BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16280.1
Length=4402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488478 jgi|Araly1|488478|fgenesh2_kg.6__1612__AT5G16280.1 4554 0.0
> Ahg488478 jgi|Araly1|488478|fgenesh2_kg.6__1612__AT5G16280.1
Length=4152
Score = 4554 bits (2466), Expect = 0.0
Identities = 2672/2772 (96%), Gaps = 11/2772 (0%)
Strand=Plus/Plus
Query 1428 ATATCGATAAAGCTTGGAAACACTATGCTGGTGTTCAGGAAATGAGGGGACTTGCATATT 1487
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1333 ATATCGATAAAGCATGGAAGCACTATGCTGGTGTTCAGGAAATGATGGGACTTGCATATT 1392
Query 1488 TCATCTCAGACCAGCCAAAAAAGGATTCTGAG---TGCATGGAAAATGCATTCAGCACTT 1544
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1393 TCATCTCAGACCAGTCAAAAAAGGATTCTGAGTATTGCATGGAAAAGGCATTCAGCACTT 1452
Query 1545 ATATGAAACTTGGGAAGTCTGGCTTCCAAAATGCTAC-GAGATGTGGGCTTTGGTGGGCA 1603
||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1453 ATATGAAACTTGGGAAGTCTGGCTTCCAAAATGCT-CTGAGATGTGGGCTCTGGTGGGCA 1511
Query 1604 GAGATGCTAAAGGCTAGAGATCAGCACAAAGAAGCTGCTTCGGTTTACTTCCGCATATGT 1663
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1512 GAGATGCTAAAGGGTAGAGATCAGCACAAAGAAGCTGCTTCTGTTTACTTCCGCATATGT 1571
Query 1664 GGAGAGGAACCCTTGCACGCTGCAGTCATGTTGGAGCAAGCTTCTTACTGTTTCATGTTA 1723
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1572 GGAGAGGAACCCTTGCACGCTGCAGTCATGTTGGAGCAAGCTTCTTACTGTTTCGTGTTA 1631
Query 1724 ACCAAGCCAGCGATGTTACACAAGTATGGATTTCATCTAGTTCTCTCAGGAGACCACTAT 1783
|| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1632 ACTAAGCCAGCGATGCTACACAAGTATGGATTTCATCTAGTTCTCTCAGGAGAACACTAT 1691
Query 1784 AAAAACTGTAATCAGGTTAACCATGCAATTCGTACATACAAAAGTGCAATCTCTGTTTAT 1843
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 AAAAACTGTGATCAGGTTAACCATGCAATTCGTACATACAAAAGTGCAATCTCTGTTTAT 1751
Query 1844 AAATCAACTACATGGAGCCATATCAAAGATCATTTATATTTTCATATTGGACAGTGGTAT 1903
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1752 AAATCAACTACATGGAGCCATATCAAAGATCATATATATTTTCATATTGGACAGTGGTAT 1811
Query 1904 GCAATTGTTGGGATGCATGATGTTGCAGTTAGAAACATGCTCAAAGTATTGGACTGTGGC 1963
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1812 GCAATTGTTGGGATGCATGATGTTGCAGTTAGAAACATGCTCAAAGTACTGGACTGTGGC 1871
Query 1964 TACCAATCCAAGGCAACCCAAGAGATTTTTCTCAGGGACTTTTTCGACATTGTTAAGAAA 2023
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1872 TACCAATCCAAGGCAACCCAAGAAATTTTTCTCAGGGACTTTTTCGACATTGTTAAGAAA 1931
Query 2024 ACTGGAATGAAGCATGAGGTGGTGGGACTTCAACTACCAATTCTTAATATGTCGTCTCTT 2083
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1932 ACTGGAATGAAGCATGAGGTGGTGGGACTTCAACTACCAGTTATTAATATGTCGTCTCTT 1991
Query 2084 CAAGTTATATATGAAGACCATCGCACTTATGCATCTCAAGCTTCTGCTCTTGTAGAAGAG 2143
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1992 CGAGTTATATATGAAGACCATCGCACTTATGCATCTCAAGCTTCTGCTCTTGTAGAGGAG 2051
Query 2144 AGCATCTGGCAATCACTGGAGGATGATATCATCCCATCATTAAATTCTGGCAAGTCAAAC 2203
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2052 AGCATCTGGCAATCACTGGAGGATGATATCATTCCATCATTAAATTCTGGCAAGTCAAAC 2111
Query 2204 TGGCTGGAATTACAGTCAAAGCTTCTGCCAAAGAAATACAAGGAATCAAATGTTTGTGTC 2263
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2112 TGGCTGGAGTTACAGTCAAAGCTTCTGCCAAAGAAATACAAGGAATCAAATGTTTGTGTC 2171
Query 2264 GCTGGAGAGTCGGTGAAATTGGATCTGGAGTTTAGGAATCCATTGCTAATCTCTACTTCC 2323
||||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||||
Sbjct 2172 TCTGGAGAGTCGGTGAAAGTGGATCTGGAGTTTAAGAATCCGTTGCTAATTTCTACTTCC 2231
Query 2324 ATAACAAGTGTGTCTCTTATCTGTGAACTTACCGCAAATTCTGACGACCTAAAATTAGTA 2383
||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2232 ATAACAAGTGTGTCTCTAATCTGTGAACTTACCACAAATTCTGATGACCTAAAATTAGTA 2291
Query 2384 GATAATGAGCCAAGTGGCTCAAGCTTGAGTCCTGAGATTTCCACAGAACATAATCAGGTT 2443
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2292 GATAATGAGCCAAGTAGCTCAAGCTTGGGTCCTGCGATTTCCACAGAACATAATCAGGTT 2351
Query 2444 ACAACCTCTGGTTTTTCTTCTTTCACTTTGTCTGAAGTGGACTTCACATTAGGTGGAGGC 2503
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2352 ACAACCTCCGGTTTTTCTTCTTTCACTTTGTCTGAAGTGGACTTCACATTAGGTGGAGGC 2411
Query 2504 GAGAAAAAATTGGTGAGACTCACTGTTACCCCCAGTGAAGAAGGTATCCTCAAAATTGTC 2563
|||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 2412 GAGAAAAATTTGGTGAGACTCACGGTTACCCCCACTGAAGAAGGTATCCTCAAAATTGTC 2471
Query 2564 GGTGTAAGGTGGGAGTTGTCTGGTTCCATCGTAGGTGTGCATTACTTCCAATCTGTGTCT 2623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2472 GGTGTAAGGTGGGAGTTGTCTGGTTCCATCGTAGGTGTGCATTACTTCCAATCTGTGCCT 2531
Query 2624 GTCAAGGCAAAAACTGCGAGAGGAAGAAGGAAAAACAAACTTACACCCACTGATGCCTTG 2683
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2532 GTAAAGGCAAAAACTGCGAAAGGAAGAAGGAAAAACAAACTTACACCCACTGATGCCTTG 2591
Query 2684 AAATTTTTAGTCATCAAGAGTCTACCCAGGCTTGAGGGTTCAATTGATCATCTGCCTGAG 2743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2592 AAATTTTTAGTCATCAAGAGTCTACCCAGGCTTGAGGGTTCAATTGATCATCTGCCTGAG 2651
Query 2744 AAATTGTATGCTGGAGATTTACGTTATCTTGTTTTAGAGTTAAGAAATAAGTCAGAATCC 2803
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2652 AAATTGTATGCTGGAGATCTACGTTATCTTGTTTTAGAGTTAAGAAATAAGTCAGAATCC 2711
Query 2804 CCAACAAAGAATCTTAAAATGAAGATTAGCCATCCAAGATTTGTAAGTCCTGGAAATCAT 2863
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2712 CCAATAAAGAATCTTAAAATGAAGATTAGCCATCCAAGATTTGTAAGTCCTGGAAATCAT 2771
Query 2864 GAAGAAGAGCTGACAACCGAATTTCCAGATTGCTTAAAGAAGGGCGATGAACATAATATT 2923
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 2772 GAAGAAGAGCTGACAACCGAATTTCCAGATTGCTTAAAGAAGGGAGATGACCAAAATATT 2831
Query 2924 GTTCAGCGTGAAAGTAATAGAACAAGTAGTGTATTTGCATTTCCAAAGGATGTATCACTG 2983
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2832 GTTCAGCATGAAACAAATAGAACAAGTAGTGTATTTGCATTTCCAAAGGATGTATCACTG 2891
Query 2984 CAAGGAGACAGATCATTAAGGTGGCCTCTTTGGCTTCGAGCTGCCATCCCAGGAACAATA 3043
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2892 CAAGGAGACAGATCATTAAGGTGGCCTCTTTGGCTTCGAGCTGCCATCCCAGGGACGATA 2951
Query 3044 TCTTTGTATTTTACGATATACTATGAAATGGAAAATGTATCAAGCAT---GAAATACCGC 3100
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2952 TCTTTGTATTTTACAATATACTATGAGATGGAAAATGTATCAAGCATCATGAAATACCGC 3011
Query 3101 ACCCTAAGGATGCATTATAATTTGCAGGTTTTACCGTCTCTACAGACCTCGTTC-AAAGT 3159
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 3012 ACCCTAAGGATGCATTATAATTTGCAGGTTTTACCGTCTCTACAGACCTCATTCGAAA-T 3070
Query 3160 CACCCCATCTCCATCAAGATTGCAAGAATTTCTTGTGCGTATGGATATCGTGAACCGTGC 3219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3071 CACCCCATCTCCATCAAGATTGCAAGAATTTCTTGTGCGTATGGATATCGTGAACCGTGC 3130
Query 3220 GAAGTCAGATTGTTTCCAAATTCACCAGTTGTCAACAGTTGGGTGCCGGTGGGGTATCTC 3279
||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3131 GAATTCAGGTTGTTTCCAAATTCACCAGTTGTCGACAGTTGGGTGCCGGTGGGGTATCTC 3190
Query 3280 ATTGCTTCAGCCTGTTGATACAATCTTACCTTCCAAATTTCTACTCGCTGGGCAAGCTTT 3339
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 3191 GTTGCTTCAGCCTGTTGATACAATCTTACCTTCCAAGTCTCTACTCGCTGGGCAAGCTTT 3250
Query 3340 ATCTTGTTTCTTCATGATAAAGGATTGCAGAAAATCCGGGACTGAAGACGAGGAAACCAC 3399
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3251 ATCTTGTTTCTTCATGATAAAGGATTGCAGAAAATCCGGGACTGATGACGAGGAAACCAT 3310
Query 3400 GTCCCTTCCTCCCAGCCAAACTGATGTAAAATTGTATACTCAGGATGACGATGAAAAGCT 3459
||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 3311 GTCCCTTCCTCCCAGCCAAACCGACGTAAAATTGTTTACTCAGGATGACGATGAAAAGCT 3370
Query 3460 TTTCGATATCGTTAGCTCACCTTTAGCAAGCTTCCATGAAAGTGAAAGGTCATGTCAGGG 3519
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3371 TTTCGATATCGTTAGCTCACCTTTAGCAAGCTTCCATGATAGTGAAAGGTCATGTCAGGG 3430
Query 3520 ACCCTCGGTTCAGGTAAGTCCAAATACTGTTGACTTCATCCTAATCTCTCGCCTGGCGAA 3579
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 3431 ACCCTCGGTTCAGGTAAGTCCAAATACCGTTGACTTCATTCTAATCTCTCGCCTGGCAAA 3490
Query 3580 AAGCAGCAGTCCATCAGCAGTTCCCGATTTACCAAAGATTTTGTCTCACCATTCATGTCA 3639
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3491 AAGCAGCAGTCCATCAGCAGTTCCCGATTTACCAAAGATTTTGACTCACCATTCATGTCA 3550
Query 3640 TAACAGTATCAGAAGCTCGAGCCCGATCTCGTGGTCACTAGACGGTCCCCAAACCATACA 3699
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 3551 TAACAGTATCAGAAGCTCGAGTCCGCTCTCGTGGTCACTAGACGGTCCCCAAACCATACA 3610
Query 3700 CCACGACTTTTCGACCTCCTTGTGTGAAATAAAACTAAAGATGGTAATCAGAAACACATC 3759
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3611 CCACGACTTTTTGACCTCCTTGTGTGAAATAAAACTAAAGATGGTAATCAGAAACACATC 3670
Query 3760 TGATGGAATATCATCTGTGACCATCAACACGAATGATTTTCTACCAGACGCAGCAGCAAC 3819
||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 3671 TGATGGATTAACATATGTGACCATCAACACGAATGATTGTCTACCAGACGCAGCAGCACC 3730
Query 3820 TACTTCTTCCTCTGGAAACCAATCCGGGTGGCGCTACGTGCCAACCATCACAGAGGAAAT 3879
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 3731 TACTTCTTCCTCTGGAAACCAATCCGGGTGGCGCTACGTGCCAACCGTAACAGAGGAAAT 3790
Query 3880 GAAACTAACTTCAGATGTGATGGGAAGCCGTCTGGGAAAACCGCCATCTTCCATGGAAAG 3939
|||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||
Sbjct 3791 GAAACTAACTTCAGATGTCATGGGAAGCCGCCTGGGAAAACCGTCATCTTCCATGGAAAG 3850
Query 3940 CTCACCTCCTTTCATATGGTCAGGTTTAAGTTCCACAAAGATCCAAATCCAGCCATTATC 3999
||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 3851 CTCACCTCCATTCATATGGTCAGGTTTAAGTTCAACAAAGGTCCAAATCCAGCCATTATC 3910
Query 4000 CACAACCGAAATACCGCTGCAGATATCAGTTTTCTCTCCAGGTATCTACGATCTGTCTTC 4059
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3911 CACAACCGAAATCCCGCTGCAGATATCAGTTTTCTCTCCAGGTATCTACGATCTCTCTTC 3970
Query 4060 ATATGAACTTAACTGGGAGCTATCTGAGCATGAAAGTGCAACATCATCAGGGACATGCCA 4119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3971 ATATAAACTTAACTGGGAGCTATCTGAGCATGAAAGTGCAACATCATCAGGGACATGCCA 4030
Query 4120 AGGTTATCCTTATTACCTTACTGTTCTTCAGTCTGAGTGAGCTTTT-ATAGTTCTCTCTA 4178
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 4031 AGGTTATCCTTATTACCTTACTGTTCTTCAGTCTGAGTGAGCTTTTTATAGTTCTCTCTA 4090
Query 4179 ATGGTTGGGTGT 4190
|||||||| |||
Sbjct 4091 ATGGTTGGATGT 4102
Score = 2015 bits (1091), Expect = 0.0
Identities = 1233/1301 (95%), Gaps = 11/1301 (1%)
Strand=Plus/Plus
Query 21 CTCCAAATCTCCAATCGAA-CTTTGCCTACATCTCTCCCTCTACGTCGATCTCGATCCCG 79
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1 CTCCAAATCTCCAATCGAACCTTTGCCTACACCTCTCCCTCTACGTCGATCTGGATCCCG 60
Query 80 ATTACGATCATCCGATCATTCTCCGGTTAA-TACGCCGTACTGACTGCTTTCTCCATTCT 138
|| |||||||||| ||||||||||||| || ||||||||||| | ||||||||| ||||
Sbjct 61 ATCACGATCATCCAATCATTCTCCGGTGAATTACGCCGTACTCATTGCTTTCTCTGTTCT 120
Query 139 ACATACTCCATCATTTACCGATATCTTCATTCCTACCTACATCAAGTCCGGCAGCTGCCG 198
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 ACGTACTCCATCATTTACCGATATCTTTTTTCCTACCTACATCAAGTCCGGCAGCTGCCG 180
Query 199 ACGACGGCGTCGTAGCTCCGATTGGCTTAAAAAGGTGGAGATCTAGGTTATTGAATCGCA 258
|||||||||||||||||||||||||||| |||| || ||||||||||||| |||||||||
Sbjct 181 ACGACGGCGTCGTAGCTCCGATTGGCTT-AAAA-GTAGAGATCTAGGTTACTGAATCGCA 238
Query 259 CCGCCTCCAAAATCTATCCGACCTGAAATCGGATTAGATACACAGTGAAGAGGTTTGAGA 318
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 239 CCGCCTCCAAAATCTATCAGACCTGAAATCGGATTAGATACACAGTGAAGAGATTTGAGA 298
Query 319 GACTAGTTAAGCGAACGGAAGAATGGTGGAGCCGGTGAACTCTTCGCTTGGGAAAATGCT 378
||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 GACTAGTTAGGCGAAAGGAAGAATGGTGGAGCCGGTGAACTCTTCGTTTGGGAAAATGCT 358
Query 379 ATTGGAGGAAATTAGTCCAGTGGTCATGGTTCTATGTACGCCTCTTGTTGAAGATACTTT 438
|||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 359 ATTGGAGGAAGTTAGTCCAGTGGTCATGGTTCTCTGTACGCCTCTTGTTGAAGAGACTTT 418
Query 439 CCTCAGGAATGGCT-TATCCTTTGTGGAAACGCTCAAGCCATTCTGCAACTTTAGTAACA 497
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 CCTCAAGAATGG-TCTATCCTTTGTGGAAACGCTCAAGCCATTCTGCAACTTTAGTAATA 477
Query 498 TCGATGTGCCTGTTCGGACATCGAGCGATCAGCTGTATCGGCTAAAGAAGTTTACATTAA 557
|||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| || |
Sbjct 478 TCGATGTGCCTGTTCGGACATCAAGCGATCAGCTATATCGTCTAAAGAAGTTTACGTTGA 537
Query 558 GATTGTTTTATGCCTCCGATATAAAGCAACCAAACGTAGAGGTTGCTAAGCAACGGCTAG 617
|||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |
Sbjct 538 GATTGTTTTATGCCTCCGATATCAGGCAACCAAACGTAGAGGTTGCAAAGCAACGGCTGG 597
Query 618 AACGTGTTATTACTCAAGCTGGGGAGAAGGATTTTCAGGATTTGAAATCTGACCCTCCTC 677
||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 598 AACATGTTATTACTCAAGCTGGGGAGAAGGATTTTCATGATTTGAACTCTGACCCTCCTC 657
Query 678 AAATTACTGATATACTCTCTAATCCAGAGTCTGAAATTGCACCCTCATGGTTTCGGTATT 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 AAATTACTGATATACTCTCTAATCCAGAGTCTGAAATTGCACCCTCATGGTTTCAGTATT 717
Query 738 ACAATAAAGAACTTATACGTACATTGTCGTTTTCAGACCACGAAGCTTTCGATCATCCTG 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACAATAAAGAACTTATACGTACATTGTCGTTTTCAGACCACGAAGCTTTCGATCATCCTG 777
Query 798 TGGCATGTCTATTGGTCGTTTCATCAAAAGATGAAGAACCTATaaaaaaaTTTGTAGATC 857
|||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 778 TGGCTTGTCTCTTGGTCGTTTCATCAAAAGACGAAGAACCTATAAATAAATTTGTAGATC 837
Query 858 TTTTCAACTCCAATAGATTACCTACTGATGGTACAATGGACCCAAACATTTTGAAGCATT 917
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 838 TTTTCAACTCCAATAGATTACCTACTGATGGTACAATGGACCCAAATATTTTGAAGCATT 897
Query 918 ACTTGTTGGTGCATGACAATCAAGATGCAACAACAGAGAGAACGTCTAAAGTTCTGTCAG 977
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 898 ACTTGTTGGTGCATGACAATCAAGATGCAACAACAGAGAGAACGTCTAAAGTCCTTTCAG 957
Query 978 AGATGAGAAGTCAATTTGGAAATAATGAATGCAACTTACTTTGCACTAATTCATCTAAAG 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGATGAGAAGTCAATTTGGAAATAATGAATGCAACTTACTTTGCACTAATTCATCTAAAG 1017
Query 1038 AGGGGAACGTGGAACATCAGGCTAATCCCTGGGCTTCATTTAAATCAAGTGTTTCGGCCG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGGGGAACGTGGAACATCAGGCTAATCCCTGGGCTTCATTTAAATCAAGTGTTTCGGCCG 1077
Query 1098 ACAAACTTGGATGTGCTCTCACTGGTGATGATATTGTGGAG-A--TCAAAGATCTGATGC 1154
|||||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||
Sbjct 1078 ACAAACTTGGATGTGCCCTCACTGGTGACGATATTGTGGAGCAGATCAAAGATCTGATGC 1137
Query 1155 AAGAGTTTGCTTCAAGGCATATAATTCCTTACATGGAGCAGAAAGTTCGAGAACTTAATC 1214
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAGAGTTTGCTTCCAGGCATATTATTCCTTACATGGAGCAGAAAGTTCGAGAACTTAATC 1197
Query 1215 AACAGATTTCTGCAACAAGGAAAGGTCTTAAAAATCA-ATTTAAAAACTTTTTGTGGAGA 1273
|||||||||||||||||||||||||||||| ||| || ||| |||||||| | |||||||
Sbjct 1198 AACAGATTTCTGCAACAAGGAAAGGTCTTAGAAACCAGATT-AAAAACTTATGGTGGAGA 1256
Query 1274 AAAGGAAAAGACGATAATCCGGATGCCACCAAAGGTTCTAT 1314
|||||||||| |||| |||||||| ||||||||||||||
Sbjct 1257 AAAGGAAAAGGCGATGGTCCGGATGTGACCAAAGGTTCTAT 1297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166501881875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5