BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16360.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488488 jgi|Araly1|488488|fgenesh2_kg.6__1622__AT5G16360.1 1531 0.0
Ahg893546 jgi|Araly1|893546|Al_scaffold_0006_1542 366 2e-100
> Ahg488488 jgi|Araly1|488488|fgenesh2_kg.6__1622__AT5G16360.1
Length=997
Score = 1531 bits (829), Expect = 0.0
Identities = 947/1002 (95%), Gaps = 16/1002 (2%)
Strand=Plus/Plus
Query 38 AGAAAACCCAACTCATTAAGCAAACTCGGAt---c-tc-cttctcttctctctctcGCT- 91
||||||||||||||||||||||||||||||| | || |||||| |||||||||||||
Sbjct 1 AGAAAACCCAACTCATTAAGCAAACTCGGATCAACTTCTCTTCTC-TCTCTCTCTCGCTA 59
Query 92 ----AAGAACTATAGAAGATGGGATTGTTCTCCCACAAGATCTCCAGAGATGATCTGAAA 147
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 AGAAAAGAAGTATAGAAGATGGGATTGTTCTCCCACAAGATCTCGAGAGATGATCTGAAA 119
Query 148 CCAGGCGATCACATCTATTCTTGGCGTAACGCTTATATCTACTCTCATCACGGAGTCTAC 207
|||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct 120 CCAGGCGATCACATCTATTCATGGCGTAACGTTTATATCTACTCTCATCACGGAATCTAC 179
Query 208 GTAGGAGATGAGAAAGTCATTCATTTCACTCGTGGAGGTGGTCTAGAATTCGGAACAGGA 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTAGGAGATGAGAAAGTCATTCATTTCACTCGTGGAGGTGGTCTAGAATTCGGAACAGGA 239
Query 268 ACAGTTTTGGACAAGATCATCGATATTTCAATACCAAATCATGGAAGAAGAGACAAAAAG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 240 ACAGTTTTGGACAAGATCATCGATATTTCAATACCAAATCATGGAAGAAGAGATAATAAG 299
Query 328 TGTATTGATTGTGGAGATCAATCCAATCTCGGTGGTGTAATCTCTTCTTGTCTTGATTGT 387
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTCTTGATTGTGGAGATCAATCCAATCTCGGTGGTGTAATCTCTTCTTGTCTTGATTGT 359
Query 388 TTTCTCGCCGGAGGAAATCTACATCTCTTCGAATACAGTGCCTCTCCGTCTATCTTTCTA 447
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 360 TTTCTCGCCGGAGGAAATCTTTATCTCTTCGAATACAGTGCCTCTCCGTCAATCTTTCTA 419
Query 448 GCCAAACGAGGTGGTACATGCACGATAGCATCTTCAGATCCTTGTGATGAAGTCATTTCT 507
|| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 GCTAAAAGAGGTGGTACATGCACGGTAGCATCTTCAGATCCTTGTGATGAAGTCATTTCT 479
Query 508 CGTGCTAAATTTCTCCTTTTGCAAAATGGATTTGGTGAGTACGATCTTTTAGACAACAAT 567
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 CGTGCTAAATTTCTTCTTTTGCAAAATGGGTTTGGTGAGTACGATCTTTTAGACAACAAT 539
Query 568 TGTGAAGATTTTGCGATTTATTGCAAAACTGGTTTGTTTGTGTTGTCGGTTGCTACCAAG 627
|||||||||||||| || || |||| ||||||||||||||||| |||||||||||||||
Sbjct 540 TGTGAAGATTTTGCCATCTACTGCAGTACTGGTTTGTTTGTGTTATCGGTTGCTACCAAG 599
Query 628 TTTGGATGTAGTGGTCAAGCCAATTCTGTATCTGCAGCTGGTGGTGTTGTTGCTTTGACG 687
||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 600 TTTGGATGTAGTGGTCAAGCCAATTCTCTGTCTGCAGCTGGTGGTGTTGTCGCTTTGACG 659
Query 688 CTTAAGGTTTTAGGTGTGAAAAAGAAGAGTAGTAGTGGTCATGAAGATGACTCTGTGGTT 747
||||||||||||||||||||||||||||||||| | | |||||| ||||| |||||||||
Sbjct 660 CTTAAGGTTTTAGGTGTGAAAAAGAAGAGTAGT-G-G-TCATGAGGATGATTCTGTGGTT 716
Query 748 TCTGTTGTAAACCAGTTTATTTCTTCGACAGTTAAATATGTAGTTCCTGGTATTGGTGGT 807
|||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 717 TCTGTTGTTAACCAGGTTATTTCTTCGGCGGTTAAATATGTAGTTCCTGGTATTGGTGGG 776
Query 808 TTGGCTTTGGCTGAATATGGTAATTACTGTATTGGTCGTCTGTTTTACGACATTGGTGTT 867
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATGGCTTTGGCTGAATATGGTAATTACTGTATTGGTCGTCTGTTTTACGACATTGGTGTT 836
Query 868 AGAAAAGATGCTTGTAAGGTTTCTGTTGAAGAGCTTGTAGCATTTGTAGGAGCCAAGCAA 927
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 837 AGAAAAGATGCGTGTAAGGTTTCTGTTGAAGAGCTTGTTGCATTTGTAGGAGCCAAGCAA 896
Query 928 AACATCTTGGA-AGGCAAGAAGTCTAATTAGTTAGCACTTTGTTGTGCATTATGTATGTT 986
| ||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 897 AGCATATTGGAGAA-CAAGAAGTCTAGTTAGTTAGCACTTTGTTGTGCATTATGTATGTT 955
Query 987 TGATGACTAATTGTTGAGTATGGAGAGAGTGATTTTGCTTTT 1028
||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGATGACTAATTGTTGAGTATGGAGAGAGTGATTTTGCTTTT 997
> Ahg893546 jgi|Araly1|893546|Al_scaffold_0006_1542
Length=729
Score = 366 bits (198), Expect = 2e-100
Identities = 415/516 (80%), Gaps = 30/516 (6%)
Strand=Plus/Plus
Query 97 CTATAGAAGATGGGATTGT-TCTCCCA-CAAGATCTCCAGAGATGATCTGAAACCAGGCG 154
||| ||||||||||||| | ||||| | ||| |||||||||||||| || || |||| |
Sbjct 16 CTAGAGAAGATGGGATT-TATCTCCAACCAA-ATCTCCAGAGATGAACTCAAGGCAGGAG 73
Query 155 ATCACATCTATTCTTGGCGTAACGCTTATATCTACTCTCATCACGGAGTCTACGTAGGAG 214
||||||||||||| ||||||||||||||||||||||||||||||||| | || |||| |
Sbjct 74 ATCACATCTATTCATGGCGTAACGCTTATATCTACTCTCATCACGGAATATATATAGGCG 133
Query 215 ATGAGAAAGTCATTCATTTCACTCGTGGAGGTGGTCTAGAAT-TCGGAACAGGAACAGTT 273
||||||||||||||||||||||| ||||||||||||||||| | ||||| || || ||
Sbjct 134 ATGAGAAAGTCATTCATTTCACTTGTGGAGGTGGTCTAGAAACT-GGAACCGGGACC-TT 191
Query 274 -TTGGACAAGATCATCGATATT-TCAATACCAAATCATGGAAGAAGAGACAAAAAGTGTA 331
|||||||||||| ||| || | | ||| || |||||| ||| ||||||| |||
Sbjct 192 CTTGGACAAGATCCTCGTTAGTGT-AATCCCGAATCATA-AAG--GAGACAATCCTTGTC 247
Query 332 TTGATTGTGGAGATCAATCCAATCTCGGTGGTGTAATCTCTTCTTGTCTTGATTGTTTTC 391
| |||||||||| | ||| ||| ||| ||||||||||||||| || ||||| || ||||
Sbjct 248 CTAATTGTGGAGAGCGATCGAATGTCGATGGTGTAATCTCTTCATGCCTTGACTGCTTTC 307
Query 392 TCGCCGGAGGAAA--TCTACATCTCTTCGA-ATACAGTGCCTCTCC-GTCTATC-TTTCT 446
|| |||||||||| |||| |||||| || | |||||| |||||| | || | ||| |
Sbjct 308 TCTCCGGAGGAAACATCTA--TCTCTTTGAGA-ACAGTGTCTCTCCAG-CTG-CATTTAT 362
Query 447 AGCCAAAC---GAGGTGGTACATGCACGATAGCATCTTCAGATCCTTGTGATGAAGTCAT 503
||||||| || | || |||||||| |||||| |||| ||||| ||||||||||||||
Sbjct 363 TGCCAAACCTCGACGCGGCACATGCACAATAGCACCTTCGGATCCCTGTGATGAAGTCAT 422
Query 504 TTCTCGTGCTAAATTTCTCCTT-TTGCAAAATGGATTTGGTGAGTACGAT-CTTTTAGAC 561
||| || || |||| ||| || || | ||||| |||||||| ||| | |||| ||
Sbjct 423 TTCCCGCGCCAAATACCTC-TTATTCCGGAATGGGTTTGGTGATTACCACGCTTTG-GAA 480
Query 562 AACAATTGTGAAGATTTTGCGATTTATTGCAAAACT 597
|| ||||||||||||||||| || ||||| ||||||
Sbjct 481 AATAATTGTGAAGATTTTGCAATATATTGTAAAACT 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5