BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16330.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893546 jgi|Araly1|893546|Al_scaffold_0006_1542 1114 0.0
> Ahg893546 jgi|Araly1|893546|Al_scaffold_0006_1542
Length=729
Score = 1114 bits (603), Expect = 0.0
Identities = 687/728 (94%), Gaps = 3/728 (0%)
Strand=Plus/Plus
Query 3 GGATTCCCACTTTCTGGAGAAGATAGGATTTATCTCAAACCAAATCTCCAGAGATAAACT 62
||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||
Sbjct 4 GGA-TCCCACTTTCTAGAGAAGATGGGATTTATCTCCAACCAAATCTCCAGAGATGAACT 62
Query 63 TAAACCAGGAGATCACATCTATTCATGGCGTAACGCTTATATCTACTCTCATCACGGAAT 122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CAAGGCAGGAGATCACATCTATTCATGGCGTAACGCTTATATCTACTCTCATCACGGAAT 122
Query 123 ATATATAGGCGATGAGAAAGTCATTCATTTCACTTGTGGAGGTGGTCTAGAAACTGGAAC 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ATATATAGGCGATGAGAAAGTCATTCATTTCACTTGTGGAGGTGGTCTAGAAACTGGAAC 182
Query 183 TGGGACCTTCTTGGACAAGATCGTCGTTAGTGTCATCCCTAATCATAAAGGAGACAATCC 242
||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 183 CGGGACCTTCTTGGACAAGATCCTCGTTAGTGTAATCCCGAATCATAAAGGAGACAATCC 242
Query 243 TTGTTCTAATTGTGAAGAGCAATTGAATCTCGAAGGTGTAATCTCTTCTTGCCTTGACTG 302
|||| ||||||||| ||||| || |||| |||| |||||||||||||| |||||||||||
Sbjct 243 TTGTCCTAATTGTGGAGAGCGATCGAATGTCGATGGTGTAATCTCTTCATGCCTTGACTG 302
Query 303 CTTTCTCGCCGGAGGAAACATCTATCT-TTTCGAGTACAGTGTCTCTCCAGCTGCATTTA 361
||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 303 CTTTCTCTCCGGAGGAAACATCTATCTCTTT-GAGAACAGTGTCTCTCCAGCTGCATTTA 361
Query 362 TCGCCAAACCTCGACGCGGCACATGCACTATAGCACCTTCGGATCCCTGCGATGAAGTCA 421
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 362 TTGCCAAACCTCGACGCGGCACATGCACAATAGCACCTTCGGATCCCTGTGATGAAGTCA 421
Query 422 TTTCCCGCGCCAAATACCTCTTATTGCGGAATGGGTTTGGTGATTACCATGCTTTGGAAA 481
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 422 TTTCCCGCGCCAAATACCTCTTATTCCGGAATGGGTTTGGTGATTACCACGCTTTGGAAA 481
Query 482 ACAATTGTGAAGATTTTGCAATATATTGTAAAACAAGCTTGCTGGTCGGAAAAGACTATG 541
| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 482 ATAATTGTGAAGATTTTGCAATATATTGTAAAACTAGCTTGCTGGTCGGAAAAAACTATG 541
Query 542 TGTTGGGAAGGGGCGGTCAAGCCAGCTCAGTGAGTGCAGCTGCGTGGCTTGCGCAACTTA 601
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 542 TGTTGGGAAGGGGAGGTCAAGCCAGCTCGGTTAGTGCAGCTGCGTGGCTTGCGCAACTTA 601
Query 602 GTCCTTTCGGCAGCAAAGCTATTCAGCTATTTGCAGATATTGGTATGAGAAAGGATGCTA 661
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 602 GTCCTTTCGGCAGCAAAGCTATTCAGCTCTTTGCAGATATTGGTGTGAGAAAGGATGCTA 661
Query 662 TTAAGGTGCCCGTCGAGAGCCTCGTTCCTCGCGCATATGCTACTGGTACCTCTAGAAATA 721
||| ||||||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 662 TTAGGGTGCCCGTGGAAAGCCTCGTTGCTCGCGCATATGCTACTGGTACCTCTAGAAATA 721
Query 722 GAAGGTGA 729
|||| |||
Sbjct 722 GAAGTTGA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5