BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16350.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488487 jgi|Araly1|488487|fgenesh2_kg.6__1621__AT5G16350.1 2172 0.0
Ahg488089 jgi|Araly1|488089|fgenesh2_kg.6__1223__AT5G12420.1 1580 0.0
Ahg350432 jgi|Araly1|350432|fgenesh1_pg.C_scaffold_6001025 165 1e-39
> Ahg488487 jgi|Araly1|488487|fgenesh2_kg.6__1621__AT5G16350.1
Length=1484
Score = 2172 bits (1176), Expect = 0.0
Identities = 1366/1456 (94%), Gaps = 19/1456 (1%)
Strand=Plus/Plus
Query 73 GAGAATGAAGAATGAGGAGGAGGAGCCGCTCAGCCCGATGGCTCGTGTATTCCAATCGCC 132
||||||| |||| | ||||||||||||||||| |||||||| ||||| |||||||| ||
Sbjct 30 GAGAATGCAGAAAAATGAGGAGGAGCCGCTCAGTCCGATGGCGCGTGTGTTCCAATCACC 89
Query 133 GGACATAGACTTATGTGCCATCATCAACATTGGGTTCAAAACAAAAATTAATCCCGACGT 192
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 90 GGGCATAGACTTATGTGCCATCATCAACATTGGTTTCAAAACAAAAATTAATCCCGACGT 149
Query 193 TGTTCTTGATGCTTTGAAGCAAAATGTTTACAAGCATCCTCGTTTCTCCAGCAAACTGTC 252
||||||||||||||||||||||||||| |||||||| || || | | |||
Sbjct 150 TGTTCTTGATGCTTTGAAGCAAAATGTCTACAAGCA---TC----CT----C--A--GTC 194
Query 253 TGAAAATGGTGAAAAATGGATCGAGACCGAAGTCAATGTAGAAGATCATGTAATCGTACC 312
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 195 TGAAAATGGTGAAAAATGGATTGAGACCAAAGTCAATGTAGAAGATCATGTAATCGTACC 254
Query 313 ATACATAGATCCAGAAGATATATGTGAAGGTGGACAAAGCTTCGTCGATGATTATATCTC 372
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 255 ATACATAGATCCAGAAGAGACATGTGAAGTTGGACAAAGCTTCGTCGATGATTATATCTC 314
Query 373 ACGTCTCACATTGATTCCTCTTGATAGATCAAGACCTTTGTGGGACATTCACATCCTTAA 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 315 ACGTCTCACATTGATTCCTCTTGATAGATCAAGACCTTTGTGGGACATTCACATTCTTAA 374
Query 433 TGTCAAAACCTCATATGCTGAAGCAGTCGGTGTAATAAGATTTAACCATGCGTTGGCAGA 492
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TGTCAAAACCTCAGATGCTGAAGCAGTCGGTGTAATAAGATTTAACCATGCGTTGGCAGA 434
Query 493 TGGAATGTCCTTCATTTCCCTAGTTCTTGCATGTACCCATAAAACATCAAATCCTGACAT 552
||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||
Sbjct 435 TGGAATGTCCTTCATTTCCCTCGTGCTCGCATGTACCCATAAAACATCAAATCCAGACAT 494
Query 553 GTTGTCTACTGCTATTCCTTCGGTGAAACGGCGAAGCACGGTGTCACATAGCC-Taaaaa 611
|||| |||||||||||||||| ||||| ||||||||||| ||||||||||||| | ||||
Sbjct 495 GTTGCCTACTGCTATTCCTTCCGTGAAGCGGCGAAGCACAGTGTCACATAGCCTTGAAAA 554
Query 612 aaaCCGGCTGGTTCTTAACGGCAATATTCACCATTGGTTCTACAATGAGACTAATTTGGA 671
||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 555 AAA-TGGCAGGTTCTTAAGGGCAATATTCACCATTGGTTCTACAATGAGACTGATTTGGA 613
Query 672 ATACATTGGTAGATATGTTCTTGCTTTTTGCTACTATGTTGTTTCTGAAGGATACAAAAA 731
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 614 ATACATTGGTAGATATGTTCTTGCTTTTTGCGACTATGTTGTTTTTGAAGGATACAAATA 673
Query 732 CACCACTAAAAGGCGGTGCGAATGTCAGGAGCAATCCAAAGACATTTTATCACCGAAATA 791
| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 674 CGCCACTAAAAGGCGGTGCGAATGTCAGGAGCAATCCAAAGAGATTCTATCACCGAAATA 733
Query 792 TCTCTCTAGATGACATTAAACTTATCAAGAACGCTATGAACATGACTATCAACGATGTTC 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TCTCTCTAGATGACATTAAACTTATCAAGAACGCTATGAACATGACTATCAACGATGTTC 793
Query 852 TACTCGGAATTACACAAGCTGCTCTTTCTAGCTATTTGAACCGACGATATGAACACGAAA 911
||||||||||||||||||| || |||||||||||||||||||||| ||| ||||| | |
Sbjct 794 TACTCGGAATTACACAAGCCGCACTTTCTAGCTATTTGAACCGACAATACGAACAAGCCA 853
Query 912 ATAATAATGAGGAGGATGGAGTATTGACTTCATATACAAACAATCTTCCAGATCGAATAC 971
| ||||||||||||||||||| ||||||||||||| | ||||||||||| ||| | ||||
Sbjct 854 AGAATAATGAGGAGGATGGAGCATTGACTTCATATCCGAACAATCTTCCGGATGGCATAC 913
Query 972 GATTTCGTGCAGGTTGTACGGTAAACCTAAGGTCAGACATCGGGTTCAAGCCTTTGGCAG 1031
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 914 GATTTCGTGCAGGTTGTACCGTAAACTTAAGGTCAGACATCGGGTTCAAGCCTTTGGCAG 973
Query 1032 AAATGATGGTCAAGGATTCAAAATGCAGATGGGGAAACTACTTTAGCTTTATTATTTTAC 1091
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 974 AAATGATGGTCAAGGATTCAAAATGCAGATGGGGAAACTACTTTAGCTTTTTTATTTTAC 1033
Query 1092 CATTATCGATTAGTTTAGAAACCGATCCATTGGTTTATCTAAACAAATCCAAAGCTATGA 1151
| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1034 CGTTATCGATTGGTTTAGAAACCGATCCATTGGTTTATCTAAAAAAATCCAAAGCTATGA 1093
Query 1152 TGGCTCGAACGAAGCACTCTTATCAAGCAGCTCTAACGTATTTTCTTATCAAAATATCCC 1211
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TGGCTCGAAAGAAGCACTCCTATCAAGCAGCTCTAACGTATTTTCTTATCAAAATATCCC 1153
Query 1212 TAAAAGTGTTAGGAGCTAAGGCAACGACATCATTATTCAATCAACACTTGATGAACATAA 1271
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1154 TAAAAGTGTTAGGAGCTAAGGCAACAACATCATTATTCATTCAACACTTGATGAACATAA 1213
Query 1272 CGACATGTGTTTCAAACGTTATGGGTCCTATGGAAGAAATCAGTTTCAATGGCCATCCTG 1331
| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1214 CAACATGTGTTTCAAACGTTATGGGCCCTATGGAAGAAATCAGTTTCCATGGCCATCCTG 1273
Query 1332 TCGCTTACATTTCTCCAAGCTCTTATGGACACTCACATGCATTGTTGATACATTACACAA 1391
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TCGCTTACATTTCTCCAAGCGCTTATGGACACTCACATGCATTGTTGATACATTACACAA 1333
Query 1392 GTTATGCTG-GTGAAATGACAATTACTATAACGGTTGATCCTACTGTAATACCGGATCCT 1450
||||||||| | ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1334 GTTATGCTGAG-GAAATGACAATCACGATAACGGTTGATCCTACTGTAATACCGGATCCT 1392
Query 1451 CACAAGATTTGTGATGATATGGAAGAATCACTGAAAACAATGAAAGCTGTTCTCTGGGAA 1510
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1393 CACAAGATTTTTGATGATATGGAAGAATCACTGAAAACAATGAAAGCTGTTCTTTGGGAA 1452
Query 1511 AGAGGGTTACTCAAAG 1526
||||| |||||| |||
Sbjct 1453 AGAGGTTTACTCTAAG 1468
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 16 AACTTAATAAATAGCGTTGGAGAGAGAGA 44
|||||||||||||||||||||||||||||
Sbjct 1 AACTTAATAAATAGCGTTGGAGAGAGAGA 29
> Ahg488089 jgi|Araly1|488089|fgenesh2_kg.6__1223__AT5G12420.1
Length=1704
Score = 1580 bits (855), Expect = 0.0
Identities = 1282/1483 (86%), Gaps = 49/1483 (3%)
Strand=Plus/Plus
Query 66 GGGAAA-GGAGAATGAAGAATGAGGAGGAGGAGCCGCTCAGCCCGATGGCTCGTGTATTC 124
|||||| ||||||||| || | ||||||||||||||| ||||||||||| |||||||||
Sbjct 1 GGGAAAGGGAGAATGACTAACGGGGAGGAGGAGCCGCTTAGCCCGATGGCGCGTGTATTC 60
Query 125 CAATCGCCGGACATAGACTTATGTGCCATCATCAACATTGGG-TTCAAAACAAAAATTAA 183
|||||||||| |||||||||||||||| | | || || |||| |||||||| || |||||
Sbjct 61 CAATCGCCGGGCATAGACTTATGTGCCGTGACCATCA-TGGGTTTCAAAACCAAGATTAA 119
Query 184 TCCCGACGTTGTTCTTGATGCTTTGAAGCAAAATGTTTACAAGCATCCTCGTTTCTCCAG 243
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 120 TCCCGACGTTGTTCTTGATGCCTTGAAGCAAAATGTCTCCAAGCATCCTCGTTTCTCCAG 179
Query 244 CAAACTGTCTGAAAATGGTGAAAAATGGATCGAGACCGAAGTCAATGTAGAAGATCATGT 303
|| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 180 CATACTGTCTGATAATGGTGCAAAATGGATCGAGACCGAAGTTAATGTAGAAGATCATGT 239
Query 304 AATCGTACCATACATAGATCCAGAAGATATATGTGAAGGTGGACAAAGCTTCGTCGATGA 363
||| |||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||
Sbjct 240 AATTGTACCATACATAGACCCAGAAGAGATAGGTGAAGGTGGACAAAGCTTCATCGATGA 299
Query 364 TTATATCTCACGTCTCAC-ATTGATTCCTCTTGATAGATCAAGACCTTTGTGGGACATTC 422
|||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 300 TTATATGTCACGTCTCACGA-TGATTCCTCTTGATAGATCAAGACCCTTGTGGGACATTC 358
Query 423 ACATCCTTAATGTCAAAACCTCATATGCTGAAGCAGTCGGTGTAATAAGATTTAACCATG 482
|||||||||| |||||||||||| ||||||||||||| || | ||||||| | |||||
Sbjct 359 ACATCCTTAACGTCAAAACCTCAGATGCTGAAGCAGTTAGTTTTATAAGATCTCACCATT 418
Query 483 CGTTGGCAGATGGAATGTCCTTCATTTCCCT-AGTTCTTGCATGTACCCATAAAACATCA 541
|||||| ||||||||||||||| ||||| || | | || |||||||||||||||||||||
Sbjct 419 CGTTGGGAGATGGAATGTCCTTGATTTCTCTCA-TGCTCGCATGTACCCATAAAACATCA 477
Query 542 AATCCTGACATGTTGTCTACTGCTATTCCTTCGGTGAAACGGCGAAG-CACGGTGTCACA 600
|||| |||||||| || | |||||||||| | |||||||||| || |||| |||| ||
Sbjct 478 GATCCAGACATGTTTTCAAATGCTATTCCTCCCATGAAACGGCG-AGCCACGTTGTCGCA 536
Query 601 TAGCC-Taaaa-aaaaCCGGCTGGTTCTTAACG-GCAATATTCACCATTGGTTCTACAAT 657
|||| ||||| ||| ||||||||||| | | | |||||||||||||||||||||||
Sbjct 537 CAGCCTTAAAACCAAA--GGCTGGTTCTTGA-GATCGATATTCACCATTGGTTCTACAAT 593
Query 658 GAGACTAATTTGGAATAC-ATTGGTAGATATGTTCTTGCTTTTTGCTACTATGTTGTTTC 716
|||||| |||||||||| | | |||||||||| |||||||| || ||| ||||||||
Sbjct 594 GAGACTGCTTTGGAATACAACT-ATAGATATGTTGTTGCTTTTGGCGACTGTGTTGTTTT 652
Query 717 TGAAGGATACAAAAACACCACTAAAAGGCGGTGCGAATGTCAGGAGCAATCCAAAGACAT 776
|||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||||| ||
Sbjct 653 TGAAGGATACAAAAACGCCACTAAAAGGCGGGGCGGATGTCAGAAACAATCCAAAGAGAT 712
Query 777 TTTATCACCGAAATATCTCTCTAGATGACATTAAACTTATCAAGAACGCTATGAACATGA 836
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTTATCACCGAATTATCTCTTTAGATGACATTAAACTTATCAAGAACGCTATGAACATGA 772
Query 837 CTATCAACGATGTTCTACTCGGAATTACACAAGC-TGCTCTTTCT-AGCTATTTGAACCG 894
||||||||||||||||||| ||||||||| |||| | |||||||| | ||||||||||||
Sbjct 773 CTATCAACGATGTTCTACTTGGAATTACAAAAGCCT-CTCTTTCTCA-CTATTTGAACCG 830
Query 895 ACGAT-ATGAACACGAAAATAATAATGAGGAGGATGGAGTATTGACTTCATATACA-AAC 952
|| || |||| || ||| | | ||||||||||||| |||||| || ||| || |||
Sbjct 831 AC-ATTATGA-CAAGAAGA-AG----GAGGAGGATGGAGCATTGACATCGTAT-CAGAAC 882
Query 953 AATCTTCCAGATCGAATACGATTTCGTGCAGGTTGTACGGTAAACCTAAGGTCAGACATC 1012
|||||||| ||| ||||||||||||||| | |||||| ||||| |||||||||||||||
Sbjct 883 AATCTTCCTGATGGAATACGATTTCGTGTTGCTTGTACAGTAAATCTAAGGTCAGACATC 942
Query 1013 GGGTTCAAGCCTTTGGCAGAAATGATGGTCAAGGATTCAAAATGCAGATGGGGAAACTAC 1072
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 943 GGGTTCAAGCCTTTGGCAGATATGATGGTGAAGGATTCAAAATGCAGATGGGGAAACTAC 1002
Query 1073 TTTAGCTTTATTATTTTACCATT-ATCGATTAGTTTAGAAACCGATCCATTGGTTTATCT 1131
|| ||||||||| |||| ||||| | | || ||||| |||||||||||||||||||| |
Sbjct 1003 TTCAGCTTTATTTTTTTGCCATTCACC-ATCGGTTTACAAACCGATCCATTGGTTTATTT 1061
Query 1132 AAACAAA-TCCAAAGCTATGATGGCTCGAACGAAGCACTCTTATCAAGCAGCTCTAACGT 1190
||| || || ||| | ||||||||||||| ||||||||||||||| || |||||| ||
Sbjct 1062 AAA-AATGTCAAAATCCATGATGGCTCGAAAGAAGCACTCTTATCACGCGGCTCTAGTGT 1120
Query 1191 ATTTTCTTATCAAAATA-TCCCTAAAAGTGTTAGGAGCTAAGGCAAC-GACATCATTATT 1248
||||| | |||||||| ||| |||||||||| || || |||||| | | || ||||||
Sbjct 1121 ATTTTATCATCAAAATCGTCC-TAAAAGTGTTTGGCGCGAAGGCAGCAG-CAGAATTATT 1178
Query 1249 CAATCAACACT-TGATGAACATAACGACATGTGTTTCAAACGTTATGGGTCCTATGGAAG 1307
||| || | ||| ||||| ||||||||||||||||||||| || || || |||||||
Sbjct 1179 TGATCGAC-CGGTGAGGAACACAACGACATGTGTTTCAAACGTCATTGGCCCCATGGAAG 1237
Query 1308 AAATCAGTTTCAATGGCCATCCTGTCGCTTACATTTCTCCAAGCTCTTATGGACACTCAC 1367
||||||||||| ||||||||||||| ||||||| ||||||| ||||| ||||||||||
Sbjct 1238 AAATCAGTTTCCGTGGCCATCCTGTCTCTTACATCGCTCCAAGTTCTTACGGACACTCAC 1297
Query 1368 ATGCATTGTTGATACATTACACAAGTTATGCTGG-TGAAATGACAATTAC-TATAACGGT 1425
||||| |||||||||||| | |||||||| || | |||||| |||| | | | || |
Sbjct 1298 ATGCAATGTTGATACATTTGATGAGTTATGC-GGATAAAATGATAATTTCGT-TGGCG-T 1354
Query 1426 -TGATCCTACTGTAATACCGGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGA 1484
||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1355 ATGATCCTACCGTCATACCGGACCCTCACAAGATTTGCGATGATATGGAAGAATCACTGA 1414
Query 1485 AAACAATGAAAGCTGT-TCTCTGGGAAAGAGGGTTACTCAAAG 1526
|| | ||||||||| | ||| || ||||||||||||||| |||
Sbjct 1415 AAGCGATGAAAGCT-TCTCTATGCGAAAGAGGGTTACTCTAAG 1456
> Ahg350432 jgi|Araly1|350432|fgenesh1_pg.C_scaffold_6001025
Length=957
Score = 165 bits (89), Expect = 1e-39
Identities = 133/154 (86%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 1370 GCATTGTTGATACATTACACAAGTTATGCTGGTGAA-ATGACAAT-TACTATAACGGTTG 1427
|||||| || | |||| || ||||||||| || ||| |||| ||| | | || ||||||
Sbjct 802 GCATTGCTGGTGCATTTCATAAGTTATGC-GGAGAAGATGATAATCT-CGATGGCGGTTG 859
Query 1428 ATCCTACTGTAATACCGGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAA 1487
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ATCCTACTGTCATACCAGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAG 919
Query 1488 CAATGAAAGCTGTTCTCTGGGAAAGAGGGTTACT 1521
| |||||| || ||||||| ||||||||||||||
Sbjct 920 CGATGAAAACTATTCTCTGTGAAAGAGGGTTACT 953
Score = 126 bits (68), Expect = 5e-28
Identities = 133/163 (82%), Gaps = 9/163 (6%)
Strand=Plus/Plus
Query 1076 AGCTTTATTATTTTACCATT-ATCGATTAGTTTAGAAACCGATCCATTGGTTTATCTAAA 1134
||||||||| |||| || || | | || |||||||||||||||||||||||||||||||
Sbjct 647 AGCTTTATT-TTTTGCCGTTCA-CCATCGGTTTAGAAACCGATCCATTGGTTTATCTAAA 704
Query 1135 CAAA-TCCAAAGCTATGATGGCTCGAACGAAGCACTCTTATCAAGC-AGCTCTAACGTAT 1192
|| || ||| | ||||||||||||| ||||||||||||||| || | ||||| |||
Sbjct 705 -AATGTCAAAATCCATGATGGCTCGAAAGAAGCACTCTTATCACGCGA-CTCTAGTATAT 762
Query 1193 TTTCTTATCAAAATA-TCCCTAAAAGTGTTAGGAGCTAAGGCA 1234
||| | |||||||| | | |||||||||| || || ||||||
Sbjct 763 TTTATCATCAAAATCGTTC-TAAAAGTGTTTGGCGCCAAGGCA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5