BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16380.1
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941131 jgi|Araly1|941131|scaffold_601675.1 965 0.0
> Ahg941131 jgi|Araly1|941131|scaffold_601675.1
Length=633
Score = 965 bits (522), Expect = 0.0
Identities = 593/626 (95%), Gaps = 9/626 (1%)
Strand=Plus/Plus
Query 88 TTTTT-ATTCAATGGGT--T-CTAGTCAAGATCTCTTCTTCCTCATCATCGTTCTCTTCT 143
||||| ||||||||||| | |||||| ||||||||||||| ||||| ||| ||||||||
Sbjct 11 TTTTTAATTCAATGGGTACTACTAGTCGAGATCTCTTCTTCATCATCTTCGCTCTCTTCT 70
Query 144 CCTCGATTCTCTTTCC-TCAGCTTTCCTCGCTACCGGATCCGTCGTTTTACGATTATCTC 202
| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 71 CATCGATTCTC-TTCCTTCAGCTTTCCTCGTTACCGGATCCGTCGTTTTACGATTATCTC 129
Query 203 CGGGAAAGCAATCTTCCCGCCGGAATAGTTCCCAAAGGAGTTACCAATTTCTCGATCGAC 262
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 130 CGGGAAAGCAATCTTCCCGCCGGAATAGTTCCAAAAGGAGTTACTAATTTCTCGATCGAC 189
Query 263 ATCAAAACGGGGCGTTTCACCGTCGCTCTCCCTGTTCCTTGCGATGCTAAATTCGAGAAT 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GTCAAAACGGGGCGTTTCACCGTCGCTCTCCCTGTTCCTTGCGATGCTAAATTCGAGAAC 249
Query 323 CAGTTCCACTTCGACTACAATATCTCCGGCGTTCTCTCCGATGGACGGATCGGGAATTTA 382
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 250 CAGTTCCACTTCGACTATAACATCTCCGGCGTTCTCTCCGATGGACGGATCGGGAATTTA 309
Query 383 TCTGGTGTGACGCAGAAGGAGCTGTTTCTT-TGGTTTGCTGTGAAAGGAATACATGTTGA 441
|||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||| ||
Sbjct 310 TCTGGTGTGACGCAGAAGGAGCTGTT-CTTGTGGTTTGCTGTTAAGGGAATACATGTGGA 368
Query 442 TCCGCAGAGCTCTGGGTTAATTCACTTTGATGTCGGTGTCGCTGATAAGCAGCTTTCTCT 501
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TCCGGAGAGCTCTGGGTTAATTCACTTTGATGTCGGTGTCGCTGATAAGCAGCTTTCTCT 428
Query 502 TTCGCTCTTTGAGTCGCCTCGAGATTGCACCGCCGCGGAATCTCAACCTCGTGCGGTTGA 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CTCGCTCTTTGAGTCGCCTCGAGATTGCACCGCCGCGGAATCTCAACCTCGTGCGGTTGA 488
Query 562 TCTCTCTAGACCCCGTGATTTGGAGAAGCAATCTGAAGAAATGCAATCGACAATGCAGAA 621
| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 489 TTTCTCTAGACCCCGTGATTTGGAGAGGCAATCTGAAGAAATCCAATCGACAATGCAGAA 548
Query 622 GCAACCTGAAGAGATCCAATCGATATTTGGACCACGAAGAAGTCGCTGGACATTAGGTTT 681
| || ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 549 GAAATCTGAAGATATCCAATCGATATTTGGACCACGAAGAAATCGCTGGACATTAGGTTT 608
Query 682 TTGATCTGAGGCTTAGAAGGAAGTGC 707
||||| ||||||||||||||||||||
Sbjct 609 TTGAT-TGAGGCTTAGAAGGAAGTGC 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5