BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16220.1
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488472 jgi|Araly1|488472|fgenesh2_kg.6__1606__AT5G16220.1 2187 0.0
> Ahg488472 jgi|Araly1|488472|fgenesh2_kg.6__1606__AT5G16220.1
Length=1556
Score = 2187 bits (1184), Expect = 0.0
Identities = 1452/1578 (92%), Gaps = 32/1578 (2%)
Strand=Plus/Plus
Query 18 AAAATCGCACCTCCATGACCACCGTCTCCTCCGCTTTCGCCACCGTAGCGGAAGGCGCGA 77
||||| ||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 1 AAAATTGCACCACCATGACCACCGTCTCCTCCGCTTCCGCCGCCGTAACGGAAGGCGCGA 60
Query 78 AGGTTGTCACACCGAGATGGAAGAAGAATGAAAGAAATGGAAAGTTACGGGTGATGTGTA 137
|| ||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 AGATTGTCACACCGAGCTTGAAGAAGAATGAAAGAAATGGAACGATACGGGTGATGTGTA 120
Query 138 GGTATGGCGGTAGTATAGTTTCACCTCCGCAGACGAAATCGCCGCGTTATGTAGGCGGAG 197
|||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GGTATGGCGGTAGTATTCTCTCACTTCCGCAGACGAAATCGCCGCGTTATGTAGGCGGAG 180
Query 198 ATACTCGAATCGTCGCCATTCCTTCTTCCGCGGAAACGAGCTTCGCTTCTCTTGTTAGCC 257
||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 181 ATACTCGAATCGTCGCCGTTCCTCCCTCCGCGGAAACGAGCTTCGATTCTCTTGTTAGCC 240
Query 258 ACCTTACGGTTACGCTCAAAATCTCTTATCCTTTCAAAGTTAAATATCAGCTTCCTGATC 317
||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct 241 ACCTTACGGTTACGCTCGGAATCTCTTATCCTTTCAAGGTTAAGTATCAGCTTCCTGATC 300
Query 318 AGGAACTAGATTCGCTTATCTCCGTCGAGGCGGATGAGGATGTTCAGATCATGATGGAAG 377
||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 301 AGGAACTGGATTCGCTTATCTCCGTCGAGACAGATGAGGATGTTCAGATCATGATGGAAG 360
Query 378 AACACGGTTATCTCTCCTCCGAGTCCTCGATTCCCCAATCGCGTATCCGATTGTTTCTTT 437
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACACGGATATCTCCCCTCCGAGTCCTCGATTCCCCAATCGCGTATCCGATTGTTTCTTT 420
Query 438 TCCCATTGAAATCACAACAATCGAATGAAGCTGGTGCGAGTCAGGGAGATTCGGATCAGT 497
|||||||| | |||| | |||||||||||||||||||||||||| |||||||
Sbjct 421 TCCCATTG--------A-AATC--A-GAAGCTGGTGCGAGTCAGGGAGATTCAGATCAGT 468
Query 498 GTAAAGTGGAGACCGATATCGATTGGCTTGGAATCGAAGAGTCTAATAAGCCTATTCGTG 557
||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 469 GTAAAGTGGAGACTGATATCGATTGGCTTGGAATCGAAGAGTC---TAAGCCTATTAGCG 525
Query 558 AAGAATTGACTCAGCCGGTACTTCAGCACCCTAAGACGGAGATGTGGTTCGTAGACGCTT 617
| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 526 ACGAGTTGACACAGCCGGTGCTTCAGCACCCTAAGACGGAGATGTGGTTCGTAGACGCGT 585
Query 618 TGAAGAGCGTGGAGATGATGCAGACTAGACGAACTAATAGCGGAACTAGCGGAAGTGGAG 677
||||||||| ||||||| |||||| | | |||| ||||||||||| ||||||||||||||
Sbjct 586 TGAAGAGCGCGGAGATGTTGCAGAGTGGGCGAAATAATAGCGGAAGTAGCGGAAGTGGAG 645
Query 678 ATGGTAACGGCGGGATTTGTGGACAGGAGTCGATGATGCTAGAGACTAATTCATCCTTTG 737
|||| |||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 646 ATGGCAACGGCGGGATTTGCGGACAGGAGTCGATGATGCTCGAGACCAATTCCTCCTTTG 705
Query 738 GCTCGACATCATCCTCGGTTTCGTCGAGCAATTTACCTCCGATAAAAAGCTCCGGCGAGG 797
|||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||
Sbjct 706 GCTCGACATCATCCTCGGTTTCTTCGAGCAATTTACCTCCGATGAAAAGCACCGGCGAGG 765
Query 798 ACAACATAGCGAACTCGCAAGTCAAATTTGCGCCAATAGAATCAGTGACAAGCAACGACA 857
|||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 766 ACAACACAGCGAATTCGCAGGTCAAATTTGCGCCAATAGAATCAGTGACAAGAAACAACA 825
Query 858 ATTCTGCAGTCACCCCAATAC-CTTCCCACGAGCTACCATCACACTCACATGCTTTTGAG 916
|| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 826 ATACTGCAGTCACCCCAAT-CTCTTCTCACGAGCTACCATCACACTCACATGCTTTTGAG 884
Query 917 AACAAACCGTCTTCAAACTTGTATGTGGCTGAGCTAAACAGACCAGTTCCAGTCCCAATT 976
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 885 AACAAACCGTCTTCAAACTTGTATGAGGCTGAGCTAAACAGACCAGTTCCAATCCCAATT 944
Query 977 TCCGGGTATCCACCATTTATGAACCAAGCTCAACAACAACATATCCAAGTCATTTACACT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TCCGGGTATCCACCATTTATGAACCAAGCTCAACAACAACATATCCAAGTCATTTACACT 1004
Query 1037 GGACAACCTTACATTACCGGAAACTCACCTATGACATTGCCTGCCACAGCATACCATCAC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GGACAACCTTACATTACCGGAAACTCACCTATGACATTGCCTGCCACAGCATACCATCAC 1064
Query 1097 ACAAACCACGTCTATTATCAGCGTCCGCCACAACCATACCCAATCTATTACATTCCAGTC 1156
||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1065 ACAAACCACATCCATTATCAGCTTCCGCCACAACCATACCCAATCTATTACATTCCAGTC 1124
Query 1157 GAGCAGTACAGTTCGAGGCACGTTCAAGCACTGCCTGTGAAACCGAGCACCGTTTTAAAC 1216
||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 1125 GAGCAATACAGTTCGAGGCACGTTCAACCACCGCCTGTGAAACCGGGCACCGTTTTAAAC 1184
Query 1217 TATCACCAAGTTGATTCCCCGGTGGTCCGCACCAGCAGCCCTCTAGCGCCAGAGTTTTCC 1276
| ||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1185 TCTCACCAAGTTGATTCTCAGGTGGTCCGCACCAGCAGCCCTCTAGCACCAGAGTTTTCC 1244
Query 1277 TCACAGGTTTATCCTCTATCCAAACCCGTTGATTCATCGGTACAGACATCAAGTGAAGCT 1336
|| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1245 TCGCAGGTTTATCCTCCATCCAATCCCGTTGATTCATCGGTACAAACATCAAGTGAAGCT 1304
Query 1337 ACTCTTAATACTACTT-CAAGAGATGCTTTCATCTATAATACCGATGTCGATGACGACAA 1395
||||||| |||||||| || |||||| |||||||||||| ||||| | ||||||| ||||
Sbjct 1305 ACTCTTAGTACTACTTGCA-GAGATGTTTTCATCTATAACACCGACGACGATGACAACAA 1363
Query 1396 CGATATAGCTCATGCTCAAATTTACAAATCTCAGCCTCCAGCTCCCACATTACCGTCTCA 1455
|||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CGATATGGCTCGTGCTCAGATTTACAAATCTCAGCCTCCAGCTCCCACATTACCGTCTCA 1423
Query 1456 GTATTAAACCATTATGGTAACCGAAGCTTTCAGTCAGGTACA-G-ACACACT-A-----T 1507
|||||||||||||||| | ||||||||||||||||| |||| | |||||| | |
Sbjct 1424 GTATTAAACCATTATGCTGTCCGAAGCTTTCAGTCAGTTACACGCACACACGCACACAAT 1483
Query 1508 GCTTGAGAGATCTAAGAATCCCATCCATTCTCATGTTGCTGCACTTTCAGGTATTTGGCT 1567
||||||||||||| |||| ||| | ||||| |||| |||||||||||||||||||| |
Sbjct 1484 GCTTGAGAGATCTTAGAA-CCC-T---TTCTCGTGTTACTGCACTTTCAGGTATTTGGTT 1538
Query 1568 TTACAATTTTGTTTTGGT 1585
||||| ||||||||||||
Sbjct 1539 TTACAGTTTTGTTTTGGT 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66162755565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5