BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16240.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941117 jgi|Araly1|941117|scaffold_601661.1 1831 0.0
Ahg477504 jgi|Araly1|477504|fgenesh2_kg.3__205__AT3G02630.1 1158 0.0
> Ahg941117 jgi|Araly1|941117|scaffold_601661.1
Length=1237
Score = 1831 bits (991), Expect = 0.0
Identities = 1161/1239 (94%), Gaps = 27/1239 (2%)
Strand=Plus/Plus
Query 154 ttgtttCGTTAAGAAGAAACAATGGTTATGGCTATGGATCGGATCGCTTTGTTCTCTTCC 213
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTG-TTCGTTGAGAAGAAACAATGGTTATGGCTATGGATCGGATCGCTTTGTTCTCTTCC 59
Query 214 TCATCATCTGTTTATCATCACGGTTCTTCTCATTCTCATGGCTCCAAATCTTCCAGAG-- 271
|||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 60 TCATCATCTGTTTATCAT--C-GTTCTTCTCATTCTCATGGCTCCAAATCATCCAGAGTT 116
Query 272 T---T---TT-CACTATTCGTTCCGACTCTACAG-CGGT-----TGGAAGGAAACTGTAT 318
| | || ||||||||||||||||||||||| || | ||||||||||| ||||
Sbjct 117 TCCATGGCTTCCACTATTCGTTCCGACTCTACAGACGATACAAATGGAAGGAAACCGTAT 176
Query 319 ATTCCTCCTCGAGAGGTTCATCTTCAAGTGAAGTATTCAATGCCACCACAAAAGCTGGAG 378
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 ATCCCTCCTCGAGAGGTTCATCTTCAAGTGAAATATTCAATGCCACCACAAAAGCTGGAG 236
Query 379 ATTTTCAAGTCCTTAGAAGGATGGGCTAATGACAACTTGTTGGCTTACT-TAAAACCTGT 437
|||||||||||||||||||||||||||||||| ||||||||| | || | ||||||| ||
Sbjct 237 ATTTTCAAGTCCTTAGAAGGATGGGCTAATGAGAACTTGTTGAC-TAATCTAAAACCAGT 295
Query 438 TGAGAAATCATGGCAACCAACTGATTTTCTCCCTGAACCTGAGTCAGAAGGATTCTATGA 497
||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 296 TGAGAAATCATGGCAGCCAACAGATTATCTCCCTGAACCTGAGTCAGAAGGATTCTTTGA 355
Query 498 CCAAGTTAAGGAGTTAAGAGAAAGGTGTAAGGAGCTCT-CTGATGACTACCTTATAGTGC 556
|||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||
Sbjct 356 CCAAGTTAAGGAGTTAAGAGAAAGGTGTAAGGAGCT-TACTGATGACTACTTTGTAGTGC 414
Query 557 TTGTTGGTGATATGATCACAGAGGAAGCACTTCCGACTTATCAGACCATGATTAATACAT 616
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 415 TTGTTGGTGATATGATCACAGAGGAAGCACTCCCGACTTATCAGACTATGATTAATACAT 474
Query 617 TGGACGGGGTTAGAGATGAGACGGGAGCAAGTCCAACTCCTTGGGCAGTATGGACTAGGG 676
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 475 TGGACGGGGTTAGAGATGAGACGGGAGCAAGTCCTACTCCTTGGGCTGTATGGACAAGGG 534
Query 677 CATGGACTGCGGAAGAGAATAGACATGGTGATCTTCTTAACAAGTACCTTTATCTGTCTG 736
| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 535 CCTGGACTGCCGAAGAGAATAGACATGGTGATCTTCTTAACAAGTATCTTTACCTGTCTG 594
Query 737 GACGAGTAGACATGAGACAGATTGAAAAAACTATTCAATACCTCATTGGTTCTGGAATGG 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GACGAGTAGACATGAGACAGATTGAAAAAACTATTCAATACCTCATTGGTTCTGGAATGG 654
Query 797 ATCCAAAAACTGAAAACAATCCTTACTTGGGATTCATATATACTTCTTTTCAAGAAAGAG 856
|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 655 ATCCAAAAACTGAAAACAATCCTTACCTGGGATTCATCTACACTTCTTTTCAAGAAAGAG 714
Query 857 CTACATTCATCTCCCATGGAAACACTGCTAGACTGGCAAAGGATCTTGGAGACTTGACAC 916
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 715 CAACATTCATCTCCCATGGAAACACTGCTAAACTGGCAAAGGATCTTGGAGACTTGAAAC 774
Query 917 TTGGGAAGATTTGTGGCACCATTGCTGCTGATGAGAGGCGCCATGAACACGCCTACACCA 976
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTGCTCAGATTTGTGGCACCATTGCTGCTGATGAGAGGCGCCATGAACACGCCTACACCA 834
Query 977 AGATTGTAGAGAAGCTCTTTGAAATTGATCCTGATACCACAGTCGTGGGCTTTGCTGACA 1036
|||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 835 AGATTGTAGAAAAGCTATTTGAAATTGATCCTGATACCACAATCGTGGGCTTTGCTGACA 894
Query 1037 TGATGAGGAAAAAGATCTCGATGCCTGCTCATTTGATGTATGATGGTCGTGATGATAATC 1096
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 895 TGATGAAGAAAAAGATCTCAATGCCTGCTCATTTGATGTACGATGGTCGTGATGATAATC 954
Query 1097 TATTTGATCACTTCTCGTCCGTGGCCCAGAGGCTTGGTGTCTACACTGCCA-AGGACTAT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 955 TATTTGATCACTTCTCGTCCGTGGCCCAGAGGCTTGGTGTCTACACTGCCAGAG-ACTAT 1013
Query 1156 GCTGATATACTGCAACATCTTGTGGAAAGGTGGAATGTGGAGAAGTTGTCAGACCTTTCT 1215
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1014 GCTGATATACTGCAATTTCTTGTGCAAAGGTGGAATGTGGAGAAGTTGTCAGACCTTTCT 1073
Query 1216 AGTGAAGGAAACAGGGCCCAGGACTACCTCTGTGGATTACCTGCTAGAATCCGCAAACTT 1275
||||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1074 AGTGAAGGACACAGGGCCCAGGACTATCTCTGTGGATTGCCTGCTAGGATCCGCAAACTT 1133
Query 1276 GAAGAGAGGGCTCAAGGGAGAACCAAAGAAGCAGCAAAAAACATACCATTCAGCTGGATT 1335
||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1134 GAAGAAAGAGCTCAAGGGAGAAGCAAAGAAGCTGCAAAAAACATACCATTCAGCTGGATT 1193
Query 1336 TTTGGTCGAGAAG-TCAGGGCTTAAAAGAAGTAATGTTA 1373
||||||||| ||| |||||||||||||||||||||||||
Sbjct 1194 TTTGGTCGA-AAGATCAGGGCTTAAAAGAAGTAATGTTA 1231
> Ahg477504 jgi|Araly1|477504|fgenesh2_kg.3__205__AT3G02630.1
Length=1635
Score = 1158 bits (627), Expect = 0.0
Identities = 925/1069 (87%), Gaps = 20/1069 (2%)
Strand=Plus/Plus
Query 303 TGGAAGGAAACTGTATATTCCTCCTCGAGAGGTTCATCTTCAAGTGAAGTATTCAATGCC 362
|||||||||||||||||| |||||| ||||||| ||| |||||||||| ||||||||||
Sbjct 271 TGGAAGGAAACTGTATATCCCTCCTAGAGAGGTGCATGTTCAAGTGAAACATTCAATGCC 330
Query 363 ACCACAAAAGCTGGAGATTTTCAAGTCCTTAGAAGGATGGGCTAATGACAA-CTTGTTGG 421
||||||||| ||||||| |||||||| ||||||||||||||| |||| || | |||||
Sbjct 331 GCCACAAAAGTTGGAGATCTTCAAGTCTTTAGAAGGATGGGCTGATGA-AACCCTGTTGA 389
Query 422 CTTACTTAAAACCTGTTGAGAAATCATGGCAACCAACTGATTTTC-TCCCTGAACCTGAG 480
|||| ||||| |||||||||||||| ||||| || || ||||||| |||| |||||||||
Sbjct 390 CTTATTTAAAGCCTGTTGAGAAATCGTGGCAGCCTACCGATTTTCTTCCC-GAACCTGAG 448
Query 481 TCAGAAGGATTCTATGACCAAGTTAAGGAGTTAAGAGAAAGGTGTAAGGAGC-TCTCTGA 539
||||||||||| ||||||||||| ||||||||||| |||||||||||||| | || ||||
Sbjct 449 TCAGAAGGATTTTATGACCAAGTCAAGGAGTTAAGGGAAAGGTGTAAGGAACTTC-CTGA 507
Query 540 TGACTACCTTATAGTGCTTGTTGGTGATATGATCACAGAGGAAGCACTTCCGACTTATCA 599
|||||| || | ||||||||||| ||||||||||| || ||||||||||| || || ||
Sbjct 508 TGACTATTTTGTGGTGCTTGTTGGGGATATGATCACTGAAGAAGCACTTCCTACGTACCA 567
Query 600 GACCATGATT-AATACATTGGACGGGGTTAGAGATGAGACGGGAGCAAGTCCAACTCCTT 658
||| ||| || || |||||||| || ||||| |||||||| || |||||||| ||||| |
Sbjct 568 GACGATG-TTGAACACATTGGATGGTGTTAGGGATGAGACAGGTGCAAGTCCTACTCCAT 626
Query 659 GGGC-AGTATGGACTAGGGCATGGACTGCGGAAGAGAATAGACATGGTGATCTTCTTAAC 717
|||| | | ||||| ||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct 627 GGGCTA-TTTGGACCAGGGCTTGGACTGCTGAGGAGAATAGACATGGGGATCTTCTTAAC 685
Query 718 AAGTACCTTTATCTGTCTGGACGAGTAGACATGAGACAGATTGAAAAAACTATTCAATAC 777
||||| |||||| ||||||| |||||||||||||| ||||||||||| || ||||| |||
Sbjct 686 AAGTATCTTTATTTGTCTGGTCGAGTAGACATGAGGCAGATTGAAAAGACAATTCAGTAC 745
Query 778 CTCATTGGTTCTGGAATGGATCCAAAAACTGAAAACAATCCTTACTTGGGATTCATATAT 837
|| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 746 CTGATTGGGTCTGGAATGGATCCAAAAACTGAAAATAATCCTTACTTGGGTTTCATCTAC 805
Query 838 ACTTCTTTTCAAGAAAGAGCTACATTCATCTCCCATGGAAACACTGCTAGACTGGC-AAA 896
|| || |||||||||||||| || ||||||||||||||||||||||| |||||||| |||
Sbjct 806 ACATCCTTTCAAGAAAGAGCGACCTTCATCTCCCATGGAAACACTGCCAGACTGGCGAAA 865
Query 897 GGATCTTGGAGACTTGACACTTGGGAAGATTTGTGGCACCATTGCTGCTGATGAGAGGCG 956
|||| |||||| |||| ||||| | |||| || || |||||||||||||||||||||||
Sbjct 866 -GATCGTGGAGATTTGAAACTTGCGCAGATATGCGGGACCATTGCTGCTGATGAGAGGCG 924
Query 957 CCATGAACAC-GCCTACACCAAGATTGTAGAGAAGCTCTTTGAAATTGATCCTGATACCA 1015
|||| | || || |||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 925 TCATG-AGACTGCTTACACCAAGATTGTGGAGAAGCTCTTTGAAATTGACCCTGATGGCA 983
Query 1016 CAG-TCGTGGGCTTTGCTGACATGATGAGGAAAAAGATCTCGATGCCTGCTCATTTGATG 1074
| | || ||||||| ||||| ||||||| |||||||||||| |||||||| ||||| |||
Sbjct 984 C-GATCTTGGGCTTGGCTGATATGATGAAGAAAAAGATCTCAATGCCTGCACATTTAATG 1042
Query 1075 TATGATGGTCGTGATGATAATCTATTTGATCACTTCTCGTCCGTGGCCCAGAGGCTTGGT 1134
|||||||| | |||||||| || ||||| |||||||| | || |||||||||||||||
Sbjct 1043 TATGATGGCCAAGATGATAACCTGTTTGAGCACTTCTCAACTGTTGCCCAGAGGCTTGGT 1102
Query 1135 GTCTACACTGCCAAGGACTATGCTGATATACTGCAACATCTTGTGGAAAGGTGGAATGTG 1194
|||||||| |||||||||||||||||||| ||| | |||||| ||| |||||||||||
Sbjct 1103 GTCTACACCGCCAAGGACTATGCTGATATTCTGGAGTTTCTTGTTGAACGGTGGAATGTG 1162
Query 1195 GAGAAGTTGTCAGACCTTTCTAGTGAAGGAAACAGGGCCCAGGACTACCTCTGTGGA-TT 1253
|||| ||||||| |||||||||||||||| ||||||| ||||||| |||| ||| ||
Sbjct 1163 GAGACTTTGTCAGGCCTTTCTAGTGAAGGACACAGGGCTCAGGACTTTGTCTGCGGACTT 1222
Query 1254 ACCTGCTAGAATCCGCAAACTTGAAGAGAGGGCTCAAGGGAGAACCAAAGAAGCAGCAAA 1313
||||| |||||||||||| |||||||||| |||||||| ||| ||||||||||||| ||
Sbjct 1223 -CCTGCAAGAATCCGCAAAATTGAAGAGAGAGCTCAAGGAAGAGCCAAAGAAGCAGCCAA 1281
Query 1314 AAACATACCATTCAGCTGGATTTTTGGTCGAGA-AGTCAGGGCTTAAAA 1361
|||||||||||||||||||||||||||| || | | | |||||||||||
Sbjct 1282 AAACATACCATTCAGCTGGATTTTTGGTAGAAATATT-AGGGCTTAAAA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5