BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16370.1
Length=1907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488489 jgi|Araly1|488489|fgenesh2_kg.6__1623__AT5G16370.1 2507 0.0
Ahg339769 jgi|Araly1|339769|fgenesh1_pg.C_scaffold_2001868 1208 0.0
> Ahg488489 jgi|Araly1|488489|fgenesh2_kg.6__1623__AT5G16370.1
Length=1735
Score = 2507 bits (1357), Expect = 0.0
Identities = 1566/1668 (94%), Gaps = 9/1668 (1%)
Strand=Plus/Plus
Query 29 AGATGGAGCAAATGAAGCCATGCGCCGCAAACTCGCCGCCGTTGACGCCGATAGGTTTCT 88
|||||||| | ||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1 AGATGGAGGATATGAAGCCATGTGCCGCAAACTCGCCGCCGTTGACCCCGATAGGATTCT 60
Query 89 TAGAGAGAGCCGCCACCGTTTACGGTGACTGTACCTCCATCGTTTATGGCAGC-AACACC 147
|||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||
Sbjct 61 TAGAGAGAGCCGCCACCGTTTACGGTGACTGTACCTCCATCGTTTACGG-AACTAACACC 119
Query 148 GTTTACACGTGGCGTGAAACAAACCTCCGTTGTCTCCGCGTGGCGTCTTCTCTGTCTTCA 207
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 120 GTTTACACGTGGCGTGAAACAAACCTCCGTTGCCTCCGCGTCGCGTCTTCTCTATCTTCA 179
Query 208 ATCGGAATCGGCAGGTCTGACGTAGTCTCTGTTCTCTCTCCCAATACTCCGGCTATGTAC 267
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 180 ATCGGGATCGGCAGGTCCGACGTCGTCTCTGTTCTCTCTCCCAATACTCCGGCGATGTAC 239
Query 268 GAGCTCCAGTTTGCTGTTCCCATGTCCGGCGCAATCCTCAACAACATCAACACTCGCCTC 327
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 240 GAGCTCCAGTTCGCTGTTCCCATGTCCGGCGCAATCCTCAACAACGTCAACACACGCCTC 299
Query 328 GACGCACGCACCGTCTCTGTTCTTCTCCGTCACTGTGGATCTAAGCTTCTCTTCGTCGAC 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GACGCACGCACCGTCTCTGTTCTTCTCCGTCACTGTGGATCTAAGCTTCTCTTCGTCGAC 359
Query 388 GTCTTCTCCGTTGATCTTGCCGTTGAAGCGATCTCGATGATGACGACTGATCCGCCGATT 447
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 360 GTCTTCTCCGTCGATCTTGCCGTCGAAGCGATCTCGATGATGACGACTGATCCACCGATT 419
Query 448 CTTGTCTTCATCGCCGATAAAGAAGAAGAAGGAGGAGATGCTGACGTGGCGGATCGTACC 507
|| ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 420 CTCGTCTTCATCGCTGATAAAGAAGAGGACGGAGGCGATGCTGACGTGGCGGATCGTACC 479
Query 508 AAATTCAGTTACACTTACGATGATCTGATCCATAGAGGTGATCTGGATTTTAAATGGATC 567
||||||| |||||||||||||||||| |||||||||||||||| || ||| |||||||||
Sbjct 480 AAATTCAATTACACTTACGATGATCTTATCCATAGAGGTGATCCGGGTTTCAAATGGATC 539
Query 568 CGACCCGAAAGCGAATGGGATCCGGTTGTGCTTAA-TTACACTTCCGGTACGACTTCGGC 626
||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 540 CGACCCGAAAGTGAATGGGATCCGGTTGTG-TTAAATTACACTTCCGGTACGACTTCGGC 598
Query 627 TCCTAAAGGAGTCGTACACTGCCACAGAGGAATTTTCGTAATGTCAATTGATTCT-TTAA 685
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 599 TCCTAAAGGAGTGGTACACTGTCACAGAGGAATTTTCGTAATGTCAATTGATTCACTTA- 657
Query 686 TCGATTGGACCGTACCGAAAAATCCGGTTTACTTATGGACTCTACCGATATTTCACGCTA 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCGATTGGACCGTACCGAAAAATCCGGTTTACTTATGGACTCTACCGATATTTCACGCTA 717
Query 746 ACGGCTGGAGCTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTCTGTTTGCGTA 805
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 718 ACGGGTGGAGTTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTATGTTTGCGTA 777
Query 806 AATTCGACGCGCCGTTAATCTACCGTTTGATCCGTGATCACGGCGTCACACACATGTGTG 865
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 778 AATTCGACGCGCCGTTAATCTACCGTTTGATCCGTGAGCACGGCGTTACACACATGTGTG 837
Query 866 GAGCTCCGGTAGTGCTCAACATGTTGTCGGCGACT-AACGAATTTCAGCCGTTAAATCGT 924
|||||||||| ||||| |||||||| || |||||| || |||| ||| ||||| || |||
Sbjct 838 GAGCTCCGGTGGTGCTAAACATGTTATCAGCGACTCAA-GAATCTCAACCGTTGAACCGT 896
Query 925 CCTGTCAACATCTTAACCGCCGGTGCTCCGCCTCCAGCAGCCGTACTCCTCCGAGCAGAA 984
|| |||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||
Sbjct 897 CCCGTCAACATATTAACCGCCGGTGCTCCACCTCCAGCCGCCGTTCTCCTCCGAGCCGAA 956
Query 985 TCAATTGGATTCGTGATAAGTCACGGATACGGGTTAACGGAAACCGCCGGATTAAACGTG 1044
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 TCAATCGGATTCGTGATCAGTCACGGATACGGATTAACGGAAACCGCCGGATTAAACGTC 1016
Query 1045 TCATGCGCGTGGAAGCCACAGTGGAATCGTTTACCGGCGAGCGATCGAGCGAGGTTGAAA 1104
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1017 TCATGCGCGTGGAAGCCACAGTGGAACCGTCTACCGGCGAGCGATCGAGCGAGGTTGAAG 1076
Query 1105 GCACGGCAAGGAGTGAGAACCGTCGGATTTACTGAAATCGACGTGGTGGATCCTGAATCA 1164
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1077 GCACGGCAAGGAGTGAGAACCGTCGGATTTACAGAAATCGACGTGGTGGATCCTGAATCG 1136
Query 1165 GGTAGGAGCGTTGAGAGAAACGGAGAAACCGTCGGAGAAATAGTGATGAGAGGAAGCTCG 1224
||| |||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1137 GGTTTGAGCGTTGAGAGAAACGGAGAAACTGTCGGAGAAATTGTTATGAGAGGAAGCTCG 1196
Query 1225 ATCATGCTCGGTTACTTAAAAGATCCGGTCGGAACAGAGAAAGCTTTAAAGAACGGGTGG 1284
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1197 ATCATGCTTGGTTACTTGAAAGATCCGATCGGAACAGAGAAAGCTTTAAAGAACGGGTGG 1256
Query 1285 TTTTACACCGGAGATGTTGGTGTGATTCATTCCGATGGTTATCTAGAGATTAAAGATAGA 1344
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 1257 TTTTACACCGGAGATGTTGGTGTGATTCACTCCGATGGATATTTAGAGATTAAAGATAGA 1316
Query 1345 TCGAAAGATATAATTATAACGGGAGGTGAAAATGTGAGTAGTGTTGAGGTTGAAACGGTT 1404
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1317 TCGAAAGATATAATCATAACGGGAGGTGAAAATGTGAGTAGTGTTGAGGTTGAAGCGGTT 1376
Query 1405 TTGTATACGAATCCGGCGGTGAATGAAGTGGCGGTGGTGGCGAGACCTGATGTGTTTTGG 1464
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1377 TTGTATACGAATCCGGCGGTGAATGAAGTAGCGGTGGTGGCGAGACCTGATGAGTTTTGG 1436
Query 1465 GGAGAGACGCCGTGTGCGTTTGTTAGTTTGAAAAGTGGGTTGACTCAAAGACCGACGGAG 1524
||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 1437 GGAGAGACGCCGTGTGCGTTTGTGAGTTTGAAAAGTGGGTTGAGTCGGAGACCGACGGAG 1496
Query 1525 GTGGAAATGATAGAGTATTGTAGGAAGAAGATGCCGAAATATATGGTTCCTAAAACGGTG 1584
| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1497 GAGGAGTTGATAGAGTATTGTAGGAAGAAGATGCCGAGGTATATGGTTCCTAAAACGATG 1556
Query 1585 TCCTTTGTGGATGAGCTGCCTAAAACTTCGACGGGGAAGGTTATGAAGTTTGTACTTAGA 1644
|| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1557 TCGTTTGTGGATGAGGTGCCTAAGACTTCGACAGGGAAGGTTATGAAGTTTGTACTTAGA 1616
Query 1645 GAGATTGCGAAGAAGATGGGTACGACGAGGTTGAGTCGGATGTA-AAA 1691
|||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1617 GAGATTGCGAAGAAGATGGGTATAACGAGGTTGAGTCGGATGTAGAAA 1664
> Ahg339769 jgi|Araly1|339769|fgenesh1_pg.C_scaffold_2001868
Length=2112
Score = 1208 bits (654), Expect = 0.0
Identities = 1337/1662 (80%), Gaps = 66/1662 (4%)
Strand=Plus/Plus
Query 31 ATGGAGCAAATGAAGCCATGCGCCGCAAACTCGCCGCCGTTGACGCCGATAGG-TTTCTT 89
|||||| | |||||||| | |||||||||||| | ||||| |||||| |||| ||||||
Sbjct 484 ATGGAGGGATTGAAGCCAAGTGCCGCAAACTCGTCACCGTTAACGCCGTTAGGCTTTCTT 543
Query 90 AGAGAGAGCCGCCACCGTTTACGGTGACTGTACCTCCATCGTTTATGGCAGCAACACCGT 149
||||| || || ||||| || || |||||||||||||||||||| |||| | | ||||
Sbjct 544 -GAGAGGGCAGCGACCGTGTATGGAGACTGTACCTCCATCGTTTACGGCAACTCCGCCGT 602
Query 150 TTACACGTGGC-GTGAAACAAACCTCCGTTGTCTCCGCGTGGCGTCTTCTCTGTCTTCAA 208
||||| |||| | ||||| || |||||||| |||||||| |||||| |||||||||| |
Sbjct 603 GTACACATGGCAG-GAAACGAATCTCCGTTGCCTCCGCGTCGCGTCTGCTCTGTCTTCCA 661
Query 209 TCGGAATCGGCAGGTCTGACGTAGTCTCTGTTCTCTCTCCCAATACTCCGGCTATGTACG 268
| |||||| | || || ||||| |||||||| || ||| | || ||||||| |||||||
Sbjct 662 TTGGAATCAGAAGATCCGACGTTGTCTCTGTCCTATCTGCTAACACTCCGGAGATGTACG 721
Query 269 AGCTCCAGTTTGCTGTTCCCATGTCCGGCGCAATCCTCAACAACATCAACACTCGCCTCG 328
|||||||||| || ||||| |||| ||||||||||| |||||| ||||||| || || |
Sbjct 722 AGCTCCAGTTCGCCGTTCCGATGTGTGGCGCAATCCTTAACAACCTCAACACGCGTCTTG 781
Query 329 ACGCACGCACCGTCTCTGTTCTTCTCCGTCACTGTG-GA-TCTAAGCTTCTCTTCGTCGA 386
| |||| |||||||||||||||||||| || | || || |||||||| |||||||||||
Sbjct 782 ATGCACAAACCGTCTCTGTTCTTCTCCGCCA-T-TGCGAGTCTAAGCTGCTCTTCGTCGA 839
Query 387 CGTCTTCTCCGT-TGATCTTGCCGTTGAAGCGATCTCGATGATGACGACTGATCCGCCGA 445
||| || | | | ||||| ||||| ||||||||| ||| | || | | |||||||||
Sbjct 840 CGTGTTTTAC-TCCGATCTCGCCGTAGAAGCGATCGCGACGTTG-C-TC-AATCCGCCGA 895
Query 446 TTCTTGTCTTCATCGCCGATAAAGAAGAAGAAGGAGGAGATGCTGACGTGGCGGATCGTA 505
|||| ||| | ||||| || || || |||||||||| || | | ||| |||| |||
Sbjct 896 TTCTCGTCCTAATCGCTGA-CCAG--GAGGAAGGAGGAGCTG-T-A-GTGACGGAGCGTT 949
Query 506 CCAAATTCAGTTACACT-TACGA-TGATCTGA-TCCATAGAGGTGATCTGGATTTTAAAT 562
| |||||| ||||| | ||| | |||||| | || | ||||| ||| |||||||||||
Sbjct 950 CAAAATTCTGTTAC-TTGTAC-AGTGATCT-AGTCAAGAGAGGCAATCCGGATTTTAAAT 1006
Query 563 GGATCCGACCCGAAAGCGAATGGGATCCGGTTGTGCTTAATTACACTTCCGGTACGACTT 622
||||||||||||||||||||||||| ||| ||||| | || || || ||||||||||| |
Sbjct 1007 GGATCCGACCCGAAAGCGAATGGGACCCGATTGTGGTCAACTATACATCCGGTACGACGT 1066
Query 623 CGGCTCCTAAAGGAGTCGTACACTGCCACAGAGGAATTTTCGTAATGTCAATTGATTCTT 682
|| |||||||||| || || || |||||||| || |||||||| ||| | |||||||||
Sbjct 1067 CGTCTCCTAAAGGCGTGGTTCATTGCCACAGGGGTATTTTCGTCATGGCGCTTGATTCTT 1126
Query 683 TAATCGATTGGACCGTACCGAAAAATCCGGTTTACTTATGGA-CTCTACCGATATTTCAC 741
||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1127 TAACCGATTGGGCCGTACCGAAAAATCCGGTTTACTTATGGACCT-TACCGATATTTCAC 1185
Query 742 GCTAACGGCTGGAGCTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTCTGTTTG 801
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1186 GCTAACGGTTGGACCTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTCTGTGTG 1245
Query 802 CGTAAATTCGACGCGCCGTTAATCTACCGTTTGATCCGTGATCACGGCGTCACACACATG 861
|||||| || |||||||||||||||||||| | ||||||||||||||||| || ||||||
Sbjct 1246 CGTAAACTCCACGCGCCGTTAATCTACCGTCTAATCCGTGATCACGGCGTGACTCACATG 1305
Query 862 TGTGGAGCTCCGGTAGTGCT-CAACATGT-TGTCGGCGACT-AACGAATTT---CAGCCG 915
|| || || || || |||| || || | | ||||| | | || |||| | |||||
Sbjct 1306 TGCGGCGCACCAATATTGCTTCAG-AT-TCTATCGGCAAGTCAA-GAATCTGAACAGCCT 1362
Query 916 -TTAA-ATCGTCCTGTCAACAT-CTTAACCGCCGGTGCTCCGCCTCCAGC-AGCCGTACT 971
|||| | | || ||||| || ||||||||||||| | | || || || | | || ||
Sbjct 1363 CTTAAGAAC--CCGGTCAA-ATTCTTAACCGCCGGTTCGGCTCCGCCGGCTA-CGGTGCT 1418
Query 972 CCTCCGAGCAGAATCAATTGGATTCGT-GATAAGTCACGGATACGGGTTAACGGAAACCG 1030
|||||| || ||||| | || ||| | | | || ||||| ||||| |||||||| || |
Sbjct 1419 CCTCCGCGCCGAATCTCTAGGTTTCTTCG-TCAGCCACGGTTACGGATTAACGGAGACAG 1477
Query 1031 CCGGAT-TAAACGTGTCATGCGCGTGGAAGCCACAGTGGAATCGTTTACCGGCGAGCGAT 1089
| || | | | | | || ||||||||||| ||| | |||||||| ||||||||||| ||
Sbjct 1478 CTGG-TGTGATCATCTCCTGCGCGTGGAACCCAAATTGGAATCGATTACCGGCGAGTGAC 1536
Query 1090 CGAGCGAGGTTGAAAGCACGGCAAGGAGTGAGAACCGTCGGATTTA-CTGAAATCGACGT 1148
| |||||| |||||| |||||||||||||||||||||| ||||||| | |||||||| ||
Sbjct 1537 CAAGCGAGATTGAAATCACGGCAAGGAGTGAGAACCGTTGGATTTAGC-GAAATCGATGT 1595
Query 1149 GGTGGATCCTGAATCAGGTAGGAGCGTTGAGAGAAACGGAGAAACCGTCGGAGAAATAGT 1208
||||||| ||||| ||| ||||||| |||||| | |||| ||| ||||||||||||
Sbjct 1596 AGTGGATCGAGAATCGGGTCGGAGCGTGGAGAGAGATGGAGCAACATTCGGAGAAATAGC 1655
Query 1209 GATGAGAGGAAGCTCGATCATGCTCGGTTACTTAAAAGATCCGGTCGGAACAGAGAAAGC 1268
| | ||||| || || |||||||| |||||||| ||||||||| ||||||| | ||| |
Sbjct 1656 GTTAAGAGGGAGTTCAATCATGCTTGGTTACTTGAAAGATCCGATCGGAACTCAAAAATC 1715
Query 1269 -TTTAAAGAACGGGTGGTT-TTACACCGGAGATGTTGGTGTGATTCATTCCGATGGTTAT 1326
||||| |||||| ||||| || ||||||||| || ||||||||||| ||||||||
Sbjct 1716 GTTTAA-GAACGGATGGTTCTT-CACCGGAGACGTCGGTGTGATTCACGGAGATGGTTA- 1772
Query 1327 CT-AGAGATTAAAGATAGATCGAAAGATATAATTATAACGGGAGGTGAAAATGTGAGTAG 1385
|| |||||| |||||| |||| |||||| | ||||| | ||||| || |||||||| ||
Sbjct 1773 CTTAGAGATCAAAGATCGATCAAAAGATGTGATTATTTCAGGAGGAGAGAATGTGAGCAG 1832
Query 1386 TGTTGAGGTTGAAACGGTTTTGTATACGAATCCGGCGGTGAATGAAGTGGCGGTGGTGGC 1445
||| || || || |||| ||||| || ||||||||||||||||||| ||||||||||||
Sbjct 1833 TGTGGAAGTGGAGGCGGTGTTGTACACAAATCCGGCGGTGAATGAAGCGGCGGTGGTGGC 1892
Query 1446 GAGACCTGATGTGTTTTGGGGAGAGACGCCGTGTGCGTTTGTTAGTTTGAAAAGT-GGGT 1504
|||||||| | |||||||||||||||||||||||| ||||| ||||| |||| ||||
Sbjct 1893 TAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTGAGTTT-AAAACCCGGGT 1951
Query 1505 TGACTCA-AAGACCGACGGAGGTGGAAATGATAGAGTATTGTAGGAAGAAGATGCCGAAA 1563
|||| | || ||| ||||| ||| || || |||||||| | |||||||||||| |
Sbjct 1952 TGACCCGGAA-ACCCACGGATAAGGAGATTATTGAGTATTGCAAGAAGAAGATGCC-ACG 2009
Query 1564 T-ATATGGTTCCTAAAACGGTGTCCTTTGTGGATGAGCTGCCTAAA-ACTTCGACGGGGA 1621
| | ||||| |||||||| ||||| ||| | || ||| | || ||| ||||| || || |
Sbjct 2010 TTACATGGTGCCTAAAACTGTGTCGTTTCTTGAAGAGTTACC-AAAGACTTCTACAGGAA 2068
Query 1622 AGGTTATGAAGTT-TGTACTTAGAGAGATTGCGAAGAAGATG 1662
|| ||| ||||| | | |||| ||||||||| || || |||
Sbjct 2069 AGATTACAAAGTTAT-TGCTTAAAGAGATTGCCAAAAAAATG 2109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71647750845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5