BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16230.1
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488473 jgi|Araly1|488473|fgenesh2_kg.6__1607__AT5G16230.1 1906 0.0
> Ahg488473 jgi|Araly1|488473|fgenesh2_kg.6__1607__AT5G16230.1
Length=1234
Score = 1906 bits (1032), Expect = 0.0
Identities = 1123/1167 (96%), Gaps = 5/1167 (0%)
Strand=Plus/Plus
Query 91 GCCGGCGGTGATAACTTCTCCTCGCCGTGGTTCTTCTCCTTCTCGTCGTCTTCGAGTTTC 150
|||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 30 GCCGGCGGCGGTAACTTCTCCTCGCCGTGGATCTTCTCCTTCTCGTCGTCTTCGAGTTTC 89
Query 151 TTGTGTTACCACAAACCCTGCTA-GGAAGAAAAACGAAACATGCAATCA-T--TTTCGAC 206
|||||||| ||||||||||||| |||| |||||||||||||||||||| | |||||||
Sbjct 90 ATGTGTTACGACAAACCCTGCTAGGGAA-AAAAACGAAACATGCAATCAGTACTTTCGAC 148
Query 207 CTATCAAAGAAGTAAATAACCAATTAACACACACAATACCACAGGAGAAGCTTGAGATCT 266
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 149 CTATCAAAGAAGTAAATAACCAAATAACACACACAATACCACAAGAGAAGCTTGAGATCT 208
Query 267 TCAAATCAATGGAAAATTGGGCAGAACAAAAACTACTACCTTATCTCAAACCGGTAGAAG 326
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 209 TCAAATCAATGGAGAATTGGGCAGAACAAAAACTACTACCTTATCTCAAACCGGTCGAAG 268
Query 327 ATTCATGGCAACCACAAGACTTCTTACCTGCGCCAGAGAACGACGACGAATTCTACGACC 386
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 269 ATTCATGGCAACCACAAGACTTTTTACCTGCGCCAGAGAACGACGACGAATTCTACGACC 328
Query 387 GAGTAAAAGAGATCAGAGAAAGAACAAAAGAGATACCTGACGATTACTTTGTAGTTCTTG 446
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 329 GAGTAAAAGAGATCAGAGAACGAACAAAAGAGATACCTGACGATTACTTTGTGGTTCTTG 388
Query 447 TGGGAGATATGATCACAGAAGAAGCACTTCCAACGTATCAAACGACGTTAAACACACTAG 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 389 TGGGAGATATGATCACAGAAGAAGCACTTCCAACGTATCAAACGACGTTAAACACACTTG 448
Query 507 ACGGTGTTAAGGATGAAACCGGTGGGAGTTTATCGCCGTGGGCTGTGTGGATTAGAGCCT 566
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 449 ACGGCGTTAAGGATGAAACCGGTGGGAGTTTATCGCCGTGGGCGGTGTGGATTAGAGCAT 508
Query 567 GGACGGCGGAGGAAAACCGTCACGGTGACTTACTCAACAAGTATCTTTATCTAACTGGTC 626
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 509 GGACGGCGGAGGAAAACCGTCACGGTGATTTACTCAACAAGTATCTTTATCTAACTGGTC 568
Query 627 GTGTTGATATGCGACATGTTGAGAAGACTATACAATATCTTATTGGTTCTGGTATGGATT 686
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 569 GTGTTGATATGCGACATGTTGAGAAGACTATACAATATCTCATTGGTTCTGGTATGGATT 628
Query 687 CGAAATTTGAGAACAATCCATACAATGGATTCATCTACACATCATTCCAAGAGCGAGCAA 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CGAAATTTGAGAACAATCCATACAATGGATTCATCTACACATCATTCCAAGAGCGAGCAA 688
Query 747 CATTCATCTCTCACGGCAACACGGCTAGGCTAGCCACAACATACGGCGATGTTACCCTCG 806
||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct 689 CATTCATCTCTCACGGCAACACGGCGAGGTTAGCCACAACCTACGGCGATGTTACCCTCG 748
Query 807 CGAAGATCTGCGGCACAATCGCTGCCGACGAGAAGCGACACGAGACGGCGTACACGAAGA 866
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 749 CGAAGATCTGCGGCACAATCGCCGCCGACGAAAAGCGTCACGAGACGGCGTACACGAAGA 808
Query 867 TAGTGGAGAAGCTATTCGAGATCGACCCTGACGGATCTGTTCAGGCGTTAGCGAGTATGA 926
|||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||
Sbjct 809 TAGTGGAGAAGCTATTCGAGATCGACCCCGACGGATCGGTTCAGGCGCTGGCGAGTATGA 868
Query 927 TGAAGAAACGGATCACAATGCCGGCTCATCTTATGCACGACGGAAGAGATAACGATTTGT 986
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 869 TGAGGAAACGGATCACAATGCCAGCTCATCTTATGCACGACGGAAGAGATAACGATCTGT 928
Query 987 TTGATCATTACGCCGCCGTGGCGCAGCGGATTGGAGTTTACACGGCGGCGGATTACGCTG 1046
|||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||
Sbjct 929 TTGATCATTACGCCGCCGTGGCGCAGCGAATTGGAGTTTATACGGCGACGGATTACGCTG 988
Query 1047 GGATACTTGAGTTTCTGTTGCGGCGGTGGAAGGTGGAGAGTTTGGGATTGGGGTTATCAG 1106
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 989 GGATACTTGAGTTTCTGTTGCGGCGGTGGAAGGTGGAGAGTTTGGGGTTGGGGTTATCAG 1048
Query 1107 GAGAAGGAAGGAGAGCACAGGAGTACTTGTGCACCTTGCCGCAGAGGATCAAGAGGTTAG 1166
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1049 GTGAAGGAAGGAGAGCACAGGATTACTTGTGCACCTTGCCGCAGAGGATCAAGAGGTTAG 1108
Query 1167 AGGAAAGAGCTAATGATAGGGTCAAACTTGTGTCAAAACCTTCTGTTTCGTTTAGCTGGG 1226
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1109 AGGAAAGAGCTAATGATAGGGTCAAACTTGGGTCAAAACCTTCTGTTTCGTTTAGCTGGG 1168
Query 1227 TTTTTGGTAGAGATGTGAAACTATAGA 1253
|||||||||||||||| ||||||||||
Sbjct 1169 TTTTTGGTAGAGATGTTAAACTATAGA 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51504060867
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5