BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16285.1
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893541 jgi|Araly1|893541|Al_scaffold_0006_1537 307 2e-83
Ahg897462 jgi|Araly1|897462|Al_scaffold_0005_1428 171 3e-42
> Ahg893541 jgi|Araly1|893541|Al_scaffold_0006_1537
Length=963
Score = 307 bits (166), Expect = 2e-83
Identities = 201/218 (92%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 1 ATGAGGATTGAATCGCTGCTGCAACATGATGTAGTAGAGCGAATCCTGGAGAGACTTGCG 60
|||||||| ||||||||||||| || ||||||||||||||||||||||||| |||| |
Sbjct 19 ATGAGGATGGAATCGCTGCTGCCCCACCATGTAGTAGAGCGAATCCTGGAGAGTCTTGAG 78
Query 61 GTGAATTCTCTGCCTCGATTCAAGGCTGTATCGAAGCAATGGAAATCAACAATTGAATCC 120
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 79 GTGAATTCTCTGCTTCGATTCAAGGCTGTATCGAAGCAATGGAAATCGACAATTGAATCC 138
Query 121 CAATTCTTCCAAGGAAAACACTTGACGCATCGTCAGCAATCAGGAGATCCAGTTGTTCTC 180
|||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||
Sbjct 139 CAATTCTTCCAAGGAAAACACTTGACGCATCGTCTCCAATCAGGAGATTCAGATGTTCTC 198
Query 181 ATGGTGACCGTATATAATGACGACTCCCC-GCACGTGG 217
|||||| ||||| ||||||||||| |||| ||||||||
Sbjct 199 ATGGTGGCCGTACATAATGACGAC-CCCCTGCACGTGG 235
> Ahg897462 jgi|Araly1|897462|Al_scaffold_0005_1428
Length=1089
Score = 171 bits (92), Expect = 3e-42
Identities = 154/183 (84%), Gaps = 7/183 (4%)
Strand=Plus/Plus
Query 6 GATTGAATCGCTGCTGCAACATGATGTAGTAGAGCGAATCCTGGAGAGACTTGCGGTGAA 65
||| |||||||||| | || |||| ||||||| ||||||||||||||| ||| |||
Sbjct 30 GATGGAATCGCTGC--C-CCACGATGCCGTAGAGCTTATCCTGGAGAGACTTCCGGCGAA 86
Query 66 TTCTCTGCCT-CGATTCAAGGCTGTATCGAAGCAATGGAAATCAACAATTGAATCCCAAT 124
|||||| || |||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 87 ATCTCTG-CTGAGATTCAAGGCTGTATCGAAGCAATGGAAATCAACGATCCAATGCCAAC 145
Query 125 TCTTCCAAGGAAA-ACACTTGACGCATCGTCAGCAATCAGGAGATCCAGTTGTTCTCATG 183
||||||||| ||| |||||||| ||| |||||||||| ||| ||||||| ||| ||||||
Sbjct 146 TCTTCCAAG-AAAGACACTTGAGGCAGCGTCAGCAATTAGGGGATCCAGATGTCCTCATG 204
Query 184 GTG 186
|||
Sbjct 205 GTG 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500741661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5