BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16290.1
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488480 jgi|Araly1|488480|fgenesh2_kg.6__1614__AT5G16290.2 2508 0.0
> Ahg488480 jgi|Araly1|488480|fgenesh2_kg.6__1614__AT5G16290.2
Length=1734
Score = 2508 bits (1358), Expect = 0.0
Identities = 1629/1752 (93%), Gaps = 50/1752 (3%)
Strand=Plus/Plus
Query 40 TCACCCAAAGTttctctctttctctcttc-tc--ct-tctGCTGTTTTCCGCCTCACACC 95
|||||||||||||| |||||||||||||| || || |||||||||||||||||||||||
Sbjct 1 TCACCCAAAGTTTCCCTCTTTCTCTCTTCTTCTTCTCTCTGCTGTTTTCCGCCTCACACC 60
Query 96 ATTACTCTCCCAGA-AATGGCGGCGACGACGACTGCTACTTCATTATTCTCATCTCGTCT 154
|||||||||||| | ||||||||||||| |||||||| ||||| || | || | | |||
Sbjct 61 ATTACTCTCCCA-ACAATGGCGGCGACGGCGACTGCTGCTTCACTA-T-TC--C-CATCT 114
Query 155 TCACTTCCAGAATCAGAATCAAGGTTATGGGTTTCCGGCGAAAACCCCCAACTCCCTGCA 214
| ||||||||||||||| | ||| |||||| |||||||||||||||||||||||| ||||
Sbjct 115 T-ACTTCCAGAATCAGATTAAAGTTTATGGCTTTCCGGCGAAAACCCCCAACTCCGTGCA 173
Query 215 AGTAAATCAGATCATCGACGGGAGGAAGATGAGGAATGCCACTGTTCTCTCAGCTGCTTC 274
||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 174 AGTAACTCAAATCATCGACGGGAGGAAGATGAGAAATGCCACTGTTCTCTCTGCTGCCTC 233
Query 275 CACTGATAAAGCCATCACCACTGCTCAATCTGTAGCTCCGACGGCTTGTGATAGAGTAAG 334
||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||
Sbjct 234 CACCGATAAAGCCATCACCACCGCTCAATCTGTAGCTGCGACGGCTAGTGATAGAGTAAG 293
Query 335 GAGGCATACAATCTCGGTGTTTGTGGGCGATGAGAGCGGTATAATAAATAGAATTGCTGG 394
||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 294 GAGGCATACCATCTCGGTGTTTGTGGGTGATGAGAGCGGTATAATAAACCGGATTGCTGG 353
Query 395 AGTATTTGCTAGAAGGGGATACAATATTGAGTCCCTTGCCGTAGGATTGAATGAAGACAA 454
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 354 AGTGTTTGCTAGAAGGGGATACAATATTGAGTCCCTTGCCGTGGGATTGAATGAAGACAA 413
Query 455 GGCTCTGTTTACTATAGTTGTTCTTGGAACAGATAAAGTCTTGCAGCAAGTTGTAGAACA 514
||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 414 GGCTCTGTTTACTATCGTTGTTCTTGGGACAGACAAAGTCTTGCAACAAGTCGTAGAACA 473
Query 515 GCTTAACAAGCTCGTCAATGTCATCAAGGTGGAAGATCTCTCCAAGGAGCCCCATGTAGA 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GCTTAACAAGCTCGTCAATGTCATCAAGGTGGAAGATCTCTCCAAGGAGCCCCATGTAGA 533
Query 575 ACGTGAGTTAATGCTCATTAAACTTAACGCTGATCCAAGCACCCGCTCAGAGATCATGTG 634
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ACGTGAATTAATGCTCATTAAACTTAACGCTGATCCAAGCACCCGCTCAGAGATCATGTG 593
Query 635 GTTGGTGGATATCTTTAGAGCAAAAATCGTGGATACCTCAGAGCAATCTCTAACGATTGA 694
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 594 GTTGGTGGATATCTTTAGAGCAAAAATCGTGGATACCTCAGAGCACTCTCTAACGATTGA 653
Query 695 GGTAACTGGAGACCCTGGAAAAATGGTTGCACTAACGACAAACTTAGAGAAGTTTGGAAT 754
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GGTAACTGGAGACCCAGGAAAAATGGTTGCACTAACGACAAACTTAGAGAAGTTTGGAAT 713
Query 755 AAAAGAAATTGCGAGAACAGGGAAGATTGCTCTGAGACGGGAAAAGATGGGAGAAACCGC 814
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AAAAGAAATTGCAAGAACAGGGAAGATTGCTCTGAGACGGGAAAAGATGGGAGAAACCGC 773
Query 815 TCCGTTTTGGAGATTTTCAGCGGCATCATATCCACATCTTGTAAAGGAATCATC-TC--A 871
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 774 TCCGTTTTGGAGATTTTCAGCGGCATCATACCCACATCTTGTAAAGGAATCATCATCTCA 833
Query 872 TGAGACTGTTGCAGAGAAAACAAAACTAGCATTGACTGGAAATGGCAATGCATCATCCGG 931
||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||
Sbjct 834 TGAAACTGTTGCAGAGAAAACAAAGCTAGCATTGAATGGAAATGGCAATGCATCATCGGG 893
Query 932 GGGTGACGTTTATCCAGTGGAACCCTATAACGATTTCAAACCGGTCCTTGACGCTCATTG 991
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 894 GGGTGACGTTTATCCAGTGGAACCCTATAATGATTTCAAACCGGTCCTTGACGCTCATTG 953
Query 992 GGGAATGGTCTACGATGAAGATTCGAGCGGACTTCGGTCCCACACATTATCTTTACTTGT 1051
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 954 GGGAATGGTCTATGACGAAGATTCGAGCGGACTCCGGTCCCACACATTATCTTTACTTGT 1013
Query 1052 GGCCAACGTTCCCGGAGTTCTCAATCTAATAACTGGAGCTATCTCTAGAAGAGGTTATAA 1111
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1014 GGCCAACGTTCCCGGTGTTCTCAATCTAATAACTGGAGCTATCTCCAGGAGAGGTTATAA 1073
Query 1112 CATCCAGAGTCTAGCTGTTGGTCCTGCTGAGAAAGAGGGCTTATCTCGGATTACAACAGT 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CATCCAGAGTCTAGCTGTTGGTCCTGCTGAGAAAGAGGGCTTATCTCGGATTACAACAGT 1133
Query 1172 TATTCCCGGAACTGATGAAAATATAGATAAATTGGTTAGGCAGCTCCAGAAGTTGATTGA 1231
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 TATCCCCGGAACTGATGAAAATATAGACAAATTGGTTAGGCAGCTCCAGAAGTTGATTGA 1193
Query 1232 TCTTCAGGAGATCCAAAATATAACGCACATGCCATTTGCGGAGCGAGAACTGATGCTCAT 1291
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TCTTCAGGAGATACAAAATATAACGCACATGCCATTTGCGGAGCGAGAACTGATGCTCAT 1253
Query 1292 CAAAGTAGCTGCTGATACTTCTGCAAGGAGAGATGTTTTAGATATTGCTCAAGTTTTCCG 1351
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1254 CAAAGTAGCTGCTGATACTTCTGCAAGGAGAGATGTTCTCGATATTGCTCAAGTTTTCCG 1313
Query 1352 TGCTAAAGCCATTGATGTCTCTGATCATACTATCACCCTTGAGGTTACAGGGGATCTCAG 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1314 TGCTAAAGCCATTGATGTCTCTGATCATACTATCACCCTTGAGGTTACAGGGGATCTTAG 1373
Query 1412 AAAAATGTCTGCATTACAAACGCAGTTAGAGGCCTATGGAATCTGCGAGGTGGCTCGGAC 1471
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1374 AAAAATGTCTGCACTACAAACGCAGTTAGAGGCCTATGGACTCTGCGAGGTGGCTAGGAC 1433
Query 1472 AGGAAGAGTGGCATTGGTAAGAGAATCTGGAGTGGATTCGACTTATCTTCGTGGATACTC 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 AGGAAGAGTGGCATTGGTAAGAGAATCTGGAGTGGATTCGACTTATCTTCGTGGATACTC 1493
Query 1532 TCTTCCTTTGTAGTTC------T-AGA-GA--GGA-CTTGCC-G--CA-AG--CTT-CAG 1573
|||||||||||||||| | ||| || ||| ||| | | || || ||| | |
Sbjct 1494 TCTTCCTTTGTAGTTCCAAAGGTTAGATGAAAGGATCTT-CTTGTGCAGAGGACTTACCG 1552
Query 1574 T--GTCGTTCC-TGGAAACTAGTCAAAAGGACTGCACGTTGTTTCAGCATCTGTGATTGA 1630
| | ||| || | ||||||||||||||||||| |||||| |||||||||||
Sbjct 1553 CAAG-C-TTCAGTGTA--CTAGTCAAAAGGACTGCACATTGTTT-----TCTGTGATTGA 1603
Query 1631 TTGCTTCCTCACGAGTCATGGCGCTTCGAGTTGTTGTTATAGGAGGAGCTATTTTA-TGA 1689
||||||||||||||| ||||||| || |||||||||||||||||||| || ||| | |||
Sbjct 1604 TTGCTTCCTCACGAGCCATGGCGTTTGGAGTTGTTGTTATAGGAGGACCTGTTT-AGTGA 1662
Query 1690 ACTAAAAATAAATAATTATCTTTGTTCCGTTAAATTAGTTTTGCATACTAATC--AAATG 1747
|||||||||||||||| || |||||||||||| |||||||||| ||||| || |||||
Sbjct 1663 ACTAAAAATAAATAATAATGTTTGTTCCGTTAGATTAGTTTTGAATACTTTTCTCAAATG 1722
Query 1748 TAGAACACTGTT 1759
||||||||||||
Sbjct 1723 TAGAACACTGTT 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67724455610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5