BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16310.1
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488484 jgi|Araly1|488484|fgenesh2_kg.6__1618__AT5G16310.1 1766 0.0
> Ahg488484 jgi|Araly1|488484|fgenesh2_kg.6__1618__AT5G16310.1
Length=1184
Score = 1766 bits (956), Expect = 0.0
Identities = 1055/1102 (96%), Gaps = 10/1102 (1%)
Strand=Plus/Plus
Query 132 CATGTCTTGGCTTCCTGTAGAATCTGATCCTGGTATTTTCACTGAGATTATACAACAAAT 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 28 CATGTCTTGGCTTCCTGTAGAATCTGATCCTGGTATTTTCACTGAGATTATACAACAGAT 87
Query 192 GCAAGTGAAAGGTGTGCAGGTTGAGGAATTGTATTCCTTGGACTTCAACTCTCTGGATGA 251
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 88 GCAAGTGAAAGGTGTGCAAGTTGAGGAATTGTATTCCTTGGACTTTAATTCTCTGGAAGA 147
Query 252 AATAAGACCTGTCTATGGATTGATATTGCTTTACAAGTGGCGTCCAGAAGAAAAGGAGAA 311
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 AATAAGACCTGTATATGGATTGATATTGCTTTACAAGTGGCGTCCAGAAGAAAAGGAGAA 207
Query 312 TCGTGTTGTCATCACAGAGCCAAACCCGAATTTCTTCTTTGCAAGCCAGATAATCAACAA 371
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 208 TCGTGTTGTTATCACAGAGCCAAACCCAAATTTCTTCTTTGCAAGCCAGATAATCAACAA 267
Query 372 TGCTTGTGCGACCCAAGCGATATTATCAGTCCTCATGAACTCTTCGAGTATTGATATTGG 431
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 268 TGCTTGTGCGACCCAAGCGATATTATCAGTTCTCATGAACTCTTCGAGTATTGATATTGG 327
Query 432 CTCAGAACTATCAGAACTGAAACAATTCGCCAAAGAATTTCCTCCTGAACTGAAAGGTTT 491
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 328 CTCAGAACTATCAGAACTGAAACAATTCGCCAAAGAATTCCCACCTGAACTGAAAGGTTT 387
Query 492 AGCCATCAACAACAATGAGGCAATACGTGCAGCTCACAACACATTTGCCAGGCCTGACCC 551
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 388 AGCCATCAACAACAATGAGGCGATACGTGCAGCTCACAACACATTTGCCAGGTCTGACCC 447
Query 552 GTCTTCCATCATGGAAGATGAAGAATTAGCTGCTGCGAAAAATCTAGACGAAGATGATGA 611
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GTCTTCCACCATGGAAGAAGAAGAATTAGCTGCTGCGAAAAATCTAGACGAAGATGATGA 507
Query 612 TGTGTATCATTACATCAGCTACTTACCTGTTGATGGTATCTTATATGAGCTCGATGGTCT 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TGTGTATCATTACATCAGCTACTTACCTGTTGATGGTATCTTATATGAGCTCGATGGTCT 567
Query 672 TAAAGAAGGACCCATTAGTCTTGGACAGTGTCTGGGTGAGCCAGAAGGAATCGAGTGGCT 731
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 568 CAAAGAAGGACCCATTAGTCTTGGACAGTGTCTGGGTGAGCCAGAAGGAACCGAGTGGCT 627
Query 732 CAGAATGGTCCAACCTGTGGTACAAGAGCAGATTGACCGGTATTCGCAGAATGAGATTCG 791
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 628 CAGAATGGTCCAACCTGTGGTACAAGAACGGATTGACTGGTATTCGCAGAATGAGATTCG 687
Query 792 GTTTAGTCTCTTAGCTGTAGTTAAGAACAGGAAAGAGATGTATGTAGCTGAACTGAAAGA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GTTTAGTCTCTTAGCTGTAGTTAAGAACAGGAAAGAGATGTATGTAGCTGAACTGAAAGA 747
Query 852 GTATCAAAGAAAGCGAGAGAGGGTTTTGCAGCAGTTAGGTGCTTTGCAAGCTGATAAATA 911
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 748 GTATCAAAGAAAGCGAGAGAGGATTTTGCAGCAGTTAGGTGCTTTGCAAGCTGATAAATA 807
Query 912 CGCTGAGAAAAGCAGTTACGAGGCTCTTGATAGAGAG-CTTTCGGAAGTCAATATCGGGA 970
|||||||||||||||||| |||||||| ||||| | ||||| ||||||||||||||||
Sbjct 808 CGCTGAGAAAAGCAGTTATGAGGCTCTCGATAG-GTCTCTTTCTGAAGTCAATATCGGGA 866
Query 971 TAGAGACTGTTTCACAAAAGATTGTAATGGAGGAGGAGAAATCTAAGAACTGGAAGAAAG 1030
||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 867 TAGAGACTGTTTCGCAGAAGATTGTATTGGAGGAGGAGAAGTCTAAGAACTGGAAGAAAG 926
Query 1031 AGAACATGAGAAGGAAACACAACTATGTCCCTTTCCTCTTCAACTTCCTCAAGATTCTTG 1090
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 927 AGAACATGAGAAGGAAACACAACTATGTCCCTTTCCTCTTCAATTTCCTCAAGATTCTTG 986
Query 1091 CTGACAAGAAGAAGCTGAAACCTCTCATTGCTAAGCACCATCCCTAAATCTGCTTTACCG 1150
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 987 CTGACAAGAAGAAGCTGAAACCTCTCATTGCTAAGCATAATCCCTAAATCTGCTTTGCCA 1046
Query 1151 GGATGTTAACTTGATAGAAATCAGATGTTTTAGTGATCTGAATACTGTGGTGGCGTGGTT 1210
||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1047 GGATGTTAACTTGGTAGAAATCAGATGTTTTAGTGATCTGAATAC--------CGTGGTT 1098
Query 1211 ATATGTAGCCAAACTTTAACTT 1232
||||||||| ||||||||||||
Sbjct 1099 ATATGTAGCAAAACTTTAACTT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5