BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16310.1 Length=1325 Score E Sequences producing significant alignments: (Bits) Value Ahg488484 jgi|Araly1|488484|fgenesh2_kg.6__1618__AT5G16310.1 1766 0.0 > Ahg488484 jgi|Araly1|488484|fgenesh2_kg.6__1618__AT5G16310.1 Length=1184 Score = 1766 bits (956), Expect = 0.0 Identities = 1055/1102 (96%), Gaps = 10/1102 (1%) Strand=Plus/Plus Query 132 CATGTCTTGGCTTCCTGTAGAATCTGATCCTGGTATTTTCACTGAGATTATACAACAAAT 191 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 28 CATGTCTTGGCTTCCTGTAGAATCTGATCCTGGTATTTTCACTGAGATTATACAACAGAT 87 Query 192 GCAAGTGAAAGGTGTGCAGGTTGAGGAATTGTATTCCTTGGACTTCAACTCTCTGGATGA 251 |||||||||||||||||| |||||||||||||||||||||||||| || |||||||| || Sbjct 88 GCAAGTGAAAGGTGTGCAAGTTGAGGAATTGTATTCCTTGGACTTTAATTCTCTGGAAGA 147 Query 252 AATAAGACCTGTCTATGGATTGATATTGCTTTACAAGTGGCGTCCAGAAGAAAAGGAGAA 311 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148 AATAAGACCTGTATATGGATTGATATTGCTTTACAAGTGGCGTCCAGAAGAAAAGGAGAA 207 Query 312 TCGTGTTGTCATCACAGAGCCAAACCCGAATTTCTTCTTTGCAAGCCAGATAATCAACAA 371 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 208 TCGTGTTGTTATCACAGAGCCAAACCCAAATTTCTTCTTTGCAAGCCAGATAATCAACAA 267 Query 372 TGCTTGTGCGACCCAAGCGATATTATCAGTCCTCATGAACTCTTCGAGTATTGATATTGG 431 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 268 TGCTTGTGCGACCCAAGCGATATTATCAGTTCTCATGAACTCTTCGAGTATTGATATTGG 327 Query 432 CTCAGAACTATCAGAACTGAAACAATTCGCCAAAGAATTTCCTCCTGAACTGAAAGGTTT 491 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 328 CTCAGAACTATCAGAACTGAAACAATTCGCCAAAGAATTCCCACCTGAACTGAAAGGTTT 387 Query 492 AGCCATCAACAACAATGAGGCAATACGTGCAGCTCACAACACATTTGCCAGGCCTGACCC 551 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 388 AGCCATCAACAACAATGAGGCGATACGTGCAGCTCACAACACATTTGCCAGGTCTGACCC 447 Query 552 GTCTTCCATCATGGAAGATGAAGAATTAGCTGCTGCGAAAAATCTAGACGAAGATGATGA 611 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 448 GTCTTCCACCATGGAAGAAGAAGAATTAGCTGCTGCGAAAAATCTAGACGAAGATGATGA 507 Query 612 TGTGTATCATTACATCAGCTACTTACCTGTTGATGGTATCTTATATGAGCTCGATGGTCT 671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 508 TGTGTATCATTACATCAGCTACTTACCTGTTGATGGTATCTTATATGAGCTCGATGGTCT 567 Query 672 TAAAGAAGGACCCATTAGTCTTGGACAGTGTCTGGGTGAGCCAGAAGGAATCGAGTGGCT 731 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 568 CAAAGAAGGACCCATTAGTCTTGGACAGTGTCTGGGTGAGCCAGAAGGAACCGAGTGGCT 627 Query 732 CAGAATGGTCCAACCTGTGGTACAAGAGCAGATTGACCGGTATTCGCAGAATGAGATTCG 791 ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| Sbjct 628 CAGAATGGTCCAACCTGTGGTACAAGAACGGATTGACTGGTATTCGCAGAATGAGATTCG 687 Query 792 GTTTAGTCTCTTAGCTGTAGTTAAGAACAGGAAAGAGATGTATGTAGCTGAACTGAAAGA 851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 688 GTTTAGTCTCTTAGCTGTAGTTAAGAACAGGAAAGAGATGTATGTAGCTGAACTGAAAGA 747 Query 852 GTATCAAAGAAAGCGAGAGAGGGTTTTGCAGCAGTTAGGTGCTTTGCAAGCTGATAAATA 911 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 748 GTATCAAAGAAAGCGAGAGAGGATTTTGCAGCAGTTAGGTGCTTTGCAAGCTGATAAATA 807 Query 912 CGCTGAGAAAAGCAGTTACGAGGCTCTTGATAGAGAG-CTTTCGGAAGTCAATATCGGGA 970 |||||||||||||||||| |||||||| ||||| | ||||| |||||||||||||||| Sbjct 808 CGCTGAGAAAAGCAGTTATGAGGCTCTCGATAG-GTCTCTTTCTGAAGTCAATATCGGGA 866 Query 971 TAGAGACTGTTTCACAAAAGATTGTAATGGAGGAGGAGAAATCTAAGAACTGGAAGAAAG 1030 ||||||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 867 TAGAGACTGTTTCGCAGAAGATTGTATTGGAGGAGGAGAAGTCTAAGAACTGGAAGAAAG 926 Query 1031 AGAACATGAGAAGGAAACACAACTATGTCCCTTTCCTCTTCAACTTCCTCAAGATTCTTG 1090 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 927 AGAACATGAGAAGGAAACACAACTATGTCCCTTTCCTCTTCAATTTCCTCAAGATTCTTG 986 Query 1091 CTGACAAGAAGAAGCTGAAACCTCTCATTGCTAAGCACCATCCCTAAATCTGCTTTACCG 1150 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 987 CTGACAAGAAGAAGCTGAAACCTCTCATTGCTAAGCATAATCCCTAAATCTGCTTTGCCA 1046 Query 1151 GGATGTTAACTTGATAGAAATCAGATGTTTTAGTGATCTGAATACTGTGGTGGCGTGGTT 1210 ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 1047 GGATGTTAACTTGGTAGAAATCAGATGTTTTAGTGATCTGAATAC--------CGTGGTT 1098 Query 1211 ATATGTAGCCAAACTTTAACTT 1232 ||||||||| |||||||||||| Sbjct 1099 ATATGTAGCAAAACTTTAACTT 1120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49559792100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5