BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16320.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488485 jgi|Araly1|488485|fgenesh2_kg.6__1619__AT5G16320.1 1857 0.0
> Ahg488485 jgi|Araly1|488485|fgenesh2_kg.6__1619__AT5G16320.1
Length=1432
Score = 1857 bits (1005), Expect = 0.0
Identities = 1303/1440 (90%), Gaps = 48/1440 (3%)
Strand=Plus/Plus
Query 1 AAACAATGACGGCGAGTGAGACTATCGCCACCGCGATAAATCAGATTGATGAGAAGAAGG 60
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAACAATGACGACGACTGAGACTATCGCCACCGCGATAAATCAGATTGATGAGAAGAAAG 60
Query 61 AAAAGCTAAAGAAAGCTTTCGACGATCTTCAAGCTCATCGCTCTCTCCTTTCACCGTCTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AAAAGCTAAAGAAAGCTTTCGACGATCTTCAAGCTCATCGCTCTCTCCTTTCACCGTCCT 120
Query 121 TCTCACTTTCCTGGTCTGAGATCGATTCTCACTTTTCCTCTCTCCAATCCTCCCTTGCTA 180
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 121 TCTCTCTTTCCTGGTCTGAGATCGATTCTCACTTTTCCTCCCTCCAATCCTCCCTCGCTA 180
Query 181 GCCGTTTCCGCCTCCTCCACTCTACATCTCCTTTGGAACATGATTCGTATAGAATCGACG 240
|||||||||||||||||| |||||| |||||||| || ||||||||| |||| |||||
Sbjct 181 ACCGTTTCCGCCTCCTCCAATCTACAGCTCCTTTGCAAGATGATTCGTTTAGACTCGACA 240
Query 241 CTTCTGATGCAGGGAAATCGTCGTCTTCGGAGGAGGTATCGGAGCAACCCGTTGTTGAGC 300
||||| | | | || || ||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCT-A--C-------T--TCTTCGTCGGAGGAGGTATCGGAGCAACCCGTTGTTGAGC 288
Query 301 CGGAGTTGAGAGCCTTGTGTGAGAAGATTGACGGAATTGGTTTGATTAAGTATTTGATTA 360
||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 289 CGGAGTTGATAGCGTTGTGTGAGAAGATGGACGGAATTGGTTTGAGCAAGTATTTGATT- 347
Query 361 GGAT--ATGGGATGATGAAACTCCTCTCAATCAGGAAGTTTCTGCAGCGATTCGTTACTC 418
| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 348 -GTTCAATGGGATGATGACGCTCCTCTCAATCAGGAAGTTTCTGCAGCGATTCGTTACTC 406
Query 419 TCCGGATACGGCGTCCATGGTGCTTGACGCGATTGAAGGTTCGAACTACACACCGTCATC 478
||||||| ||||||||| | | | |||| | | |||| ||||| ||
Sbjct 407 TCCGGATCCGGCGTCCA-------T---G-G--TGAA----C---C-ACACTCCGTCGTC 445
Query 479 ATCGGGAAGATCATTCGATGTAAGGAGAGTTTTCGTTTTGTTAATGGAAGTTTTGATTGA 538
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 ATCGGGAAAATCATTCGATGTAAGGAGAGTTTTCGTTTTGTTAATGGAAGTTTTGATTGA 505
Query 539 GA-TCAATGCGAATATCACTGTTGATACGAGAAATAGAGCTAAGAAACTGGCTTACCATT 597
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 506 GAGT-AATGCGAATATCACTGTTGATACGAGAAATAGAGCTAAGAAACTGGCTTACGGTT 564
Query 598 GGAAATCTAAGGTTGGTGTC-AAGCCTTTCGAGGCGTTAGTGTTTCTGCATTTGGTCGCA 656
||||| | ||| | | | | ||||||||||||||||| |||||||||||||| ||||||
Sbjct 565 GGAAAACGAAGATAGAT-ACTAAGCCTTTCGAGGCGTTGGTGTTTCTGCATTTAGTCGCA 623
Query 657 GCTTTTGAATTAGGATCAGAATTTGACACAGAGGAGCTTTCTGATTACGTTTTCATGATC 716
||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 624 GCTTTTGAATTGGGATCAGAATTTAACTCAGAGGAGCTTTCTGATTACGTTTTCATGATC 683
Query 717 GCTAAGTATAAGCAAGCAACTTTGGTTTGTAACAAGATTGGTGTAGATAGGAAAAGAGTT 776
|||||||| || |||||||||| ||| ||||||||||||||| |||||||| |||||||
Sbjct 684 GCTAAGTACAAACAAGCAACTTCGGTGTGTAACAAGATTGGTTTAGATAGGGAAAGAGTC 743
Query 777 GGGAAACTCATCAAGACTCTCTTGGATTCTGGTAAACCAATTTTAGCAGTCAAATTCATG 836
|||| ||||||||||| ||| |||||||||| ||| |||| || |||||||||||||||
Sbjct 744 GGGACACTCATCAAGAAACTCATGGATTCTGGCAAATCAATCTTGGCAGTCAAATTCATG 803
Query 837 TATGAGTGTGGGATGACTGATGAATTTGAGCCAATCCCTGTTTTGAAATCTTACATTAAG 896
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 804 TATGAGTGTGGGATGACTGATGAATTCGAGCCAATCTCTGTTTTGAAATCTTACATTAAG 863
Query 897 GACTGTAGAGAAGCTGCTCTTAGAGTTTGCGTGGAAGATAACTACTCT-CTCAAGTCGCA 955
|||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 864 GACTCTAGAGAAGCTGCTCTTAGAGTTTGCGTGGAGGATAACTACTCTAC-CAAGTCGCA 922
Query 956 GAACGAAGCC-TCTGATAAAGAAGTCAGTGCCTTGAAACCATTGATCAAAATCATCAAAG 1014
|||||||||| | |||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 923 GAACGAAGCCAT-TGATAAAGAAGTCAGTGCAATGAAAGCAGCGATCAAAATCATCAAAG 981
Query 1015 ATCAGAACCTTGAATCAGAGTTTACTCAGGAGAAAGTTGAGGAACGTGTAGAAGAGCTGG 1074
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 982 ATCAGAACCTTGAATCCGAGTTTACTCAGGAGAAAGTTGAGGAGCGTGTAGAAGAGCTGG 1041
Query 1075 AGAAAAATAAGGCATTGAGGAAACGCAACACGACTAATCCTCCCAAGCAAGAGCCACAGC 1134
|||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1042 AGAAGTATAAGGCACTGAGGAAACGCAACACCACTAATCCTCCCAAGGAAGAGCCACAGC 1101
Query 1135 AAAAGGGGAAAAAGCGGACTAGAGACTGCAAAAATGGGTCACAAGTTCCAGTTCCGAGTC 1194
||||||||||||| ||||| | |||||| |||||| |||||||||||| ||||||||
Sbjct 1102 AAAAGGGGAAAAAACGGACGCGTGACTGC---AATGGGACACAAGTTCCAGCTCCGAGTC 1158
Query 1195 AGCAGCTACTTTCTAGACCAGAAGCTCTTCTTATGCCTGAGCATAGTCATCATGGCTTAC 1254
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1159 AGCAGCTACTTTCTAGACCAGAAGCTCTGCTTATGCCTGAGCATAGTCATCATGGCTTAC 1218
Query 1255 AGTTGAACCCTTATGGTCTTATGACCTCAGCATTTTCTGGTGTTGTTGTGAACCCATTAA 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 AGTTGAACCCTTATGGTCTTATGACCTCAGCATTTTCTGGTGTTGTTGTGAACCCATTAG 1278
Query 1315 CTGGGCTCTTTGGTTCAGGTGCAACTCCTCAATCTCTTTACTATGCTCAGCAAACTGGAT 1374
| |||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1279 CCGGGCTCTTTGGTTCCGCTGCAACTCCTCAACCTCTTTACTATGCTCAGCAAACTGGAT 1338
Query 1375 ATGTGTTGCCGCCTCAATACCACCCGCCTTATTATTCTCAGTAGCTAGCTGCATCTCGAC 1434
||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1339 TTGTATTGCCGCCTCAATACCACCCACCTTATTATTCTCAGTAGCTAGCAGCATCTCGAC 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5