
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GATCCACCGTTGGATCTCACGATGTCACTCTCCGGTCTACACAAATTCAAGCTCTTCGCC 60
Query 92 GCACATCGTAGCTTGGAAGCGTCCACCGCGGGGAGTCCCACGATGAGTCCAACGAAGAGC 151
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 61 GCACATCGTAGCTTGGAAGCGTCCACCGCGGGGAACCCCACGATGAGTCCGACGAAGAGC 120
Query 152 CCTGTATTCAATCTCCGACGACGCAAAACCCTGCGGATGTTGTTCGATAAGAGCTCCGA- 210
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 121 CCTGTATTCAATCTCCGACGACGCAAAACCCTGCGGATGTTGTTCGAAAAGAGCTCTGAC 180
Query 211 TAGTCGCAGACGGAATCTCCGTCAGATCCTTGAGGAATCTCCGGAATCAGATGGAAATTC 270
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 T-GTCGCAGACGGAATCTCCGTCAGATCCTCGAGGAATCTCCGGAATCAGATGGAAATTC 239
Query 271 CGGGAATAAGAAGAGGGGAAACCACCGTGCTACTAGGCGTAAATTGAGAGAGCTCTTGGT 330
||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 CGGAAAAAAGAAGAGGGGAAACCACCGTG---CTAGGCGTAAATTGAGAGAGCTCTTGGT 296
Query 331 CACATCGCCGTCGCCGCCGTACAAAGGCAGAGAAGATATAGACGGAATTGGAGAAGAGAG 390
|||||||||||||||||||| | |||| |||||||| ||| |||||| | |||||||| |
Sbjct 297 CACATCGCCGTCGCCGCCGTGCGAAGGTAGAGAAGAGATATACGGAAATAGAGAAGAGGG 356
Query 391 AAGCGAGATTTCGCCGTTAAACGTCA-CT---T--CA---AACGGTGACGGCAGAGAGTT 441
||||||||||||||| ||| || || || | | ||||||||||||| ||||||
Sbjct 357 TAGCGAGATTTCGCCGGTAACCGCCAGCTCCGTTGCTTCTAACGGTGACGGCAAAGAGTT 416
Query 442 AACGGCTCGACGATTCGGTTCATCCGGTTCGGTTCAATCATTTCGGTTAAGGATTTTAAG 501
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 417 AACGGCTCGACGATTCGGTTCGTCCGGTTCGGTTCAATCATTTCGGTTGAGGATTTTGAG 476
Query 502 AAAACCATGGCGACCAGTCCTGGTTTCTATTCCTGAGCAATAAATaaaa 550
||||||||||||||||||| |||||||||||||||| ||| || |||||
Sbjct 477 AAAACCATGGCGACCAGTCTTGGTTTCTATTCCTGAACAACAA-TAAAA 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23369348121
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5