BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16390.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941132 jgi|Araly1|941132|scaffold_601676.1 1395 0.0
> Ahg941132 jgi|Araly1|941132|scaffold_601676.1
Length=890
Score = 1395 bits (755), Expect = 0.0
Identities = 850/894 (95%), Gaps = 14/894 (2%)
Strand=Plus/Plus
Query 86 CCAATAACAATAAGAAGACGAATGGCGTCTTCGTCGTTCTCAGTCACATCTCCAGCTGCT 145
|||| ||||| ||||| | |||||||||||||||||||||| ||||||||||| | |||
Sbjct 1 CCAACAACAACAAGAATAAGAATGGCGTCTTCGTCGTTCTCTGTCACATCTCC-G--GCT 57
Query 146 GCTGCTTCCGTCTATGCAGTCACTCAAACCTCCTCGCACTTCCCAATCCAAAACCGCTCT 205
|||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||
Sbjct 58 GCTGCTTCCGTCTATGCAGTCACTCAAACCTCATCGCACTTCCCAGTCCCAAACCGCTCT 117
Query 206 CGCAGAGTTTCTTTCCGTCTCTCTGCTAAGCCCAAGCTTCGCTTTCTCTCCAAGCCTAGT 265
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGCAGAGTTACTTTCCGTCTCTCTGCTAAGCCCAAGCTTCGCTTTCTCTCCAAGCCTAGT 177
Query 266 CGCAGTAGCTACCCTGTGGTGAAAGCACAATCTAACAAGGTTAGTACTGGTGCATCATCA 325
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 178 CGCAGTAGCTACCCTGTGGTGAAGGCACAATCTAACAAGGTTAGTACTGGTGCATCATCA 237
Query 326 AATGCTGCCAAAGTTGATGGGCCATCATCAGCTGAAGGAAAGGAGAAAAACTCATTGAAG 385
|||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 238 AATGCTGCCAAAATTGATGGGCCATCAGCAGCTGAAGGAAAGGAGAAAACCTCGTTGAAG 297
Query 386 GA---GTCGTCTGC-T--TCTTC-T--CCTGAATTAGCTACAGAAGAGTCTATTTCTGAG 436
|| ||| ||| | | ||||| | |||||||||||||||||||||||||||||||||
Sbjct 298 GACTCGTCTTCTTCTTCATCTTCTTCACCTGAATTAGCTACAGAAGAGTCTATTTCTGAG 357
Query 437 TTCCTTACCCAAGTAACAACTCTTGTCAAGCTTGTGGATTCAAGAGACATTGTTGAGTTG 496
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 358 TTCCTTACCCAAGTAACAACTCTTGTCAAGCTTGTGGATTCGAGAGACATCGTCGAGTTG 417
Query 497 CAGTTGAAACAACTCGACTGTGAACTAGTCATTCGaaaaaaaGAAGCCTTACCTCAACCT 556
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CAGTTGAAACAACTTGACTGTGAACTAGTCATTCGAAAAAAAGAAGCCTTACCTCAACCT 477
Query 557 CAAGCTCCTGCATCTTATGTTATGATGCAGCAACCAAATCAACCATCTTATGCCCAGCAA 616
||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 478 CAAGCTCCTGCATCTTATGTTATGATGCAGCAACCAAATCAACAATCTTATGCACAACAA 537
Query 617 ATGGCTCCTCCTG-CTGCACCTGCTGCTGCCGCACCAGCCCCTTCTACGCCAGCCTCTCT 675
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 538 ATGGCTCCTCC-GCCTGCACCTGCTGCTGCCTCACCAGCCCCTTCTACGCCAGCCTCCCT 596
Query 676 GCCTCCACCATCCCCACCTACTCCAGCCAAATCGTCACTTCCTACTGTTAAAAGCCCCAT 735
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 597 GCCTCCACCATCCCCACCTACTCCAGCCAAATCATCGCTTCCTACGGTTAAAAGCCCCAT 656
Query 736 GGCTGGCACATTCTACCGTAGTCCTGCACCTGGTGAACCACCCTTTATTAAGGTTGGAGA 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGCTGGCACATTCTACCGTAGTCCTGCACCTGGTGAACCACCCTTTATTAAGGTTGGAGA 716
Query 796 CAAAGTGCAGAAGGGGCAAGTTCTATGCATTGTTGAAGCCATGAAGTTAATGAATGAAAT 855
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAAAGTACAGAAGGGGCAAGTTCTATGCATTGTTGAAGCCATGAAGTTAATGAATGAAAT 776
Query 856 AGAGTCTGACCATACCGGAACCGTAGTCGATATTGTCGCAGAAGACGGCAAGCCTGTCAG 915
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGAGTCTGACCATACAGGAACCGTAGTCGATATTGTCGCAGAAGACGGCAAGCCTGTCAG 836
Query 916 CCTCGACACTCCTCTGTTTGTGGTTCAACCGTAGAATCGGCACCATGAGAAATG 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CCTCGACACTCCTCTGTTTGTGGTTCAACCGTAGAATCGGCACCATGAGAAATG 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5